Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 4.2e-40 167.5 82 100.0
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 4.2e-40 167.5 82 100.0
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 1.2e-39 166.0 82 98.8
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 7.8e-39 163.3 82 97.6
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 7.8e-39 163.3 82 97.6
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 1.5e-37 159.1 83 96.4
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 2.4e-35 151.8 83 90.4
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 2.6e-34 148.3 83 88.0
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 2.6e-34 148.3 83 88.0
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 2.6e-34 148.3 83 88.0
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 3.4e-34 147.9 83 88.0
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 3.4e-34 147.9 83 88.0
AL1G56180 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 7.6e-34 146.7 80 83.8
Sp1g36190 Schrenkiella parvula HOM05D009461 ORTHO05D002252 9.9e-34 146.4 83 89.2
AL1G56260 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 1.7e-33 145.6 80 83.8
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 2.4e-32 141.7 83 86.7
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 2.4e-32 141.7 83 86.7
AT1G49310 Arabidopsis thaliana HOM05D009461 ORTHO05D002252 9.3e-32 139.8 79 81.0
C05p34800 Brassica napus HOM05D009461 ORTHO05D002252 1.2e-31 139.4 83 85.5
CARHR039300 Cardamine hirsuta HOM05D009461 ORTHO05D002252 2.7e-31 138.3 79 83.5
BcaB04g17352 Brassica carinata HOM05D009461 ORTHO05D002252 5.1e-30 134.0 83 80.7
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 6.6e-30 133.7 82 80.5
A08p04090 Brassica napus HOM05D009461 ORTHO05D002252 2.8e-28 128.3 83 77.1
BraA08t32434Z Brassica rapa HOM05D009461 ORTHO05D002252 2.8e-28 128.3 83 77.1
C08p04280 Brassica napus HOM05D009461 ORTHO05D002252 1.1e-27 126.3 83 75.9
BolC8t47231H Brassica oleracea HOM05D009461 ORTHO05D002252 1.1e-27 126.3 83 75.9
BcaC07g37067 Brassica carinata HOM05D009461 ORTHO05D002252 1.4e-27 125.9 83 75.9
Carub.0001s3849 Capsella rubella HOM05D009461 ORTHO05D002252 1.2e-26 122.9 84 71.4
Aa31LG10G4650 Aethionema arabicum HOM05D009461 ORTHO05D002252 9.0e-19 96.7 55 72.7
THA.LOC104821866 Tarenaya hassleriana HOM05D009461 ORTHO05D002252 7.1e-16 87.0 82 54.9
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 7.6e-10 67.0 69 55.1
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.9e-08 62.4 74 44.6
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 2.5e-08 62.0 85 43.5
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.5e-08 62.0 74 44.6
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 2.5e-08 62.0 69 47.8
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 3.2e-08 61.6 73 46.6
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 4.2e-08 61.2 89 41.6
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 5.5e-08 60.8 69 47.8
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 5.5e-08 60.8 82 46.3
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 7.1e-08 60.5 74 43.2
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 7.1e-08 60.5 79 43.0
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 7.1e-08 60.5 67 44.8
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.1e-07 58.9 81 40.7
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 2.1e-07 58.9 74 44.6
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 3.5e-07 58.2 69 40.6
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 3.5e-07 58.2 79 43.0
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 3.5e-07 58.2 70 45.7
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 3.5e-07 58.2 69 46.4
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 4.6e-07 57.8 73 43.8
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 4.6e-07 57.8 70 42.9
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 4.6e-07 57.8 69 47.8
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 6.1e-07 57.4 80 38.8
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 7.9e-07 57.0 77 40.3
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 7.9e-07 57.0 71 40.8
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.0e-06 56.6 78 42.3
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.0e-06 56.6 73 43.8
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 1.3e-06 56.2 69 42.0
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 1.3e-06 56.2 71 42.3
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 1.8e-06 55.8 82 37.8
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 2.3e-06 55.5 71 42.3
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.3e-06 55.5 80 42.5
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 2.3e-06 55.5 80 42.5
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 3.0e-06 55.1 71 39.4
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 3.9e-06 54.7 78 39.7
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 3.9e-06 54.7 72 47.2
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 5.1e-06 54.3 75 37.3
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 5.1e-06 54.3 78 35.9
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 6.7e-06 53.9 72 45.8
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 6.7e-06 53.9 71 43.7
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.7e-06 53.9 81 40.7
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 8.7e-06 53.5 77 42.9


User provided reference genes

Program Settings