Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1716.4 825 100.0
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1711.8 826 99.9
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1697.6 825 99.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1664.8 825 97.2
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1649.0 825 96.4
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1636.3 828 96.0
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1607.0 840 92.9
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1577.4 840 91.2
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1576.6 828 91.4
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1568.5 840 90.8
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1560.8 840 89.9
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1552.7 838 90.6
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1551.2 842 89.7
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1450.3 839 85.0
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1362.1 839 79.0
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1226.5 842 70.5
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1218.4 831 70.0
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1216.1 837 69.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1212.6 837 69.1
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1211.4 840 68.6
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1208.0 843 69.4
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1202.6 833 69.6
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1199.5 837 69.1
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1194.5 835 68.7
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1193.7 833 67.9
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1193.7 837 68.8
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1189.1 841 68.0
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1182.5 832 67.8
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1180.2 832 68.0
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1179.9 840 67.6
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1179.5 828 68.0
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1176.8 828 67.5
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1176.0 839 67.2
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1172.1 834 67.1
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1170.6 831 67.9
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1169.8 826 67.6
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1169.1 829 67.3
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1169.1 834 67.9
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1166.4 831 67.1
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1166.4 838 67.1
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1162.1 834 67.3
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1161.0 824 67.7
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1160.2 831 66.9
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1156.4 827 66.6
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1156.0 835 67.7
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1155.6 827 67.0
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1155.6 834 66.4
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1154.8 827 66.5
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1154.0 835 66.9
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1152.9 835 66.6
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1152.1 834 65.9
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1151.7 834 65.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1150.2 835 66.5
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1149.4 830 66.7
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1149.0 839 65.8
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1149.0 835 66.6
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1147.5 833 66.1
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1147.5 841 66.3
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1147.1 841 66.1
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1146.7 828 66.8
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1146.7 830 65.2
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1145.6 835 66.5
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1145.2 839 65.9
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1145.2 831 66.8
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 842 65.8
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1142.9 839 65.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1142.5 832 64.9
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1142.1 830 66.6
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1141.7 822 66.2
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1141.7 825 65.9
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1140.2 844 65.3
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1139.8 839 64.5
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 831 66.5
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1138.6 872 64.1
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1138.3 837 65.2
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1137.9 834 65.5
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1135.2 968 59.0
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1132.9 833 66.0
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1132.1 840 64.4
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1128.6 833 65.4
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1119.8 827 64.9
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1114.8 828 65.8
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1109.7 782 68.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1107.8 850 63.4
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1101.7 831 64.0
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1076.2 852 62.7
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 5.6e-312 1073.9 832 62.4
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 1.5e-307 1059.3 840 62.6
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 2.0e-307 1058.9 941 57.0
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 3.4e-307 1058.1 859 61.4
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 1.7e-306 1055.8 835 61.1
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 4.3e-302 1041.2 832 60.6
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.2e-296 1023.1 791 63.1
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 1.7e-290 1002.7 758 63.5
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 1.4e-289 999.6 842 58.1
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 1.3e-282 976.5 828 57.4
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.2e-275 953.4 836 57.7
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.5e-270 935.6 667 67.6
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.2e-267 926.8 648 69.9
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 9.7e-254 880.6 834 54.2
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.7e-237 826.6 889 47.0
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 7.7e-235 817.8 568 68.0
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 4.2e-233 812.0 838 49.9
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 3.0e-231 805.8 856 47.5
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.2e-206 724.2 819 48.1
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 2.4e-175 620.2 366 84.2
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 4.5e-166 589.3 465 63.2
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.2e-157 560.5 398 66.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.0e-142 510.8 402 62.2
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.4e-124 451.4 361 60.1
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.3e-112 411.8 266 73.3
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 3.1e-111 407.1 556 46.2
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 2.9e-109 400.6 871 33.5
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.6e-94 351.7 739 34.6
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.7e-93 348.2 1131 26.3
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.4e-90 338.6 227 70.5
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.0e-89 334.7 498 40.0
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.6e-86 325.1 294 51.7
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 2.0e-86 324.7 567 40.0
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 2.0e-86 324.7 567 40.0
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.3e-84 317.4 269 59.1
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.3e-84 317.0 765 31.4
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 6.2e-83 313.2 301 58.5
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 5.8e-81 306.6 194 79.9
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 1.4e-79 302.0 195 73.8
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.4e-79 302.0 197 70.6
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.3e-77 294.7 204 69.1
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.6e-75 287.3 240 62.1
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.1e-44 186.0 151 59.6
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.1e-39 169.5 127 65.4
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.4e-39 169.1 94 84.0
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 7.4e-36 156.8 121 68.6
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.0e-33 148.7 78 88.5
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.9e-32 144.1 106 59.4
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 3.0e-29 134.8 72 84.7
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.3e-27 129.4 79 72.2
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.8e-27 127.5 70 82.9
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.8e-26 125.6 69 85.5
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 4.1e-26 124.4 98 64.3
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.6e-25 121.7 194 41.2
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.1e-23 116.3 104 63.5
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 3.6e-22 111.3 97 52.6
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 1.0e-21 109.8 193 38.9
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.3e-21 108.6 211 34.6
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 5.9e-17 94.0 56 66.1
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.4e-15 86.7 54 72.2
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.1e-14 85.5 65 61.5
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.2e-11 75.5 59 50.8
Eucgr.F02332 Eucalyptus grandis HOM05D002332 ORTHO05D002509 1.0e-08 66.6 330 25.2
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 2.9e-08 65.1 81 46.9
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 3.8e-08 64.7 331 20.2
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 3.8e-08 64.7 331 20.2
Cpa.g.sc65.26 Carica papaya HOM05D002332 ORTHO05D002509 4.2e-07 61.2 277 24.9
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 4.2e-07 61.2 237 25.3
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 4.2e-07 61.2 237 25.3
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 7.2e-07 60.5 141 28.4
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 1.2e-06 59.7 158 29.7
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 2.1e-06 58.9 218 27.1
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 2.7e-06 58.5 350 20.3
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 2.7e-06 58.5 157 26.8
TWI36G1206 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 2.7e-06 58.5 240 25.4
BcaB01g00739 Brassica carinata HOM05D002332 ORTHO05D002509 3.6e-06 58.2 151 26.5
BcaC07g39390 Brassica carinata HOM05D002332 ORTHO05D002509 4.7e-06 57.8 151 27.2
C08p24150 Brassica napus HOM05D002332 ORTHO05D002509 4.7e-06 57.8 151 27.2
BolC8t50036H Brassica oleracea HOM05D002332 ORTHO05D002509 4.7e-06 57.8 151 27.2
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 6.1e-06 57.4 173 26.0
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 6.1e-06 57.4 31 87.1


User provided reference genes

Program Settings