Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 7.3e-124 447.2 221 100.0
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 1.0e-117 426.8 222 96.8
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 1.2e-110 403.3 200 100.0
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 1.1e-108 396.7 201 97.0
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 1.3e-99 366.7 195 93.8
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 1.5e-97 359.8 193 92.2
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 1.6e-91 339.7 167 100.0
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 1.6e-91 339.7 167 100.0
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 6.9e-90 334.3 193 85.5
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 1.1e-87 327.0 167 95.2
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 3.2e-87 325.5 167 95.2
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 9.7e-68 260.8 198 65.7
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 3.8e-64 248.8 166 66.9
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 1.5e-63 246.9 174 63.2
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 1.5e-63 246.9 182 62.6
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 5.5e-63 245.0 161 68.9
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 7.2e-63 244.6 202 55.9
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 9.4e-63 244.2 165 66.7
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 1.6e-62 243.4 161 67.7
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 3.6e-62 242.3 165 67.3
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 6.1e-62 241.5 165 67.3
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 1.0e-61 240.7 181 63.0
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.8e-61 240.0 185 61.6
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.8e-61 240.0 199 55.8
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 2.3e-61 239.6 165 66.7
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 2.3e-61 239.6 193 58.0
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 4.0e-61 238.8 167 63.5
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 5.2e-61 238.4 161 67.1
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 8.8e-61 237.7 165 66.7
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 8.8e-61 237.7 161 68.3
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 1.1e-60 237.3 170 63.5
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 1.1e-60 237.3 181 60.2
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 2.6e-60 236.1 182 61.5
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 7.5e-60 234.6 165 63.6
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 1.3e-59 233.8 165 64.8
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.3e-59 233.8 161 66.5
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 1.3e-59 233.8 161 67.1
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 1.7e-59 233.4 179 60.3
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.2e-59 233.0 161 65.2
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 2.8e-59 232.6 176 63.1
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 2.8e-59 232.6 166 62.7
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.7e-59 232.3 164 64.0
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 3.7e-59 232.3 165 63.0
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 4.8e-59 231.9 170 64.1
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 4.8e-59 231.9 163 65.0
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 4.8e-59 231.9 165 63.6
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 4.8e-59 231.9 190 58.9
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 4.8e-59 231.9 190 58.9
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 6.3e-59 231.5 166 62.0
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 6.3e-59 231.5 192 57.8
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 6.3e-59 231.5 178 62.4
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 6.3e-59 231.5 192 57.8
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 2.4e-58 229.6 189 56.6
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 2.4e-58 229.6 176 61.9
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.1e-58 229.2 165 61.8
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.1e-58 228.8 166 61.4
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 4.1e-58 228.8 163 63.2
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 4.1e-58 228.8 180 57.8
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 4.1e-58 228.8 166 62.7
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 4.1e-58 228.8 170 60.6
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 5.3e-58 228.4 165 61.8
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 5.3e-58 228.4 179 59.2
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 7.0e-58 228.0 165 61.8
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 9.1e-58 227.6 168 62.5
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 1.2e-57 227.3 165 62.4
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 1.2e-57 227.3 165 63.6
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 1.2e-57 227.3 168 62.5
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 1.6e-57 226.9 173 59.5
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.0e-57 226.5 164 61.0
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 2.0e-57 226.5 165 63.0
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 2.7e-57 226.1 207 53.6
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 5.9e-57 224.9 163 63.8
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 5.9e-57 224.9 183 58.5
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 5.9e-57 224.9 161 62.7
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 5.9e-57 224.9 161 62.1
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 7.7e-57 224.6 165 61.2
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 7.7e-57 224.6 187 56.7
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 1.0e-56 224.2 183 57.4
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.0e-56 224.2 180 60.6
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 1.0e-56 224.2 184 58.2
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.7e-56 223.4 165 62.4
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.2e-56 223.0 179 57.0
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 2.9e-56 222.6 161 63.4
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 2.9e-56 222.6 173 60.7
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 8.5e-56 221.1 184 55.4
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 8.5e-56 221.1 161 62.7
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 1.5e-55 220.3 161 61.5
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 7.2e-55 218.0 184 54.9
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 2.1e-54 216.5 178 59.6
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 6.1e-54 214.9 157 61.1
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 6.8e-53 211.5 167 56.9
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 5.7e-52 208.4 165 60.0
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 1.4e-50 203.8 173 57.8
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 2.4e-50 203.0 188 55.3
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.1e-50 202.2 161 59.0
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 1.7e-48 196.8 179 54.2
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 2.5e-47 193.0 161 58.4
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 2.3e-45 186.4 137 62.0
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 2.7e-41 172.9 122 63.1
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 2.3e-40 169.9 156 53.2
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 4.3e-39 165.6 146 50.7
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 8.0e-38 161.4 168 47.6
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 1.5e-36 157.1 128 58.6
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 4.4e-36 155.6 124 58.9
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 4.4e-36 155.6 128 57.0
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 1.4e-34 150.6 113 60.2
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 1.2e-33 147.5 167 44.3
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 2.0e-33 146.7 150 50.7
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 1.3e-32 144.1 111 59.5
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 3.0e-32 142.9 92 67.4
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.8e-29 133.7 107 56.1
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 3.1e-29 132.9 127 52.0
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 2.2e-27 126.7 144 43.8
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 3.6e-22 109.4 211 30.8
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 6.2e-22 108.6 57 87.7
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 6.8e-21 105.1 172 34.3
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 4.1e-18 95.9 166 36.7
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 4.7e-14 82.4 53 69.8
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 4.7e-14 82.4 53 69.8
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 2.6e-12 76.6 53 66.0
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 2.6e-12 76.6 50 70.0
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.9e-11 72.4 54 61.1
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.3e-07 59.7 38 63.2


User provided reference genes

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