Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 3.2e-74 281.6 134 100.0
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-73 279.6 133 99.2
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 5.7e-71 270.8 133 97.0
BraA06t23539Z Brassica rapa HOM05D050673 ORTHO05D033430 7.0e-29 131.0 75 84.0
A06p03280 Brassica napus HOM05D050673 ORTHO05D033430 2.7e-28 129.0 75 82.7
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-26 122.5 56 92.9
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 9.5e-26 120.6 59 88.1
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.2e-25 120.2 59 86.4
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-25 119.4 59 86.4
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-25 119.0 59 88.1
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.8e-25 119.0 59 88.1
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 3.6e-25 118.6 59 84.7
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 6.4e-22 107.8 103 52.4
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 8.3e-22 107.5 103 53.4
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.1e-21 107.1 103 52.4
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.9e-21 106.3 103 51.5
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-21 106.3 103 51.5
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-21 106.3 103 51.5
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.9e-21 106.3 103 51.5
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.9e-21 106.3 103 51.5
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.9e-21 106.3 103 51.5
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.4e-21 105.9 103 51.5
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 3.2e-21 105.5 103 52.4
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 4.1e-21 105.1 103 51.5
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 5.4e-21 104.8 103 51.5
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 5.4e-21 104.8 103 51.5
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 5.4e-21 104.8 103 51.5
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.4e-21 104.8 53 81.1
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 7.1e-21 104.4 103 51.5
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 9.2e-21 104.0 59 71.2
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.2e-20 103.6 103 51.5
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 2.1e-20 102.8 103 52.4
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.7e-20 102.4 103 51.5
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.7e-20 102.4 103 50.5
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 3.5e-20 102.1 103 51.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 3.5e-20 102.1 103 48.5
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 3.5e-20 102.1 103 48.5
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 3.5e-20 102.1 103 50.5
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 4.6e-20 101.7 103 47.6
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.6e-20 101.7 103 50.5
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.0e-20 101.3 103 49.5
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.0e-20 101.3 103 49.5
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 6.0e-20 101.3 59 69.5
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 6.0e-20 101.3 103 49.5
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.0e-20 101.3 59 69.5
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 7.8e-20 100.9 103 49.5
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.0e-19 100.5 103 50.5
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.0e-19 100.5 103 49.5
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.0e-19 100.5 103 49.5
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.0e-19 100.5 59 67.8
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.3e-19 100.1 53 75.5
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.3e-19 100.1 103 48.5
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.3e-19 100.1 53 75.5
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.3e-19 100.1 53 75.5
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.3e-19 100.1 55 74.5
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.7e-19 99.8 59 67.8
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 2.3e-19 99.4 59 71.2
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.3e-19 99.4 103 49.5
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.3e-19 99.4 103 48.5
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 2.3e-19 99.4 103 49.5
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.0e-19 99.0 55 74.5
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.0e-19 99.0 55 74.5
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 3.0e-19 99.0 59 71.2
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 3.0e-19 99.0 59 69.5
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.0e-19 99.0 103 48.5
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.0e-19 99.0 103 47.6
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.0e-19 99.0 103 47.6
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 3.9e-19 98.6 103 50.5
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 3.9e-19 98.6 103 47.6
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.9e-19 98.6 103 51.5
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 3.9e-19 98.6 103 48.5
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.9e-19 98.6 59 69.5
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 3.9e-19 98.6 59 67.8
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.9e-19 98.6 103 48.5
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.9e-19 98.6 103 48.5
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 5.1e-19 98.2 53 75.5
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 5.1e-19 98.2 103 47.6
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 5.1e-19 98.2 59 69.5
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 6.6e-19 97.8 59 66.1
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 6.6e-19 97.8 59 67.8
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.6e-19 97.8 59 66.1
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 6.6e-19 97.8 103 47.6
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.6e-19 97.4 103 48.5
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.6e-19 97.4 103 48.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.6e-19 97.4 103 48.5
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.6e-19 97.4 103 48.5
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 8.6e-19 97.4 103 48.5
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 8.6e-19 97.4 103 51.5
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.1e-18 97.1 59 67.8
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 46.6
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.1e-18 97.1 59 67.8
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 48.5
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 48.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 48.5
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 48.5
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 51.5
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 51.5
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 49.5
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 48.5
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.1e-18 97.1 103 49.5
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.9e-18 96.3 55 72.7
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.9e-18 96.3 53 73.6
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.9e-18 96.3 103 49.5
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.9e-18 96.3 103 47.6
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.9e-18 96.3 103 47.6
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 1.9e-18 96.3 53 73.6
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.9e-18 96.3 77 55.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.9e-18 96.3 103 48.5
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.9e-18 96.3 53 75.5
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.9e-18 96.3 103 46.6
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.5e-18 95.9 103 45.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.5e-18 95.9 103 47.6
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.5e-18 95.9 103 47.6
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 2.5e-18 95.9 59 67.8
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 2.5e-18 95.9 103 48.5
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 3.3e-18 95.5 59 62.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 3.3e-18 95.5 103 45.6
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 3.3e-18 95.5 103 47.6
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 4.3e-18 95.1 103 46.6
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 4.3e-18 95.1 56 66.1
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 4.3e-18 95.1 103 47.6
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 4.3e-18 95.1 103 44.7
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 5.6e-18 94.7 103 46.6
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 5.6e-18 94.7 103 47.6
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 7.3e-18 94.4 103 45.6
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 7.3e-18 94.4 53 69.8
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 9.5e-18 94.0 53 69.8
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.5e-18 94.0 103 45.6
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 9.5e-18 94.0 103 44.7
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.2e-17 93.6 53 69.8
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.2e-17 93.6 103 46.6
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.2e-17 93.6 58 65.5
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.6e-17 93.2 59 66.1
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.1e-17 92.8 59 67.8
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.1e-17 92.8 58 74.1
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.1e-17 92.8 103 46.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.8e-17 92.4 103 43.7
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.8e-17 92.4 103 43.7
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.8e-17 92.4 77 54.5
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 2.8e-17 92.4 103 43.7
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 6.2e-17 91.3 53 71.7
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 8.1e-17 90.9 69 59.4
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-16 90.5 53 69.8
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-16 90.5 53 69.8
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.8e-16 89.7 53 69.8
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.8e-16 89.7 53 69.8
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.3e-16 89.4 55 65.5
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.3e-16 89.4 53 67.9
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.3e-16 89.4 53 69.8
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.0e-16 88.6 55 61.8
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.3e-14 83.6 58 56.9
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.7e-14 83.2 55 67.3
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 8.4e-14 80.9 55 60.0
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 2.1e-12 76.3 50 62.0
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.6e-12 75.1 55 52.7
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 7.8e-12 74.3 45 62.2
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.3e-11 73.6 44 72.7
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 3.0e-11 72.4 44 72.7
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 6.6e-11 71.2 55 52.7
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 7.3e-10 67.8 43 74.4
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 9.6e-10 67.4 43 74.4
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.6e-09 66.6 55 49.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.6e-09 65.5 55 45.5
C09p33270 Brassica napus HOM05D008292 ORTHO05D003352 1.7e-06 56.6 47 53.2
BolC9t56163H Brassica oleracea HOM05D008292 ORTHO05D003352 1.7e-06 56.6 47 53.2
BolC6t35618H Brassica oleracea HOM05D003839 ORTHO05D003352 2.2e-06 56.2 56 44.6
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.8e-06 55.5 35 65.7
A01p17040 Brassica napus HOM05D008292 ORTHO05D003352 6.4e-06 54.7 47 51.1
BraA09t39508Z Brassica rapa HOM05D008292 ORTHO05D003352 6.4e-06 54.7 47 51.1
BcaC03g15888 Brassica carinata HOM05D008292 ORTHO05D003352 8.4e-06 54.3 73 41.1


User provided reference genes

Program Settings