Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p04640 Brassica napus HOM05D053206 ORTHO05D042220 1.6e-42 175.6 85 100.0
BraA01t00239Z Brassica rapa HOM05D053206 ORTHO05D042220 1.1e-27 126.3 83 75.9
CARHR189850 Cardamine hirsuta HOM05D001419 ORTHO05D001376 9.0e-14 80.1 71 59.2
AL6G34970 Arabidopsis lyrata HOM05D001419 ORTHO05D001376 7.2e-11 70.5 48 68.8
Aa31LG8G2550 Aethionema arabicum HOM05D000710 ORTHO05D000336 1.6e-10 69.3 67 56.7
AT5G23700 Arabidopsis thaliana HOM05D001419 ORTHO05D001376 2.3e-09 65.5 42 76.2
Ciclev10031078m.g Citrus clementina HOM05D001419 ORTHO05D001376 3.9e-09 64.7 71 52.1
Carub.0005s1503 Capsella rubella HOM05D001419 ORTHO05D001376 6.7e-09 63.9 48 64.6
Carub.0006s2145 Capsella rubella HOM05D001419 ORTHO05D001376 8.8e-09 63.5 50 64.0
QL10p000923 Quercus lobata HOM05D001419 ORTHO05D001376 1.1e-08 63.2 71 49.3
Sabra12G0077800 Salix brachista HOM05D001419 ORTHO05D001376 1.1e-08 63.2 71 50.7
Haze_07114 Corylus avellana HOM05D001419 ORTHO05D001376 1.9e-08 62.4 71 47.9
FAN13G1977 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.5e-08 62.0 74 44.6
FAN18G1957 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.5e-08 62.0 74 44.6
CSS0026667 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 4.3e-08 61.2 71 47.9
CSS0009563 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 5.7e-08 60.8 69 50.7
Actinidia30595 Actinidia chinensis HOM05D001419 ORTHO05D001376 7.4e-08 60.5 71 47.9
arahy.Tifrunner.gnm1.ann1.GTVX5U Arachis hypogaea HOM05D001419 ORTHO05D001376 7.4e-08 60.5 54 64.8
LjContig00470g0006858 Lotus japonicus HOM05D001419 ORTHO05D001376 7.4e-08 60.5 71 49.3
Cfa018722 Carpinus fangiana HOM05D001419 ORTHO05D001376 9.7e-08 60.1 71 47.9
THA.LOC104818173 Tarenaya hassleriana HOM05D001419 ORTHO05D001376 1.3e-07 59.7 42 64.3
Hund02495 Selenicereus undatus HOM05D001419 ORTHO05D001376 1.7e-07 59.3 69 47.8
arahy.Tifrunner.gnm1.ann1.EB1MMR Arachis hypogaea HOM05D001419 ORTHO05D001376 2.8e-07 58.5 61 55.7
RcHm_v2.0_Chr7g0188961 Rosa chinensis HOM05D001419 ORTHO05D001376 2.8e-07 58.5 71 45.1
CSS0017420 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 3.7e-07 58.2 67 47.8
FvH4_5g09200 Fragaria vesca HOM05D001419 ORTHO05D001376 3.7e-07 58.2 71 45.1
MD13G1129100 Malus domestica HOM05D001419 ORTHO05D001376 3.7e-07 58.2 71 47.9
CAN.G843.26 Capsicum annuum HOM05D001419 ORTHO05D001376 4.8e-07 57.8 71 45.1
arahy.Tifrunner.gnm1.ann1.VH54GQ Arachis hypogaea HOM05D001419 ORTHO05D001376 6.3e-07 57.4 54 64.8
MBI11_g43871_MAGBIO Magnolia biondii HOM05D001419 ORTHO05D001376 6.3e-07 57.4 43 62.8
ClCG03G004000 Citrullus lanatus HOM05D001419 ORTHO05D001376 8.2e-07 57.0 88 44.3
vmacro01028 Vaccinium macrocarpon HOM05D001419 ORTHO05D001376 8.2e-07 57.0 63 49.2
MD06G1132600 Malus domestica HOM05D001419 ORTHO05D001376 1.1e-06 56.6 71 43.7
A05p20330 Brassica napus HOM05D001035 ORTHO05D013385 1.4e-06 56.2 27 92.6
Migut.K01042 Erythranthe guttata HOM05D001419 ORTHO05D001376 1.4e-06 56.2 71 47.9
MD16G1129000 Malus domestica HOM05D001419 ORTHO05D001376 1.4e-06 56.2 71 45.1
CSS0002764 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 1.8e-06 55.8 67 46.3
THA.LOC104808047 Tarenaya hassleriana HOM05D001419 ORTHO05D001376 1.8e-06 55.8 69 52.2
COL.COLO4_16706 Corchorus olitorius HOM05D001419 ORTHO05D001376 2.4e-06 55.5 48 54.2
FAN04G1873 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.4e-06 55.5 63 47.6
Rhsim07G0176600 Rhododendron simsii HOM05D001419 ORTHO05D001376 2.4e-06 55.5 67 46.3
vmacro05063 Vaccinium macrocarpon HOM05D001419 ORTHO05D001376 2.4e-06 55.5 67 46.3
FAN08G1260 Fragaria x ananassa HOM05D001419 ORTHO05D001376 4.1e-06 54.7 63 47.6
Peaxi162Scf00314g00524 Petunia axillaris HOM05D001419 ORTHO05D001376 4.1e-06 54.7 71 45.1
TWI36G1167 Tripterygium wilfordii HOM05D001419 ORTHO05D001376 4.1e-06 54.7 71 43.7
arahy.Tifrunner.gnm1.ann1.UB3YHQ Arachis hypogaea HOM05D001419 ORTHO05D001376 5.3e-06 54.3 61 50.8
Cpa.g.c28892 Carica papaya HOM05D001419 ORTHO05D001376 5.3e-06 54.3 61 52.5
CiPaw.05G102800 Carya illinoinensis HOM05D001419 ORTHO05D001376 5.3e-06 54.3 51 54.9
Lj6A836G34 Lonicera japonica HOM05D001419 ORTHO05D001376 5.3e-06 54.3 71 43.7
Manes.06G125500 Manihot esculenta HOM05D001419 ORTHO05D001376 5.3e-06 54.3 48 54.2
AT4G25070 Arabidopsis thaliana HOM05D001419 ORTHO05D001376 6.9e-06 53.9 70 50.0
Glyma.20G250000 Glycine max HOM05D001419 ORTHO05D001376 6.9e-06 53.9 51 54.9
BraA01t01587Z Brassica rapa HOM05D001419 ORTHO05D001376 9.1e-06 53.5 50 62.0
Peaxi162Scf00128g01744 Petunia axillaris HOM05D001419 ORTHO05D001376 9.1e-06 53.5 71 46.5


User provided reference genes

Program Settings