Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 4.5e-267 924.1 490 100.0
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 4.5e-267 924.1 490 100.0
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 4.5e-267 924.1 490 100.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.1e-223 780.0 500 85.2
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 7.6e-198 694.1 524 74.4
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 2.2e-197 692.6 493 78.3
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 5.3e-191 671.4 502 75.3
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.9e-191 671.0 518 74.1
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.3e-189 666.8 490 77.1
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 3.8e-173 612.1 495 71.7
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.1e-164 583.9 496 70.4
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 5.0e-157 558.5 498 65.3
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 4.7e-139 498.8 495 61.8
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.8e-130 468.4 374 72.7
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 4.4e-113 412.5 493 55.4
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.6e-102 377.5 496 51.8
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 7.6e-89 332.0 493 48.7
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.5e-84 317.8 289 67.1
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 8.2e-75 285.4 265 66.4
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.4e-74 284.6 184 87.0
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 2.0e-65 254.2 361 44.3
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 4.5e-65 253.1 284 52.1
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.3e-64 251.5 284 51.4
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 2.9e-64 250.4 260 55.8
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.9e-64 250.4 250 57.2
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 2.9e-64 250.4 250 57.2
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.8e-64 250.0 286 53.1
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 5.0e-64 249.6 366 47.3
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.1e-63 248.4 293 49.8
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.9e-63 247.7 381 44.1
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 2.5e-63 247.3 492 39.6
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.1e-62 244.2 248 56.0
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.7e-62 243.8 336 44.0
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 3.6e-62 243.4 349 48.4
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 7.9e-62 242.3 249 55.4
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.4e-61 241.5 369 47.4
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.3e-61 240.7 259 54.8
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 3.0e-61 240.4 217 63.6
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 3.9e-61 240.0 340 46.5
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.1e-61 239.6 252 57.9
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 6.7e-61 239.2 271 54.2
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.0e-60 237.7 304 51.0
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 3.3e-60 236.9 247 55.5
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 4.3e-60 236.5 255 53.7
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 5.7e-60 236.1 298 49.7
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 7.4e-60 235.7 261 52.5
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 7.4e-60 235.7 380 44.5
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 1.3e-59 235.0 341 45.7
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.7e-59 234.6 297 49.8
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 2.8e-59 233.8 254 53.1
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 3.7e-59 233.4 249 55.0
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 3.7e-59 233.4 267 50.6
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.7e-59 233.4 261 54.0
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 8.2e-59 232.3 259 52.1
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.1e-58 231.9 424 41.5
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 1.4e-58 231.5 348 42.0
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.4e-58 231.5 249 51.0
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.8e-58 231.1 256 52.7
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 2.4e-58 230.7 278 47.8
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 2.4e-58 230.7 245 53.9
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 2.4e-58 230.7 255 53.7
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.2e-57 228.4 359 41.2
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.5e-57 228.0 284 48.6
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 2.0e-57 227.6 264 52.7
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 2.0e-57 227.6 365 43.0
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 2.0e-57 227.6 245 52.7
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.4e-57 226.9 356 44.7
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 5.9e-57 226.1 370 42.2
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.7e-56 224.6 362 43.6
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.8e-56 223.4 248 50.8
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 5.0e-56 223.0 363 41.0
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 6.5e-56 222.6 381 42.0
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.4e-55 221.5 253 50.2
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.9e-55 221.1 344 45.1
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.9e-55 221.1 236 53.8
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.5e-55 220.7 248 53.2
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 3.2e-55 220.3 246 53.3
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 7.2e-55 219.2 215 58.1
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 7.2e-55 219.2 253 51.8
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.6e-54 216.9 245 52.7
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 4.7e-54 216.5 252 49.6
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.0e-53 215.3 308 47.1
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.8e-53 214.5 345 42.9
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.8e-53 214.5 273 47.3
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 3.9e-53 213.4 299 45.5
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 8.8e-53 212.2 378 41.3
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 8.8e-53 212.2 301 43.5
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 2.0e-52 211.1 399 38.8
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 7.4e-52 209.1 247 49.8
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.7e-51 208.0 259 51.4
BcaC08g42924 Brassica carinata HOM05D004411 ORTHO05D032367 1.8e-50 204.5 180 68.9
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.8e-50 204.5 247 50.2
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 2.4e-50 204.1 303 42.9
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 7.0e-50 202.6 409 36.2
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 3.8e-48 196.8 251 44.6
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 2.5e-47 194.1 248 50.4
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 2.1e-46 191.0 247 45.7
BolC6t35294H Brassica oleracea HOM05D004411 ORTHO05D032367 2.7e-46 190.7 213 58.7
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 4.0e-45 186.8 297 41.1
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 6.7e-45 186.0 177 59.9
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.1e-44 185.3 406 36.2
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 7.5e-44 182.6 262 44.3
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.2e-43 181.0 245 47.8
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 4.8e-43 179.9 250 44.4
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 1.4e-42 178.3 255 44.3
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 9.1e-42 175.6 386 36.5
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.2e-41 175.3 272 46.7
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 2.7e-41 174.1 126 77.8
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 2.7e-41 174.1 126 77.8
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 7.7e-41 172.6 215 47.0
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.1e-39 168.7 181 55.2
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.2e-39 167.2 269 40.1
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 5.5e-39 166.4 301 43.9
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.0e-37 162.2 242 42.6
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.0e-37 162.2 355 34.1
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.4e-37 161.8 387 33.3
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.5e-36 158.3 234 43.2
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 2.0e-36 157.9 210 45.7
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.6e-36 157.5 482 34.4
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 3.4e-36 157.1 208 47.6
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.1e-34 152.1 301 38.9
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.4e-34 151.0 260 37.7
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.2e-30 138.7 182 54.4
A09p64030 Brassica napus HOM05D004411 ORTHO05D032662 5.2e-29 133.3 126 62.7
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 2.0e-28 131.3 244 39.8
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 2.6e-28 131.0 138 52.9
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.6e-28 131.0 86 82.6
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.2e-27 127.9 274 36.1
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 3.7e-27 127.1 119 64.7
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.9e-27 126.7 180 42.8
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.2e-25 122.1 170 46.5
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.3e-24 118.6 250 35.2
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.6e-24 116.3 139 51.1
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.1e-23 115.5 200 37.0
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 6.8e-21 106.3 117 48.7
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.5e-20 105.1 195 36.9
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 3.4e-20 104.0 124 48.4
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.9e-19 100.9 117 48.7
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 8.3e-19 99.4 220 34.5
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 3.2e-18 97.4 117 47.0
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 5.0e-16 90.1 79 58.2
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 6.6e-16 89.7 92 55.4
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 6.6e-16 89.7 87 52.9
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 1.1e-15 89.0 196 35.7
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 1.5e-15 88.6 73 58.9
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 7.3e-15 86.3 117 46.2
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 2.3e-13 81.3 296 25.3
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 6.8e-13 79.7 207 29.5
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 2.9e-11 74.3 74 56.8
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 8.3e-11 72.8 220 32.7
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 1.1e-07 62.4 88 39.8
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.9e-07 61.6 148 30.4
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 1.6e-06 58.5 112 36.6
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 3.6e-06 57.4 115 33.0
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 3.6e-06 57.4 46 56.5


User provided reference genes

Program Settings