Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p06430 Brassica napus HOM05D003553 ORTHO05D027688 1.1e-170 603.2 307 100.0
BcaC08g43294 Brassica carinata HOM05D003553 ORTHO05D027688 7.4e-74 281.6 144 100.0
BcaC08g43295 Brassica carinata HOM05D003553 ORTHO05D005072 1.1e-61 241.1 280 53.6
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 1.9e-53 213.8 261 52.9
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 3.2e-53 213.0 260 52.7
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 9.4e-53 211.5 261 52.5
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 1.2e-52 211.1 262 52.3
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 1.6e-52 210.7 260 52.3
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 2.1e-52 210.3 261 52.1
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 2.7e-52 209.9 262 52.3
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-51 208.0 261 52.1
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 1.0e-51 208.0 261 52.1
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 5.2e-51 205.7 260 51.2
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 1.1e-50 204.5 261 50.6
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 2.6e-50 203.4 260 50.0
BcaC06g34281 Brassica carinata HOM05D003553 ORTHO05D027688 2.6e-50 203.4 140 77.9
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 3.3e-50 203.0 261 49.8
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 3.3e-50 203.0 261 49.8
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 7.4e-50 201.8 260 50.4
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.3e-49 201.1 261 51.0
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 2.8e-49 199.9 260 50.0
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 4.8e-49 199.1 260 50.0
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 6.3e-49 198.7 260 49.6
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 8.2e-49 198.4 261 48.7
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.1e-48 198.0 260 48.8
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 7.7e-47 191.8 260 47.3
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 8.5e-46 188.3 260 48.1
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.9e-45 187.2 259 46.7
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 4.2e-45 186.0 259 45.9
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 2.1e-44 183.7 258 46.1
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 2.1e-44 183.7 259 47.1
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 6.1e-44 182.2 258 45.7
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 8.0e-44 181.8 259 45.9
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 1.2e-42 177.9 259 44.4
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 1.2e-42 177.9 259 44.4
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 1.2e-42 177.9 259 44.4
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 1.5e-42 177.6 249 46.2
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 2.6e-42 176.8 258 44.2
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 2.6e-42 176.8 259 44.0
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 5.7e-42 175.6 259 44.0
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 7.5e-42 175.3 261 45.2
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 1.3e-41 174.5 258 44.6
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.7e-41 174.1 260 45.0
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 6.3e-41 172.2 260 43.5
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 1.3e-33 147.9 259 40.2
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 1.1e-32 144.8 260 36.5
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.1e-32 144.8 264 37.9
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.4e-32 143.7 259 38.2
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 4.1e-32 142.9 262 37.8
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 9.1e-32 141.7 259 37.8
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.6e-31 141.0 259 37.5
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.6e-31 141.0 259 37.5
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.7e-31 140.2 259 37.5
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 3.8e-30 136.3 223 39.0
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 8.5e-30 135.2 257 36.6
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 1.5e-29 134.4 257 37.0
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 1.9e-29 134.0 259 35.9
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 7.2e-29 132.1 133 54.1
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 1.2e-28 131.3 259 33.2
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 2.1e-28 130.6 258 34.5
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 2.8e-28 130.2 259 36.3
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 6.1e-28 129.0 257 35.0
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 6.1e-28 129.0 259 34.4
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 1.0e-27 128.3 258 34.9
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 1.8e-27 127.5 257 34.2
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 1.8e-27 127.5 257 34.6
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 2.3e-27 127.1 259 32.8
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 2.3e-27 127.1 259 32.0
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 4.0e-27 126.3 258 34.5
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 1.2e-26 124.8 260 33.5
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 1.2e-26 124.8 259 33.2
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 1.5e-26 124.4 256 34.8
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 2.0e-26 124.0 257 34.2
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 3.4e-26 123.2 258 32.9
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 3.4e-26 123.2 260 33.5
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 3.4e-26 123.2 369 27.9
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 3.4e-26 123.2 259 32.0
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 4.4e-26 122.9 334 29.9
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 4.4e-26 122.9 259 31.3
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 5.7e-26 122.5 259 35.5
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 9.8e-26 121.7 264 34.5
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 1.7e-25 120.9 256 33.6
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 1.7e-25 120.9 258 34.1
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 2.2e-25 120.6 257 33.1
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 2.8e-25 120.2 260 33.8
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 3.7e-25 119.8 259 32.4
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 3.7e-25 119.8 266 34.2
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 3.7e-25 119.8 269 34.2
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 8.3e-25 118.6 259 32.8
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 1.4e-24 117.9 257 32.7
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 1.8e-24 117.5 259 32.0
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 2.4e-24 117.1 278 33.1
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 2.4e-24 117.1 261 34.5
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 7.0e-24 115.5 334 29.3
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 1.6e-23 114.4 218 35.8
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 1.6e-23 114.4 256 32.4
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 2.0e-23 114.0 264 33.0
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 5.9e-23 112.5 259 32.8
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 1.3e-22 111.3 265 32.8
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 1.3e-22 111.3 264 31.8
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 3.8e-22 109.8 267 33.7
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 3.8e-22 109.8 284 29.2
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 3.8e-22 109.8 264 30.7
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 5.0e-22 109.4 260 31.9
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 1.5e-21 107.8 264 30.3
BcaB02g10729 Brassica carinata HOM05D003553 ORTHO05D016026 1.9e-21 107.5 60 90.0
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 2.5e-21 107.1 259 31.7
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 4.3e-21 106.3 266 30.8
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 5.6e-21 105.9 135 44.4
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 7.3e-21 105.5 134 43.3
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 7.3e-21 105.5 264 30.7
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 1.2e-20 104.8 259 32.4
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 2.1e-20 104.0 257 30.7
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 2.1e-20 104.0 259 30.1
BolC8t48344H Brassica oleracea HOM05D003553 ORTHO05D027688 3.6e-20 103.2 116 54.3
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 8.0e-20 102.1 280 30.7
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 1.4e-19 101.3 259 31.3
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 1.4e-19 101.3 134 41.8
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 1.5e-18 97.8 259 34.0
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 2.0e-18 97.4 238 34.5
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.6e-18 97.1 135 43.0
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 7.5e-18 95.5 133 40.6
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 4.9e-17 92.8 215 34.4
HPP92_007666 Vanilla planifolia HOM05D003553 ORTHO05D005072 8.3e-17 92.0 113 45.1
MD14G1195400 Malus domestica HOM05D003553 ORTHO05D005072 1.4e-16 91.3 153 37.3
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 3.2e-16 90.1 233 29.2
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 7.8e-15 85.5 358 25.4
BcaB02g09857 Brassica carinata HOM05D003553 ORTHO05D016026 1.3e-14 84.7 49 87.8
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 5.0e-14 82.8 249 27.7
BcaC06g35156 Brassica carinata HOM05D003553 ORTHO05D005072 9.5e-13 78.6 60 73.3
C07p19270 Brassica napus HOM05D003553 ORTHO05D016026 9.5e-13 78.6 60 73.3
BolC7t42440H Brassica oleracea HOM05D003553 ORTHO05D016026 9.5e-13 78.6 60 73.3
TAR622G0338 Trochodendron aralioides HOM05D003553 ORTHO05D005072 2.1e-12 77.4 49 63.3
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 2.8e-12 77.0 131 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 3.6e-12 76.6 131 35.9
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 3.6e-12 76.6 219 29.7
BolC1t02585H Brassica oleracea HOM05D000745 ORTHO05D005072 1.0e-11 75.1 60 71.7
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 8.9e-11 72.0 134 34.3
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 4.4e-10 69.7 170 32.9
BcaC01g03013 Brassica carinata HOM05D003553 ORTHO05D039244 5.8e-10 69.3 111 44.1
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 7.5e-10 68.9 131 31.3
BcaB01g02747 Brassica carinata HOM05D003553 ORTHO05D039541 3.7e-09 66.6 34 79.4
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 1.9e-08 64.3 131 31.3
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 7.0e-08 62.4 268 27.6
CARHR035090 Cardamine hirsuta HOM05D003553 ORTHO05D040806 6.0e-07 59.3 42 59.5
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 6.0e-07 59.3 40 80.0
A06p09090 Brassica napus HOM05D003553 ORTHO05D005072 1.3e-06 58.2 120 38.3
A01p14790 Brassica napus HOM05D000313 ORTHO05D000065 5.0e-06 56.2 40 62.5
BraA01t01420Z Brassica rapa HOM05D000313 ORTHO05D000065 5.0e-06 56.2 40 62.5


User provided reference genes

Program Settings