Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p03810 Brassica napus HOM05D000055 ORTHO05D018778 8.7e-51 203.4 104 100.0
C02p35660 Brassica napus HOM05D000552 ORTHO05D018778 3.3e-34 148.3 107 78.5
BcaC01g05589 Brassica carinata HOM05D000055 ORTHO05D001675 3.7e-25 118.2 62 96.8
A03p20890 Brassica napus HOM05D000055 ORTHO05D001675 3.7e-25 118.2 62 96.8
BolC3t14852H Brassica oleracea HOM05D000055 ORTHO05D001675 3.7e-25 118.2 62 96.8
BraA03t11329Z Brassica rapa HOM05D000055 ORTHO05D001675 3.7e-25 118.2 62 96.8
C03p24540 Brassica napus HOM05D000055 ORTHO05D001675 6.2e-25 117.5 62 95.2
BcaB01g03749 Brassica carinata HOM05D000055 ORTHO05D001675 5.3e-24 114.4 62 91.9
Carub.0004s1976 Capsella rubella HOM05D000055 ORTHO05D001675 1.1e-21 106.7 62 87.1
AT2G37840 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 4.2e-21 104.8 62 85.5
AL4G34790 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 1.2e-20 103.2 62 82.3
Sabra16G0104000 Salix brachista HOM05D000055 ORTHO05D001675 4.3e-18 94.7 72 68.1
Aa31sc88G40 Aethionema arabicum HOM05D000055 ORTHO05D001675 9.7e-18 93.6 62 79.0
Potri.016G104900 Populus trichocarpa HOM05D000055 ORTHO05D001675 3.7e-17 91.7 65 70.8
Atru.chr8.2076 Acer truncatum HOM05D000055 ORTHO05D001675 2.4e-16 89.0 96 55.2
THA.LOC104823411 Tarenaya hassleriana HOM05D000055 ORTHO05D001675 2.4e-16 89.0 62 74.2
CARHR132400 Cardamine hirsuta HOM05D000055 ORTHO05D018778 3.1e-16 88.6 57 80.7
QL07p028568 Quercus lobata HOM05D000055 ORTHO05D001675 5.3e-16 87.8 64 70.3
Rhsim05G0196900 Rhododendron simsii HOM05D000055 ORTHO05D001675 6.9e-16 87.4 96 53.1
Lalb_Chr12g0209491 Lupinus albus HOM05D000055 ORTHO05D001675 9.0e-16 87.0 64 71.9
AL5G34910 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 1.2e-15 86.7 62 72.6
Manes.09G096800 Manihot esculenta HOM05D000055 ORTHO05D001675 1.2e-15 86.7 65 67.7
TWI77G0832 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 1.2e-15 86.7 96 53.1
Ciclev10011177m.g Citrus clementina HOM05D000055 ORTHO05D001675 1.5e-15 86.3 67 68.7
Glyma.01G099600 Glycine max HOM05D000055 ORTHO05D001675 1.5e-15 86.3 64 70.3
Glyma.03G069800 Glycine max HOM05D000055 ORTHO05D001675 1.5e-15 86.3 64 70.3
AT3G53930 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 2.0e-15 85.9 62 72.6
Thhalv10010160m.g Eutrema salsugineum HOM05D000055 ORTHO05D001675 2.0e-15 85.9 59 72.9
Lj3g0009590 Lotus japonicus HOM05D000055 ORTHO05D001675 2.0e-15 85.9 67 65.7
Sed0006565 Sechium edule HOM05D000055 ORTHO05D001675 2.0e-15 85.9 68 64.7
Actinidia13825 Actinidia chinensis HOM05D000055 ORTHO05D001675 3.4e-15 85.1 96 52.1
arahy.Tifrunner.gnm1.ann1.PY9A0S Arachis hypogaea HOM05D000055 ORTHO05D001675 3.4e-15 85.1 58 72.4
Carub.0005s2050 Capsella rubella HOM05D000055 ORTHO05D001675 3.4e-15 85.1 62 71.0
Cfa017311 Carpinus fangiana HOM05D000055 ORTHO05D001675 3.4e-15 85.1 93 53.8
CiPaw.09G199700 Carya illinoinensis HOM05D000055 ORTHO05D001675 3.4e-15 85.1 64 70.3
Phvul.010G015100 Phaseolus vulgaris HOM05D000055 ORTHO05D001675 3.4e-15 85.1 64 68.8
Sed0012814 Sechium edule HOM05D000055 ORTHO05D001675 3.4e-15 85.1 68 64.7
VMungo0331G1445 Vigna mungo HOM05D000055 ORTHO05D001675 3.4e-15 85.1 64 68.8
CARHR163820 Cardamine hirsuta HOM05D000055 ORTHO05D001675 4.5e-15 84.7 62 71.0
MBI14_g09001_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D001675 4.5e-15 84.7 67 64.2
PGR004G0083 Punica granatum HOM05D000055 ORTHO05D001675 4.5e-15 84.7 62 71.0
PGR107G0004 Punica granatum HOM05D000055 ORTHO05D001675 4.5e-15 84.7 62 71.0
TWI53G0243 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 4.5e-15 84.7 61 70.5
BraA04t18373Z Brassica rapa HOM05D000055 ORTHO05D018778 5.9e-15 84.3 50 84.0
Ca_20657_v3 Cicer arietinum L. HOM05D000055 ORTHO05D001675 5.9e-15 84.3 64 68.8
CsaV3_3G034550 Cucumis sativus L. HOM05D000055 ORTHO05D001675 5.9e-15 84.3 68 66.2
DCAR_028772 Daucus carota HOM05D000055 ORTHO05D001675 5.9e-15 84.3 61 65.6
Dinv35551 Davidia involucrata HOM05D000055 ORTHO05D001675 5.9e-15 84.3 96 52.1
Medtr4g019410 Medicago truncatula HOM05D000055 ORTHO05D001675 5.9e-15 84.3 64 68.8
GSVIVG01034089001 Vitis vinifera HOM05D000055 ORTHO05D001675 5.9e-15 84.3 61 70.5
Thecc.05G031200 Theobroma cacao HOM05D000055 ORTHO05D001675 7.7e-15 84.0 58 72.4
TPR.G39787 Trifolium pratense HOM05D000055 ORTHO05D018778 7.7e-15 84.0 58 72.4
vmacro20188 Vaccinium macrocarpon HOM05D000055 ORTHO05D001675 7.7e-15 84.0 96 51.0
Nn2g13503 Nelumbo nucifera HOM05D000055 ORTHO05D001675 1.0e-14 83.6 64 65.6
HanXRQChr04g0124561 Helianthus annuus HOM05D000055 ORTHO05D001675 1.3e-14 83.2 61 67.2
Cpa.g.sc56.42 Carica papaya HOM05D000055 ORTHO05D001675 1.7e-14 82.8 62 67.7
ClCG10G021490 Citrullus lanatus HOM05D000055 ORTHO05D001675 1.7e-14 82.8 68 64.7
Lalb_Chr07g0193101 Lupinus albus HOM05D000055 ORTHO05D001675 1.7e-14 82.8 64 67.2
Sabra06G0070600 Salix brachista HOM05D000055 ORTHO05D001675 1.7e-14 82.8 62 64.5
TAR369G0359 Trochodendron aralioides HOM05D000055 ORTHO05D001675 1.7e-14 82.8 59 72.9
arahy.Tifrunner.gnm1.ann1.QJW061 Arachis hypogaea HOM05D000055 ORTHO05D001675 2.2e-14 82.4 58 70.7
A04p28980 Brassica napus HOM05D000055 ORTHO05D018778 2.2e-14 82.4 51 80.4
CANSAT35G1498 Cannabis sativa HOM05D000055 ORTHO05D001675 2.2e-14 82.4 58 70.7
COL.COLO4_14715 Corchorus olitorius HOM05D000055 ORTHO05D001675 2.2e-14 82.4 58 72.4
Nn2g11263 Nelumbo nucifera HOM05D000055 ORTHO05D001675 2.2e-14 82.4 62 66.1
Aqoxy1G00820 Aquilegia oxysepala HOM05D000055 ORTHO05D001675 2.9e-14 82.0 98 49.0
Dinv37130 Davidia involucrata HOM05D000055 ORTHO05D001675 2.9e-14 82.0 61 68.9
MBI14_g09004_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D001675 2.9e-14 82.0 59 67.8
Gohir.D13G095000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 3.8e-14 81.6 58 70.7
Gorai.001G247200 Gossypium raimondii HOM05D000055 ORTHO05D001675 3.8e-14 81.6 58 70.7
TAR623G1189 Trochodendron aralioides HOM05D000055 ORTHO05D001675 3.8e-14 81.6 58 70.7
HanXRQChr06g0177391 Helianthus annuus HOM05D000055 ORTHO05D001675 5.0e-14 81.3 67 62.7
Lj2A87G48 Lonicera japonica HOM05D000055 ORTHO05D001675 5.0e-14 81.3 61 65.6
MD12G1151100 Malus domestica HOM05D000055 ORTHO05D001675 5.0e-14 81.3 58 70.7
Sopen10g034390 Solanum pennellii HOM05D000055 ORTHO05D001675 5.0e-14 81.3 93 51.6
ATR0559G304 Amborella trichopoda HOM05D000055 ORTHO05D001675 6.5e-14 80.9 62 67.7
Haze_20869 Corylus avellana HOM05D000055 ORTHO05D001675 6.5e-14 80.9 64 67.2
Gorai.012G108100 Gossypium raimondii HOM05D000055 ORTHO05D001675 6.5e-14 80.9 58 70.7
Lsat_1_v5_gn_8_84601 Lactuca sativa HOM05D000055 ORTHO05D001675 6.5e-14 80.9 73 60.3
Solyc10g084930.2 Solanum lycopersicum HOM05D000055 ORTHO05D001675 6.5e-14 80.9 93 51.6
EL10Ac5g11559 Beta vulgaris HOM05D000055 ORTHO05D001675 8.5e-14 80.5 58 67.2
ECA236G0327 Erigeron canadensis HOM05D000055 ORTHO05D001675 8.5e-14 80.5 61 67.2
Potri.006G092900 Populus trichocarpa HOM05D000055 ORTHO05D001675 8.5e-14 80.5 61 67.2
Sp5g08470 Schrenkiella parvula HOM05D000055 ORTHO05D001675 8.5e-14 80.5 59 69.5
Sc01g0004700 Simmondsia chinensis HOM05D000055 ORTHO05D001675 8.5e-14 80.5 58 67.2
Duzib128G0746 Durio zibethinus HOM05D000055 ORTHO05D001675 1.1e-13 80.1 64 67.2
Gohir.D04G125000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.1e-13 80.1 58 70.7
PGSC0003DMG400011011 Solanum tuberosum HOM05D000055 ORTHO05D001675 1.1e-13 80.1 93 51.6
CSS0042370 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D001675 1.4e-13 79.7 89 52.8
Gohir.A04G085400 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.4e-13 79.7 58 70.7
MD04G1136900 Malus domestica HOM05D000055 ORTHO05D001675 1.9e-13 79.3 64 65.6
Peaxi162Scf00318g00323 Petunia axillaris HOM05D000055 ORTHO05D001675 1.9e-13 79.3 93 49.5
SalBow4G0517 Salvia bowleyana HOM05D000055 ORTHO05D001675 1.9e-13 79.3 93 50.5
BcaB02g08501 Brassica carinata HOM05D000055 ORTHO05D001675 2.5e-13 79.0 59 69.5
A04p05830 Brassica napus HOM05D000055 ORTHO05D001675 2.5e-13 79.0 59 69.5
BraA04t16280Z Brassica rapa HOM05D000055 ORTHO05D001675 2.5e-13 79.0 59 69.5
FvH4_6g12940 Fragaria vesca HOM05D000055 ORTHO05D001675 2.5e-13 79.0 64 65.6
FAN05G3613 Fragaria x ananassa HOM05D000055 ORTHO05D001675 2.5e-13 79.0 64 65.6
FAN09G1756 Fragaria x ananassa HOM05D000055 ORTHO05D001675 2.5e-13 79.0 64 65.6
FAN14G4822 Fragaria x ananassa HOM05D000055 ORTHO05D001675 2.5e-13 79.0 64 65.6
Nitab4.5_0006535g0020 Nicotiana tabacum HOM05D000038 ORTHO05D001675 2.5e-13 79.0 93 50.5
PSO513G0088 Papaver somniferum HOM05D000055 ORTHO05D001675 2.5e-13 79.0 58 67.2
RcHm_v2.0_Chr3g0465041 Rosa chinensis HOM05D000055 ORTHO05D001675 2.5e-13 79.0 64 65.6
Ah.02g115410 Amaranthus hybridus HOM05D000055 ORTHO05D001675 3.2e-13 78.6 58 67.2
Solyc09g011320.3 Solanum lycopersicum HOM05D000055 ORTHO05D001675 3.2e-13 78.6 93 50.5
C04p66230 Brassica napus HOM05D000055 ORTHO05D018778 4.2e-13 78.2 51 80.4
Nitab4.5_0002170g0030 Nicotiana tabacum HOM05D000055 ORTHO05D001675 4.2e-13 78.2 93 49.5
Oeu001845.1 Olea europaea HOM05D000055 ORTHO05D001675 5.5e-13 77.8 93 49.5
PSO339G0089 Papaver somniferum HOM05D000055 ORTHO05D001675 5.5e-13 77.8 58 65.5
Prupe.6G262900 Prunus persica HOM05D000055 ORTHO05D001675 5.5e-13 77.8 64 65.6
Rhsim04G0162700 Rhododendron simsii HOM05D000055 ORTHO05D001675 5.5e-13 77.8 93 51.6
Nitab4.5_0000828g0030 Nicotiana tabacum HOM05D000055 ORTHO05D001675 7.2e-13 77.4 93 49.5
PGSC0003DMG400008887 Solanum tuberosum HOM05D000055 ORTHO05D001675 7.2e-13 77.4 93 49.5
Migut.J00278 Erythranthe guttata HOM05D000055 ORTHO05D001675 9.4e-13 77.0 93 48.4
Migut.L01969 Erythranthe guttata HOM05D000055 ORTHO05D001675 9.4e-13 77.0 93 50.5
Sopen09g006040 Solanum pennellii HOM05D000055 ORTHO05D001675 9.4e-13 77.0 93 49.5
BcaC02g09123 Brassica carinata HOM05D000055 ORTHO05D001675 1.2e-12 76.6 59 67.8
C04p38670 Brassica napus HOM05D000055 ORTHO05D001675 1.2e-12 76.6 59 67.8
BolC4t25445H Brassica oleracea HOM05D000055 ORTHO05D001675 1.2e-12 76.6 59 67.8
Nitab4.5_0000362g0050 Nicotiana tabacum HOM05D000055 ORTHO05D001675 1.2e-12 76.6 93 49.5
FAN02G1079 Fragaria x ananassa HOM05D000055 ORTHO05D001675 2.1e-12 75.9 64 64.1
SGA_v2.0_scaffold75G24971 Striga asiatica HOM05D000055 ORTHO05D001675 2.1e-12 75.9 93 49.5
BolC4t28127H Brassica oleracea HOM05D000055 ORTHO05D018778 2.7e-12 75.5 44 81.8
CAN.G229.32 Capsicum annuum HOM05D000055 ORTHO05D001675 6.1e-12 74.3 93 48.4
Peaxi162Scf00094g00112 Petunia axillaris HOM05D000055 ORTHO05D001675 7.9e-12 73.9 58 65.5
Eucgr.K03054 Eucalyptus grandis HOM05D000055 ORTHO05D001675 1.4e-11 73.2 60 61.7
Cc06_g02180 Coffea canephora HOM05D000055 ORTHO05D001675 1.8e-11 72.8 58 69.0
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 1.8e-11 72.8 44 81.8
PSO339G1793 Papaver somniferum HOM05D000055 ORTHO05D001675 2.3e-11 72.4 58 65.5
Oeu053775.1 Olea europaea HOM05D000055 ORTHO05D001675 3.0e-11 72.0 88 50.0
CDE03G0126 Ceratophyllum demersum HOM05D000055 ORTHO05D001675 3.9e-11 71.6 62 58.1
CDE04G2119 Ceratophyllum demersum HOM05D000055 ORTHO05D001675 3.9e-11 71.6 62 58.1
PSO384G0871 Papaver somniferum HOM05D000055 ORTHO05D001675 5.1e-11 71.2 58 63.8
vmacro08632 Vaccinium macrocarpon HOM05D000055 ORTHO05D001675 5.1e-11 71.2 61 59.0
MSTRG.19060 Avicennia marina HOM05D000055 ORTHO05D001675 6.7e-11 70.9 93 46.2
unitig_578.g15882 Utricularia gibba HOM05D000055 ORTHO05D001675 6.7e-11 70.9 76 53.9
unitig_8.g4425 Utricularia gibba HOM05D000055 ORTHO05D001675 6.7e-11 70.9 88 50.0
HPP92_019229 Vanilla planifolia HOM05D000055 ORTHO05D001675 1.1e-10 70.1 62 59.7
SGA_v2.0_scaffold85G26825 Striga asiatica HOM05D000229 ORTHO05D001675 2.5e-10 68.9 93 46.2
CAN.G502.28 Capsicum annuum HOM05D000055 ORTHO05D001675 1.3e-09 66.6 93 44.1
DCAR_012134 Daucus carota HOM05D000055 ORTHO05D001675 1.3e-09 66.6 61 55.7
Oeu013147.1 Olea europaea HOM05D000055 ORTHO05D001675 1.3e-09 66.6 65 53.8
BolC2t09586H Brassica oleracea HOM05D000552 ORTHO05D000469 2.8e-09 65.5 51 72.5
Oeu030559.1 Olea europaea HOM05D000055 ORTHO05D001675 3.7e-09 65.1 64 53.1
SMO239G0045 Selaginella moellendorffii HOM05D000055 ORTHO05D001675 8.2e-09 63.9 64 50.0
SMO307G0079 Selaginella moellendorffii HOM05D000055 ORTHO05D001675 1.1e-08 63.5 64 50.0
Zm00001eb012000 Zea mays HOM05D000055 ORTHO05D001675 1.8e-08 62.8 59 52.5
Os03g0268200 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D001675 1.5e-07 59.7 59 55.9
CBR_g36590 Chara braunii HOM05D000055 ORTHO05D001675 2.0e-07 59.3 62 50.0
SEGI_24002 Sequoiadendron giganteum HOM05D000055 ORTHO05D001675 1.0e-06 57.0 54 50.0
Aa31LG10G15950 Aethionema arabicum HOM05D000055 ORTHO05D001675 2.9e-06 55.5 62 46.8
Pp3c18_19590 Physcomitrium patens HOM05D000055 ORTHO05D001675 3.8e-06 55.1 53 49.1
Pp3c21_2050 Physcomitrium patens HOM05D000055 ORTHO05D001675 6.5e-06 54.3 53 49.1


User provided reference genes

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