Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 8.0e-53 210.3 117 100.0
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 8.0e-53 210.3 117 100.0
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 8.0e-53 210.3 117 100.0
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 4.4e-51 204.5 117 97.4
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 6.3e-50 200.7 118 96.6
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-40 169.9 103 95.1
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 6.1e-37 157.5 120 80.0
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.6e-35 152.1 120 79.2
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 9.8e-35 150.2 120 70.0
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 9.8e-35 150.2 120 70.0
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 9.8e-35 150.2 120 70.0
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-34 149.4 120 70.0
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.1e-33 146.7 110 82.7
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 2.4e-33 145.6 120 66.7
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 2.4e-33 145.6 120 66.7
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.6e-32 142.9 113 69.0
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.0e-32 142.5 123 75.6
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 2.1e-29 132.5 120 71.7
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 2.1e-29 132.5 120 71.7
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-28 130.2 120 65.8
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 2.3e-28 129.0 120 70.0
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.2e-24 116.7 109 72.5
BraA08t32331Z Brassica rapa HOM05D003595 ORTHO05D004132 6.6e-23 110.9 116 56.9
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.8e-21 105.5 66 80.3
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 3.7e-18 95.1 55 78.2
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 8.3e-18 94.0 57 78.9
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-17 92.8 53 81.1
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 9.2e-17 90.5 53 79.2
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 9.2e-17 90.5 53 79.2
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 9.2e-17 90.5 53 79.2
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 9.2e-17 90.5 53 79.2
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-16 90.1 53 79.2
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.2e-16 90.1 53 77.4
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 1.6e-16 89.7 53 77.4
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.1e-16 89.4 119 46.2
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 6.0e-16 87.8 52 78.8
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 6.0e-16 87.8 53 75.5
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.3e-15 86.7 53 73.6
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-15 86.3 53 73.6
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-15 86.3 53 73.6
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 2.3e-15 85.9 51 74.5
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 3.9e-15 85.1 54 74.1
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 5.1e-15 84.7 50 74.0
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-14 83.6 54 72.2
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.5e-14 83.2 50 78.0
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.5e-14 83.2 101 42.6
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 2.5e-14 82.4 54 66.7
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 3.3e-14 82.0 54 70.4
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.3e-14 82.0 98 44.9
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 4.3e-14 81.6 53 71.7
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 4.3e-14 81.6 50 76.0
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 5.6e-14 81.3 109 40.4
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 5.6e-14 81.3 55 65.5
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 5.6e-14 81.3 103 44.7
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 5.6e-14 81.3 57 63.2
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 9.5e-14 80.5 55 67.3
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.1e-13 79.3 82 50.0
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.8e-13 79.0 55 65.5
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.8e-13 79.0 102 46.1
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.7e-13 78.2 57 61.4
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 4.7e-13 78.2 110 43.6
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.7e-13 78.2 54 66.7
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 6.2e-13 77.8 55 60.0
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 8.1e-13 77.4 56 64.3
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 8.1e-13 77.4 57 64.9
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 8.1e-13 77.4 106 42.5
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 1.1e-12 77.0 55 63.6
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-12 77.0 122 38.5
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.4e-12 76.6 102 46.1
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.8e-12 76.3 103 41.7
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.3e-12 75.9 101 41.6
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 2.3e-12 75.9 56 62.5
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 2.3e-12 75.9 51 62.7
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.3e-12 75.9 55 58.2
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 3.1e-12 75.5 55 63.6
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 3.1e-12 75.5 58 62.1
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.0e-12 75.1 55 61.8
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 4.0e-12 75.1 58 53.4
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.2e-12 74.7 57 57.9
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.2e-12 74.7 54 59.3
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 5.2e-12 74.7 93 40.9
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.2e-12 74.7 108 43.5
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.2e-12 74.7 107 42.1
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.2e-12 74.7 55 58.2
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 8.9e-12 73.9 55 60.0
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 8.9e-12 73.9 56 62.5
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 1.2e-11 73.6 68 51.5
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 1.5e-11 73.2 105 37.1
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.5e-11 73.2 107 40.2
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.0e-11 72.8 57 59.6
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 2.0e-11 72.8 57 61.4
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.6e-11 72.4 107 41.1
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.6e-11 72.4 107 41.1
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 2.6e-11 72.4 55 60.0
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.6e-11 72.4 55 58.2
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 3.4e-11 72.0 54 61.1
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 3.4e-11 72.0 84 44.0
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 3.4e-11 72.0 56 62.5
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 4.4e-11 71.6 57 59.6
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 4.4e-11 71.6 54 59.3
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 4.4e-11 71.6 90 48.9
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 5.8e-11 71.2 55 56.4
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 5.8e-11 71.2 93 40.9
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 5.8e-11 71.2 55 61.8
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 5.8e-11 71.2 57 56.1
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 7.5e-11 70.9 55 60.0
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 9.9e-11 70.5 56 60.7
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 9.9e-11 70.5 108 39.8
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.3e-10 70.1 84 47.6
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.3e-10 70.1 97 38.1
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.3e-10 70.1 55 58.2
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.3e-10 70.1 55 58.2
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.3e-10 70.1 84 47.6
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.7e-10 69.7 55 56.4
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 1.7e-10 69.7 54 55.6
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.7e-10 69.7 54 55.6
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.7e-10 69.7 54 55.6
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.7e-10 69.7 54 55.6
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.7e-10 69.7 52 63.5
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.7e-10 69.7 53 56.6
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.2e-10 69.3 42 71.4
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 2.2e-10 69.3 82 43.9
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.2e-10 69.3 49 61.2
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.2e-10 69.3 52 59.6
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.9e-10 68.9 54 55.6
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.9e-10 68.9 56 58.9
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.9e-10 68.9 57 57.9
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 3.7e-10 68.6 85 48.2
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 3.7e-10 68.6 54 55.6
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.9e-10 68.2 55 54.5
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 4.9e-10 68.2 53 54.7
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 4.9e-10 68.2 55 58.2
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 6.4e-10 67.8 53 54.7
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 8.3e-10 67.4 57 54.4
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 8.3e-10 67.4 54 53.7
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.1e-09 67.0 53 64.2
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.4e-09 66.6 57 52.6
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.9e-09 66.2 53 52.8
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 1.9e-09 66.2 52 53.8
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.9e-09 66.2 57 57.9
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.9e-09 66.2 91 42.9
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.9e-09 66.2 56 53.6
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.4e-09 65.9 101 40.6
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 2.4e-09 65.9 94 41.5
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 3.2e-09 65.5 60 55.0
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 4.1e-09 65.1 53 54.7
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 4.1e-09 65.1 53 56.6
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 4.1e-09 65.1 52 57.7
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 4.1e-09 65.1 62 48.4
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 7.1e-09 64.3 52 55.8
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 7.1e-09 64.3 52 55.8
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 7.1e-09 64.3 55 60.0
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 9.2e-09 63.9 59 49.2
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.2e-08 63.5 49 55.1
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 1.6e-08 63.2 60 51.7
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.7e-08 62.4 55 50.9
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 2.7e-08 62.4 59 55.9
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.7e-08 62.4 64 50.0
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 4.6e-08 61.6 53 50.9
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.6e-08 61.6 56 55.4
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.6e-08 61.6 56 55.4
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.6e-08 61.6 56 55.4
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 6.0e-08 61.2 57 56.1
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 6.0e-08 61.2 53 56.6
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 7.8e-08 60.8 111 38.7
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.0e-07 60.5 52 61.5
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.7e-07 59.7 58 48.3
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.7e-07 59.7 49 51.0
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.0e-07 58.9 55 49.1
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.0e-07 58.9 58 48.3
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.0e-07 58.9 58 48.3
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.9e-07 58.5 52 55.8
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 5.1e-07 58.2 54 50.0
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.6e-07 57.8 57 49.1
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.5e-06 56.6 52 59.6
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.9e-06 56.2 63 46.0
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.5e-06 55.8 57 49.1
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.5e-06 55.8 57 49.1
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 3.3e-06 55.5 53 49.1
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 3.3e-06 55.5 54 51.9
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.3e-06 55.1 55 49.1


User provided reference genes

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