Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p06230 Brassica napus HOM05D001444 ORTHO05D003766 2.0e-121 439.1 219 100.0
BolC6t35734H Brassica oleracea HOM05D001444 ORTHO05D003766 1.6e-102 376.3 220 88.6
BcaC08g43275 Brassica carinata HOM05D001444 ORTHO05D003766 3.0e-77 292.4 234 67.9
BraA06t23480Z Brassica rapa HOM05D001444 ORTHO05D003766 4.6e-70 268.5 243 63.0
A06p02730 Brassica napus HOM05D001444 ORTHO05D003766 3.1e-66 255.8 199 72.9
BcaB07g33548 Brassica carinata HOM05D001444 ORTHO05D003766 1.4e-63 246.9 229 63.3
C06p06260 Brassica napus HOM05D001444 ORTHO05D003766 5.3e-50 201.8 207 57.0
BolC6t35735H Brassica oleracea HOM05D001444 ORTHO05D003766 5.3e-50 201.8 207 57.0
AT3G05790 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 9.1e-42 174.5 238 48.3
Thhalv10022093m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 2.0e-41 173.3 248 46.0
AL3G16530 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.3e-40 170.6 237 48.1
C06p06270 Brassica napus HOM05D001444 ORTHO05D003766 1.2e-38 164.1 153 60.8
Carub.0003s0515 Capsella rubella HOM05D001444 ORTHO05D003766 2.1e-38 163.3 224 50.0
A06p02720 Brassica napus HOM05D001444 ORTHO05D003766 6.1e-38 161.8 165 55.2
BraA01t04474Z Brassica rapa HOM05D001444 ORTHO05D003766 2.0e-36 156.8 259 41.7
BcaB07g33551 Brassica carinata HOM05D001444 ORTHO05D003766 2.6e-36 156.4 210 47.1
CARHR080240 Cardamine hirsuta HOM05D001444 ORTHO05D003766 3.3e-36 156.0 265 41.1
Ciclev10000120m.g Citrus clementina HOM05D001444 ORTHO05D003766 1.7e-35 153.7 185 50.3
AT3G05780 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 1.2e-33 147.5 236 43.6
CsaV3_2G007040 Cucumis sativus L. HOM05D001444 ORTHO05D003766 2.0e-33 146.7 182 49.5
MD12G1206100 Malus domestica HOM05D001444 ORTHO05D003766 2.0e-33 146.7 182 48.9
QL03p039871 Quercus lobata HOM05D001444 ORTHO05D003766 2.0e-33 146.7 252 40.9
AT5G26860 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 2.6e-33 146.4 254 40.9
Gohir.D08G222800 Gossypium hirsutum HOM05D001444 ORTHO05D003766 7.7e-33 144.8 187 48.7
Gorai.004G236600 Gossypium raimondii HOM05D001444 ORTHO05D003766 7.7e-33 144.8 187 48.7
QL03p013621 Quercus lobata HOM05D001444 ORTHO05D003766 7.7e-33 144.8 252 40.5
BraA06t26633Z Brassica rapa HOM05D001444 ORTHO05D003766 1.0e-32 144.4 253 39.9
Carub.0006s2452 Capsella rubella HOM05D001444 ORTHO05D003766 1.0e-32 144.4 251 42.2
MD04G1193200 Malus domestica HOM05D001444 ORTHO05D003766 1.0e-32 144.4 180 48.3
Sp2g21140 Schrenkiella parvula HOM05D001444 ORTHO05D003766 1.0e-32 144.4 252 41.3
Thecc.05G322700 Theobroma cacao HOM05D001444 ORTHO05D003766 1.0e-32 144.4 187 47.6
CARHR186670 Cardamine hirsuta HOM05D001444 ORTHO05D003766 1.3e-32 144.1 249 41.8
ClCG00G002460 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.3e-32 144.1 182 47.8
ClCG02G014960 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.3e-32 144.1 182 47.8
Prupe.6G313300 Prunus persica HOM05D001444 ORTHO05D003766 1.3e-32 144.1 182 48.4
TWI56G1076 Tripterygium wilfordii HOM05D001444 ORTHO05D003766 1.3e-32 144.1 182 47.8
A06p37080 Brassica napus HOM05D001444 ORTHO05D003766 1.7e-32 143.7 251 40.2
C07p41360 Brassica napus HOM05D001444 ORTHO05D003766 1.7e-32 143.7 229 42.4
BolC1t05667H Brassica oleracea HOM05D001444 ORTHO05D003766 1.7e-32 143.7 246 42.7
Gohir.A08G205900 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.7e-32 143.7 187 48.7
Gohir.A11G273200 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.7e-32 143.7 187 47.1
Aqoxy7G03321 Aquilegia oxysepala HOM05D001444 ORTHO05D003766 2.2e-32 143.3 190 47.4
Gohir.D11G283300 Gossypium hirsutum HOM05D001444 ORTHO05D003766 2.2e-32 143.3 187 47.1
Gorai.007G306200 Gossypium raimondii HOM05D001444 ORTHO05D003766 2.2e-32 143.3 187 47.1
BcaNung03668 Brassica carinata HOM05D001444 ORTHO05D003766 2.9e-32 142.9 229 42.4
Prupe.2G038600 Prunus persica HOM05D001444 ORTHO05D003766 2.9e-32 142.9 177 48.6
Psat0s3400g0080 Pisum sativum HOM05D001444 ORTHO05D003766 3.8e-32 142.5 180 48.3
AL3G16520 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 5.0e-32 142.1 242 42.6
AL6G38730 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 5.0e-32 142.1 259 41.7
AL845U10010 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 5.0e-32 142.1 243 42.4
Potri.005G017600 Populus trichocarpa HOM05D001444 ORTHO05D003766 5.0e-32 142.1 180 47.8
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea HOM05D001444 ORTHO05D003766 6.5e-32 141.7 186 46.8
A02p38980 Brassica napus HOM05D001444 ORTHO05D003766 6.5e-32 141.7 180 47.2
C02p58570 Brassica napus HOM05D001444 ORTHO05D003766 6.5e-32 141.7 180 47.2
BolC2t11917H Brassica oleracea HOM05D001444 ORTHO05D003766 6.5e-32 141.7 180 47.2
Duzib177G0746 Durio zibethinus HOM05D001444 ORTHO05D003766 6.5e-32 141.7 178 48.3
Potri.013G008900 Populus trichocarpa HOM05D001444 ORTHO05D003766 6.5e-32 141.7 265 39.2
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea HOM05D001444 ORTHO05D003766 8.5e-32 141.4 190 46.3
CANSAT54G1984 Cannabis sativa HOM05D001444 ORTHO05D003766 8.5e-32 141.4 188 46.3
Thhalv10003617m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 8.5e-32 141.4 256 40.6
Ca_10170_v3 Cicer arietinum L. HOM05D001444 ORTHO05D003766 1.5e-31 140.6 178 48.9
FvH4_6g07420 Fragaria vesca HOM05D001444 ORTHO05D003766 1.5e-31 140.6 234 42.7
TPR.G2620 Trifolium pratense HOM05D001444 ORTHO05D003766 1.5e-31 140.6 180 47.8
BcaC03g17826 Brassica carinata HOM05D001444 ORTHO05D003766 1.9e-31 140.2 180 47.8
BcaNung03919 Brassica carinata HOM05D001444 ORTHO05D003766 1.9e-31 140.2 188 46.8
Cpa.g.sc48.159 Carica papaya HOM05D001444 ORTHO05D003766 1.9e-31 140.2 182 47.3
MD02G1284000 Malus domestica HOM05D001444 ORTHO05D003766 1.9e-31 140.2 182 47.8
ECA234G1965 Erigeron canadensis HOM05D001444 ORTHO05D003766 2.5e-31 139.8 186 45.7
Nn3g21688 Nelumbo nucifera HOM05D001444 ORTHO05D003766 2.5e-31 139.8 202 45.0
FAN14G2853 Fragaria x ananassa HOM05D001444 ORTHO05D003766 3.2e-31 139.4 180 46.7
Lalb_Chr21g0310321 Lupinus albus HOM05D001444 ORTHO05D003766 3.2e-31 139.4 196 45.4
BolC7t44666H Brassica oleracea HOM05D001444 ORTHO05D003766 4.2e-31 139.0 238 40.3
BraA02t08868Z Brassica rapa HOM05D001444 ORTHO05D003766 4.2e-31 139.0 180 47.2
PGR083G0370 Punica granatum HOM05D001444 ORTHO05D003766 4.2e-31 139.0 180 47.2
COL.COLO4_05554 Corchorus olitorius HOM05D001444 ORTHO05D003766 5.5e-31 138.7 197 43.1
Lalb_Chr02g0147821 Lupinus albus HOM05D001444 ORTHO05D003766 5.5e-31 138.7 186 46.8
GSVIVG01031236001 Vitis vinifera HOM05D001444 ORTHO05D003766 5.5e-31 138.7 188 46.3
Manes.08G111500 Manihot esculenta HOM05D001444 ORTHO05D003766 7.2e-31 138.3 205 43.9
Sed0006327 Sechium edule HOM05D001444 ORTHO05D003766 7.2e-31 138.3 200 44.5
Lsat_1_v5_gn_5_103920 Lactuca sativa HOM05D001444 ORTHO05D003766 9.4e-31 137.9 186 45.2
Eucgr.L00266 Eucalyptus grandis HOM05D001444 ORTHO05D003766 1.2e-30 137.5 251 39.8
FAN02G3316 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.2e-30 137.5 236 41.9
FAN05G3889 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.2e-30 137.5 250 41.6
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla HOM05D001444 ORTHO05D003766 1.2e-30 137.5 169 48.5
Medtr1g084020 Medicago truncatula HOM05D001444 ORTHO05D003766 1.2e-30 137.5 188 44.1
CSS0031861 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D003766 1.6e-30 137.1 169 47.9
FAN09G2106 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.6e-30 137.1 234 42.3
Actinidia01682 Actinidia chinensis HOM05D001444 ORTHO05D003766 2.1e-30 136.7 169 47.9
TAR633G2402 Trochodendron aralioides HOM05D001444 ORTHO05D003766 2.1e-30 136.7 187 45.5
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 2.1e-30 136.7 182 46.2
ATR0796G182 Amborella trichopoda HOM05D001444 ORTHO05D003766 2.7e-30 136.3 182 46.2
Cfa006700 Carpinus fangiana HOM05D001444 ORTHO05D003766 2.7e-30 136.3 182 47.3
CiPaw.07G029500 Carya illinoinensis HOM05D001444 ORTHO05D003766 2.7e-30 136.3 182 46.7
Nn4g25600 Nelumbo nucifera HOM05D001444 ORTHO05D003766 2.7e-30 136.3 188 45.7
SHI18059 Sapria himalayana HOM05D001444 ORTHO05D003766 2.7e-30 136.3 180 45.6
Oeu053708.1 Olea europaea HOM05D001444 ORTHO05D003766 3.6e-30 136.0 163 49.1
MSTRG.27942 Avicennia marina HOM05D001444 ORTHO05D003766 8.0e-30 134.8 220 41.8
HanXRQChr16g0513821 Helianthus annuus HOM05D001444 ORTHO05D003766 8.0e-30 134.8 188 42.6
VMungo0720G2265 Vigna mungo HOM05D001444 ORTHO05D003766 8.0e-30 134.8 178 47.2
Sabra13G0007500 Salix brachista HOM05D001444 ORTHO05D003766 1.4e-29 134.0 166 48.2
Duzib128G0547 Durio zibethinus HOM05D001444 ORTHO05D003766 2.3e-29 133.3 187 45.5
Glyma.20G097700 Glycine max HOM05D001444 ORTHO05D003766 2.3e-29 133.3 178 46.6
Phvul.007G201200 Phaseolus vulgaris HOM05D001444 ORTHO05D003766 2.3e-29 133.3 176 47.2
vmacro19754 Vaccinium macrocarpon HOM05D001444 ORTHO05D003766 2.3e-29 133.3 191 45.5
Cc02_g35000 Coffea canephora HOM05D001444 ORTHO05D003766 3.0e-29 132.9 188 45.2
Duzib106G0804 Durio zibethinus HOM05D001444 ORTHO05D003766 4.0e-29 132.5 181 44.2
Glyma.10G147200 Glycine max HOM05D001444 ORTHO05D003766 4.0e-29 132.5 178 46.1
Lj5g0020416 Lotus japonicus HOM05D001444 ORTHO05D003766 5.2e-29 132.1 178 46.6
CDE11G0937 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 6.7e-29 131.7 188 45.2
DCAR_017356 Daucus carota HOM05D001444 ORTHO05D003766 6.7e-29 131.7 253 39.1
Sc06g0005760 Simmondsia chinensis HOM05D001444 ORTHO05D003766 1.2e-28 131.0 160 46.9
SGA_v2.0_scaffold37G14611 Striga asiatica HOM05D001444 ORTHO05D003766 1.5e-28 130.6 165 46.7
BcaC08g43276 Brassica carinata HOM05D001444 ORTHO05D003766 7.5e-28 128.3 126 55.6
unitig_26.g9563 Utricularia gibba HOM05D001444 ORTHO05D003766 7.5e-28 128.3 164 44.5
SalBow2G0724 Salvia bowleyana HOM05D001444 ORTHO05D003766 9.7e-28 127.9 206 41.3
Sopen10g009280 Solanum pennellii HOM05D001444 ORTHO05D003766 2.2e-27 126.7 169 44.4
Solyc10g024320.2 Solanum lycopersicum HOM05D001444 ORTHO05D003766 2.8e-27 126.3 169 44.4
Aa31LG11G9790 Aethionema arabicum HOM05D001444 ORTHO05D003766 3.7e-27 125.9 236 40.7
Migut.N01380 Erythranthe guttata HOM05D001444 ORTHO05D003766 6.3e-27 125.2 219 39.3
PSO782G1742 Papaver somniferum HOM05D001444 ORTHO05D003766 6.3e-27 125.2 181 44.2
RcHm_v2.0_Chr3g0457021 Rosa chinensis HOM05D001444 ORTHO05D003766 8.2e-27 124.8 235 40.4
Dinv30892 Davidia involucrata HOM05D001444 ORTHO05D003766 1.1e-26 124.4 169 45.0
Haze_04062 Corylus avellana HOM05D001444 ORTHO05D003766 1.8e-26 123.6 168 47.0
PSO063G2884 Papaver somniferum HOM05D001444 ORTHO05D003766 3.1e-26 122.9 236 38.6
RcHm_v2.0_Chr1g0325611 Rosa chinensis HOM05D001444 ORTHO05D003766 4.1e-26 122.5 168 43.5
Zm00001eb331350 Zea mays HOM05D001444 ORTHO05D003766 1.6e-25 120.6 180 41.1
Rhsim05G0131900 Rhododendron simsii HOM05D001444 ORTHO05D003766 2.7e-25 119.8 217 40.1
FvH4_7g03300 Fragaria vesca HOM05D001444 ORTHO05D003766 5.9e-25 118.6 166 41.0
Zm00001eb111810 Zea mays HOM05D001444 ORTHO05D003766 7.7e-25 118.2 191 39.8
FAN03G3407 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.0e-24 117.9 180 39.4
EL10Ac4g09446 Beta vulgaris HOM05D001444 ORTHO05D003766 1.3e-24 117.5 145 45.5
Lj5A334G51 Lonicera japonica HOM05D001444 ORTHO05D003766 2.2e-24 116.7 166 42.8
Zm00001eb014570 Zea mays HOM05D001444 ORTHO05D003766 1.5e-23 114.0 157 42.7
BcaC09g47850 Brassica carinata HOM05D001444 ORTHO05D003766 1.9e-23 113.6 152 44.1
Dinv24440 Davidia involucrata HOM05D001444 ORTHO05D003766 2.5e-23 113.2 244 36.1
FAN06G0007 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.5e-23 113.2 169 40.2
Nitab4.5_0003894g0030 Nicotiana tabacum HOM05D001444 ORTHO05D003766 3.2e-23 112.8 230 37.4
AUR62006755 Chenopodium quinoa HOM05D001444 ORTHO05D003766 7.2e-23 111.7 144 45.8
FAN10G3276 Fragaria x ananassa HOM05D001444 ORTHO05D003766 7.2e-23 111.7 244 34.4
AUR62000399 Chenopodium quinoa HOM05D001444 ORTHO05D003766 9.4e-23 111.3 144 45.1
HPP92_027566 Vanilla planifolia HOM05D001444 ORTHO05D003766 1.2e-22 110.9 180 38.9
CAN.G2431.1 Capsicum annuum HOM05D001444 ORTHO05D003766 6.1e-22 108.6 188 39.9
TAR365G0568 Trochodendron aralioides HOM05D001444 ORTHO05D003766 6.1e-22 108.6 186 38.2
THA.LOC104820100 Tarenaya hassleriana HOM05D001444 ORTHO05D003766 3.0e-21 106.3 359 29.5
BcaB07g33552 Brassica carinata HOM05D001444 ORTHO05D003766 2.6e-20 103.2 67 83.6
MELO3C004189.2 Cucumis melo HOM05D001444 ORTHO05D003766 4.4e-20 102.4 142 46.5
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 1.7e-19 100.5 145 44.1
MD07G1050000 Malus domestica HOM05D001444 ORTHO05D003766 2.2e-19 100.1 224 38.8
Ah.03g134540 Amaranthus hybridus HOM05D001444 ORTHO05D003766 1.1e-18 97.8 214 37.4
DCAR_005419 Daucus carota HOM05D001444 ORTHO05D003766 1.8e-18 97.1 140 43.6
Oeu064819.1 Olea europaea HOM05D001444 ORTHO05D003766 3.1e-18 96.3 132 44.7
QL03p039924 Quercus lobata HOM05D001444 ORTHO05D003766 5.4e-18 95.5 129 45.0
QL03p013575 Quercus lobata HOM05D001444 ORTHO05D003766 5.9e-17 92.0 151 40.4
QL03p013604 Quercus lobata HOM05D001444 ORTHO05D003766 1.7e-16 90.5 125 44.0
SMO358G0399 Selaginella moellendorffii HOM05D001444 ORTHO05D003766 7.2e-15 85.1 175 31.4
Peaxi162Scf01208g00007 Petunia axillaris HOM05D001444 ORTHO05D003766 3.6e-14 82.8 128 40.6
BcaC08g43277 Brassica carinata HOM05D001444 ORTHO05D003766 3.0e-13 79.7 65 72.3
Pp3c13_13900 Physcomitrium patens HOM05D001444 ORTHO05D003766 4.0e-13 79.3 172 30.2
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis HOM05D001444 ORTHO05D003766 4.4e-12 75.9 191 29.8
C05p14480 Brassica napus HOM05D001444 ORTHO05D014980 4.4e-12 75.9 85 50.6
C08p03360 Brassica napus HOM05D001444 ORTHO05D014980 4.4e-12 75.9 85 50.6
C09p35940 Brassica napus HOM05D001444 ORTHO05D014980 4.4e-12 75.9 85 50.6
BolC8t47133H Brassica oleracea HOM05D001444 ORTHO05D014980 4.4e-12 75.9 85 50.6
BolC9t56426H Brassica oleracea HOM05D001444 ORTHO05D014980 4.4e-12 75.9 85 50.6
BolC9t58100H Brassica oleracea HOM05D001444 ORTHO05D014980 1.3e-11 74.3 86 47.7
Atru.chr2.221 Acer truncatum HOM05D001444 ORTHO05D003766 4.9e-11 72.4 123 37.4
Actinidia01509 Actinidia chinensis HOM05D001444 ORTHO05D003766 6.3e-11 72.0 65 50.8
Atru.chr2.183 Acer truncatum HOM05D001444 ORTHO05D003766 8.3e-11 71.6 171 35.7
HPP92_017244 Vanilla planifolia HOM05D001444 ORTHO05D003766 5.4e-10 68.9 56 57.1
Cfa024900 Carpinus fangiana HOM05D001444 ORTHO05D003766 2.7e-09 66.6 81 42.0
EL10Ac1g02045 Beta vulgaris HOM05D000232 ORTHO05D000145 3.5e-09 66.2 130 36.9
CBR_g37235 Chara braunii HOM05D001444 ORTHO05D003766 9.5e-07 58.2 149 30.2
C05p39200 Brassica napus HOM05D001444 ORTHO05D014980 2.1e-06 57.0 77 46.8
BolC5t32653H Brassica oleracea HOM05D001444 ORTHO05D014980 2.1e-06 57.0 77 46.8
C09p52310 Brassica napus HOM05D001444 ORTHO05D014980 6.1e-06 55.5 78 43.6


User provided reference genes

Program Settings