Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 2137.8 1073 100.0
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 2102.4 1073 98.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 2096.6 1074 98.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 2095.1 1073 98.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 2074.3 1074 97.4
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 2014.2 1081 94.6
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1942.9 1087 89.9
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1908.3 1083 89.8
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1903.3 1084 88.6
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1897.1 1082 88.2
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1889.8 1083 88.6
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1831.6 1087 84.5
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1823.5 1083 84.7
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1823.1 1087 84.1
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1814.3 1087 83.7
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1814.3 1086 84.2
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1803.1 1083 83.7
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1801.2 1087 83.5
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1799.3 1083 83.7
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1799.3 1093 82.8
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1796.2 1073 83.5
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1795.8 1083 83.4
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1795.4 1083 83.4
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1792.7 1083 83.0
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1790.4 1083 83.4
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1790.0 1081 83.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1775.0 1092 81.8
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1773.4 1088 82.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1773.4 1089 81.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1767.3 1085 82.3
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1758.8 1142 78.5
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1682.5 1085 77.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1664.0 1090 76.9
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1663.7 1090 76.9
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1084 76.0
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1090 76.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1653.6 1089 76.5
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1648.6 1016 78.9
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1087 76.3
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1645.9 1077 76.8
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1645.6 1090 75.9
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1643.6 1074 76.7
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1088 76.4
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1031 78.9
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1639.4 1067 76.0
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1085 76.1
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1121 74.1
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1069 76.0
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1634.4 1088 75.9
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1078 74.9
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1099 74.4
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1630.5 1070 75.9
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1629.0 1088 75.9
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1627.8 1078 75.4
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1089 75.4
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1062 76.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1093 75.5
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1004 79.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1621.7 1081 75.7
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1086 74.3
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1098 74.1
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1090 75.5
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1175 70.6
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1607.4 1079 73.8
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1605.9 1043 75.9
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1605.9 1002 78.0
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1602.0 1006 77.0
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1087 74.4
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1597.0 1089 73.8
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1595.1 1084 74.7
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1595.1 1087 73.1
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1088 72.9
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1593.6 992 78.4
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1591.6 1072 74.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1591.2 1043 75.9
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1586.2 1083 73.0
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1078 73.7
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1581.6 1087 73.6
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1022 75.8
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1580.5 1063 72.9
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1578.5 987 77.3
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1082 73.1
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1575.1 1073 73.2
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1573.1 987 76.5
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1568.1 1069 72.7
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1567.7 1072 72.3
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1567.7 996 76.5
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1567.4 987 76.8
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1566.2 1073 73.9
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1565.4 1081 72.2
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1562.7 1077 72.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1562.4 1082 72.2
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1561.2 1103 72.0
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1555.8 1061 72.3
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1551.2 1009 74.2
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1550.8 1082 71.4
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1546.6 1077 71.8
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1543.9 1078 72.1
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1520.4 1096 69.5
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1519.2 1077 71.0
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1518.4 1077 70.9
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1510.7 1113 69.5
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1498.4 1195 64.5
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1495.3 1167 66.2
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1483.4 1060 69.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1453.7 969 73.0
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1452.2 1118 67.9
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1435.2 919 76.1
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1424.1 1080 68.3
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1408.3 874 78.4
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1407.5 1022 67.1
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1385.9 1004 69.2
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1360.5 1037 64.3
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1321.6 962 66.5
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1303.5 722 90.6
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1293.1 1107 63.0
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1292.3 1107 62.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1279.2 802 77.6
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1245.7 1004 62.4
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1159.4 1060 58.0
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1146.3 846 68.7
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1115.5 748 73.8
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1113.6 1048 53.7
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1097.8 1045 53.3
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1096.3 750 74.4
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1081.2 988 55.4
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 3.0e-287 992.3 739 66.8
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.6e-272 943.3 885 55.8
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.5e-257 891.7 774 57.4
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.2e-256 890.6 877 55.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 4.3e-254 882.1 584 73.3
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.0e-251 873.2 596 73.0
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.7e-240 836.3 972 44.8
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.7e-210 737.3 671 55.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 7.0e-196 688.7 642 56.7
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 6.1e-192 675.6 704 51.3
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.9e-181 639.4 367 82.0
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.1e-170 602.8 415 72.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.6e-169 599.4 532 59.8
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 8.6e-162 575.5 499 64.5
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 4.3e-161 573.2 422 70.1
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.6e-155 553.1 338 81.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 6.2e-152 542.7 1045 35.6
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 3.9e-146 523.5 393 63.4
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.5e-145 520.8 479 62.2
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 4.2e-132 476.9 397 61.2
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 9.3e-124 449.1 309 70.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.8e-120 437.6 324 65.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 3.6e-115 420.6 398 58.5
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 4.8e-104 383.6 1005 28.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 4.5e-102 377.1 970 29.4
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.9e-101 374.4 952 28.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 5.5e-100 370.2 227 78.9
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.7e-96 357.5 273 70.7
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.8e-88 331.3 915 29.8
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 8.0e-75 286.6 159 84.3
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-56 225.3 222 53.2
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 3.0e-53 214.9 846 23.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 4.7e-51 207.6 335 34.6
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-49 203.0 310 42.3
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.2e-43 183.0 220 51.4
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 2.8e-43 181.8 124 73.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-39 169.1 155 55.5
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-39 168.3 142 59.2
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 6.6e-37 160.6 154 55.8
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 8.7e-37 160.2 276 37.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.3e-36 157.9 149 55.0
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.2e-32 145.6 134 59.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 4.9e-32 144.4 467 25.1
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 2.1e-30 139.0 181 40.3
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.5e-25 122.9 435 25.7
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 2.0e-25 122.5 111 55.0
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-20 106.7 80 65.0
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 5.6e-20 104.4 151 49.7
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.2e-15 88.6 83 56.6
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.5e-12 79.0 54 63.0
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.2e-11 75.9 138 39.1
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.1e-10 73.6 51 66.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.9e-07 62.8 45 64.4
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 4.2e-07 61.6 36 72.2
A02p03970 Brassica napus HOM05D018909 ORTHO05D016798 5.5e-07 61.2 52 71.2
A05p09840 Brassica napus HOM05D018909 ORTHO05D016798 5.5e-07 61.2 52 71.2
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.2e-06 60.1 164 39.0
A03p60340 Brassica napus HOM05D037741 ORTHO05D016798 1.6e-06 59.7 52 71.2


User provided reference genes

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