Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.1e-170 603.2 301 100.0
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.1e-170 603.2 301 100.0
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.1e-170 603.2 301 100.0
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.4e-162 576.2 301 95.3
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.6e-161 572.8 301 94.7
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 3.3e-151 538.5 301 89.7
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 4.5e-140 501.5 297 84.8
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 4.3e-135 485.0 301 82.1
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.6e-134 483.0 298 82.9
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.2e-132 476.9 305 80.7
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 1.5e-132 476.5 303 80.2
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 2.0e-132 476.1 305 80.7
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 2.0e-124 449.5 298 75.8
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 9.0e-117 424.1 287 72.5
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.2e-97 360.5 243 70.0
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.6e-97 360.1 288 62.2
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 2.7e-97 359.4 288 62.2
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.7e-97 358.6 299 60.2
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 1.8e-96 356.7 234 70.5
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 3.0e-96 355.9 286 62.6
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 3.9e-96 355.5 307 60.3
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 3.9e-96 355.5 244 68.9
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 5.2e-96 355.1 244 68.9
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 5.2e-96 355.1 285 63.5
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 6.7e-96 354.8 237 70.5
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 6.7e-96 354.8 225 75.1
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 6.7e-96 354.8 249 67.9
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 8.8e-96 354.4 297 62.0
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 1.1e-95 354.0 249 67.9
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.1e-95 354.0 286 62.6
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.5e-95 353.6 237 69.6
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.4e-95 352.1 241 68.9
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 5.7e-95 351.7 238 69.3
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 1.3e-94 350.5 241 69.7
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 4.8e-94 348.6 243 67.5
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 4.8e-94 348.6 238 67.2
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.1e-93 347.4 256 65.2
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 1.1e-93 347.4 283 59.7
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 1.4e-93 347.1 256 65.6
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.4e-93 347.1 231 70.1
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 1.8e-93 346.7 251 65.7
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 1.8e-93 346.7 239 69.9
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 2.4e-93 346.3 262 65.3
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 2.4e-93 346.3 223 72.2
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 7.0e-93 344.7 223 71.3
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 7.0e-93 344.7 242 68.6
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 1.2e-92 344.0 285 61.4
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.6e-92 343.6 249 69.1
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 2.0e-92 343.2 270 62.2
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 2.0e-92 343.2 223 71.7
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 2.6e-92 342.8 284 60.2
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 2.6e-92 342.8 251 66.1
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 3.5e-92 342.4 234 70.1
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.0e-91 340.9 246 65.9
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 1.3e-91 340.5 246 65.9
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.7e-91 340.1 218 72.9
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.7e-91 340.1 324 57.1
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 2.2e-91 339.7 273 62.6
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 2.2e-91 339.7 245 66.1
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 6.5e-91 338.2 238 67.2
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 8.5e-91 337.8 248 65.3
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.1e-90 337.4 225 70.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.9e-90 336.7 230 69.6
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 3.2e-90 335.9 282 59.2
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 5.5e-90 335.1 234 66.7
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 5.5e-90 335.1 291 59.8
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.2e-89 334.0 233 67.0
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 2.1e-89 333.2 216 70.8
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 2.7e-89 332.8 223 67.3
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.8e-88 330.1 283 56.2
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 2.3e-88 329.7 219 68.0
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 3.0e-88 329.3 301 56.5
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 6.7e-88 328.2 233 66.1
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.6e-87 326.2 235 63.4
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 2.8e-86 322.8 240 61.2
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 1.8e-85 320.1 218 66.1
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 5.3e-85 318.5 249 63.1
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 9.1e-85 317.8 245 60.8
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.6e-84 317.0 216 67.6
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 3.5e-84 315.8 260 60.8
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 7.7e-84 314.7 266 57.1
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 2.2e-83 313.2 216 68.1
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 3.2e-82 309.3 280 57.5
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 2.3e-80 303.1 252 57.9
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 2.3e-80 303.1 201 71.1
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 9.8e-79 297.7 214 63.1
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 7.0e-77 291.6 238 61.3
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 1.2e-76 290.8 192 72.4
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.7e-75 287.0 174 76.4
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 5.0e-75 285.4 177 74.6
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 5.5e-74 282.0 284 53.9
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 2.1e-73 280.0 177 74.6
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 2.1e-73 280.0 252 57.9
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 4.7e-73 278.9 216 59.3
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.0e-72 277.7 173 75.1
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.6e-71 273.1 176 71.6
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.2e-70 270.0 180 69.4
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.4e-69 267.3 238 55.0
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 3.1e-69 266.2 203 62.6
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 9.2e-69 264.6 183 67.2
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.3e-59 234.2 164 68.9
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 1.0e-51 208.0 221 44.8
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.1e-50 204.5 221 43.9
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 4.4e-47 192.6 165 58.2
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.3e-46 191.0 124 71.8
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.7e-46 189.5 124 71.0
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 4.9e-46 189.1 226 42.0
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.3e-43 181.0 212 46.2
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.7e-43 180.6 224 44.2
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 2.3e-43 180.3 143 57.3
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 7.3e-42 175.3 121 65.3
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 1.7e-38 164.1 116 67.2
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 2.5e-34 150.2 97 69.1
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 2.5e-34 150.2 97 69.1
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 7.3e-34 148.7 139 54.0
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.0e-27 128.3 107 53.3
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 1.7e-27 127.5 131 54.2
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 1.7e-27 127.5 131 54.2
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 2.3e-27 127.1 106 58.5
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 6.4e-22 109.0 152 44.1
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.0e-19 101.7 61 72.1
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.6e-17 94.4 75 60.0
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.4e-13 81.3 56 66.1
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.9e-13 80.9 132 38.6
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 2.7e-12 77.0 123 41.5
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 3.5e-12 76.6 109 45.0
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 2.3e-11 73.9 118 40.7
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 5.1e-11 72.8 50 66.0
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 5.3e-08 62.8 96 38.5
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 4.5e-07 59.7 48 56.2


User provided reference genes

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