Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p03680 Brassica napus HOM05D002115 ORTHO05D002263 1.7e-85 319.3 161 100.0
BolC6t35507H Brassica oleracea HOM05D002115 ORTHO05D002263 3.5e-83 311.6 161 97.5
BcaC08g43099 Brassica carinata HOM05D002115 ORTHO05D002263 1.1e-41 173.7 79 100.0
BcaNung05018 Brassica carinata HOM05D002115 ORTHO05D002263 1.1e-41 173.7 79 100.0
AL1G55780 Arabidopsis lyrata HOM05D002115 ORTHO05D002263 1.2e-30 137.1 84 72.6
Carub.0001s3812 Capsella rubella HOM05D002115 ORTHO05D002263 1.2e-30 137.1 82 74.4
AT1G48950 Arabidopsis thaliana HOM05D002115 ORTHO05D002263 1.0e-29 134.0 87 70.1
Thhalv10011335m.g Eutrema salsugineum HOM05D002115 ORTHO05D002263 1.3e-29 133.7 82 73.2
Sp1g35860 Schrenkiella parvula HOM05D002115 ORTHO05D002263 1.7e-29 133.3 83 72.3
A08p04290 Brassica napus HOM05D002115 ORTHO05D002263 3.8e-29 132.1 83 71.1
BcaB04g17377 Brassica carinata HOM05D002115 ORTHO05D002263 5.0e-29 131.7 83 71.1
BraA08t32456Z Brassica rapa HOM05D002115 ORTHO05D002263 8.5e-29 131.0 86 67.4
C08p04560 Brassica napus HOM05D002115 ORTHO05D002263 1.1e-28 130.6 83 69.9
BolC8t47260H Brassica oleracea HOM05D002115 ORTHO05D002263 1.1e-28 130.6 86 67.4
BcaC07g37092 Brassica carinata HOM05D002115 ORTHO05D002263 2.5e-28 129.4 83 69.9
CARHR038960 Cardamine hirsuta HOM05D002115 ORTHO05D002263 4.2e-28 128.6 82 67.1
THA.LOC104820411 Tarenaya hassleriana HOM05D002115 ORTHO05D002263 8.5e-21 104.4 82 57.3
CANSAT80G1296 Cannabis sativa HOM05D002115 ORTHO05D002263 4.4e-17 92.0 82 57.3
QL10p023276 Quercus lobata HOM05D002115 ORTHO05D002263 9.7e-17 90.9 70 60.0
Lsat_1_v5_gn_4_112060 Lactuca sativa HOM05D002115 ORTHO05D002263 3.7e-16 89.0 85 49.4
Migut.I00399 Erythranthe guttata HOM05D002115 ORTHO05D002263 4.8e-16 88.6 107 44.9
CiPaw.15G125000 Carya illinoinensis HOM05D002115 ORTHO05D002263 6.3e-16 88.2 87 48.3
Cpa.g.sc13.69 Carica papaya HOM05D002115 ORTHO05D002263 1.1e-15 87.4 67 59.7
Haze_18585 Corylus avellana HOM05D002115 ORTHO05D002263 1.4e-15 87.0 97 48.5
MD06G1209700 Malus domestica HOM05D002115 ORTHO05D002263 4.1e-15 85.5 61 60.7
MD14G1220400 Malus domestica HOM05D002115 ORTHO05D002263 5.3e-15 85.1 62 59.7
RcHm_v2.0_Chr7g0184391 Rosa chinensis HOM05D002115 ORTHO05D002263 6.9e-15 84.7 61 63.9
vmacro17687 Vaccinium macrocarpon HOM05D002115 ORTHO05D002263 9.1e-15 84.3 86 48.8
Cfa019839 Carpinus fangiana HOM05D002115 ORTHO05D002263 1.2e-14 84.0 80 52.5
Aqoxy3G03873 Aquilegia oxysepala HOM05D002115 ORTHO05D002263 1.5e-14 83.6 84 48.8
FAN08G0485 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.5e-14 83.6 83 54.2
Atru.chr9.725 Acer truncatum HOM05D002115 ORTHO05D002263 2.0e-14 83.2 72 54.2
Lalb_Chr13g0302441 Lupinus albus HOM05D002115 ORTHO05D002263 2.0e-14 83.2 120 41.7
PGR044G1254 Punica granatum HOM05D002115 ORTHO05D002263 2.0e-14 83.2 68 61.8
GSVIVG01022738001 Vitis vinifera HOM05D002115 ORTHO05D002263 2.0e-14 83.2 90 46.7
Prupe.5G215700 Prunus persica HOM05D002115 ORTHO05D002263 2.6e-14 82.8 61 59.0
Rhsim08G0138600 Rhododendron simsii HOM05D002115 ORTHO05D002263 3.4e-14 82.4 113 40.7
GSVIVG01008221001 Vitis vinifera HOM05D002115 ORTHO05D002263 3.4e-14 82.4 76 53.9
AUR62032177 Chenopodium quinoa HOM05D002115 ORTHO05D002263 4.5e-14 82.0 69 56.5
FvH4_5g12830 Fragaria vesca HOM05D002115 ORTHO05D002263 4.5e-14 82.0 61 62.3
FAN18G1117 Fragaria x ananassa HOM05D002115 ORTHO05D002263 4.5e-14 82.0 61 62.3
FAN18G4052 Fragaria x ananassa HOM05D002115 ORTHO05D002263 4.5e-14 82.0 61 62.3
FAN13G0771 Fragaria x ananassa HOM05D002115 ORTHO05D002263 7.7e-14 81.3 74 56.8
PGSC0003DMG400005617 Solanum tuberosum HOM05D002115 ORTHO05D002263 7.7e-14 81.3 78 52.6
Sopen03g038730 Solanum pennellii HOM05D002115 ORTHO05D002263 1.0e-13 80.9 78 51.3
Ciclev10019188m.g Citrus clementina HOM05D002115 ORTHO05D002263 1.3e-13 80.5 71 57.7
TAR622G1398 Trochodendron aralioides HOM05D002115 ORTHO05D002263 1.3e-13 80.5 70 51.4
AUR62036937 Chenopodium quinoa HOM05D002115 ORTHO05D002263 1.7e-13 80.1 69 55.1
CsaV3_1G006430 Cucumis sativus L. HOM05D002115 ORTHO05D002263 1.7e-13 80.1 69 56.5
Potri.015G052400 Populus trichocarpa HOM05D002115 ORTHO05D002263 1.7e-13 80.1 94 51.1
Sabra15G0077500 Salix brachista HOM05D002115 ORTHO05D002263 1.7e-13 80.1 93 49.5
Sc12g0006820 Simmondsia chinensis HOM05D002115 ORTHO05D002263 1.7e-13 80.1 82 46.3
CSS0028652 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 2.2e-13 79.7 89 47.2
Sed0001077 Sechium edule HOM05D002115 ORTHO05D002263 2.2e-13 79.7 66 59.1
SGA_v2.0_scaffold25G10978 Striga asiatica HOM05D002115 ORTHO05D002263 2.2e-13 79.7 65 56.9
Cc04_g07660 Coffea canephora HOM05D002115 ORTHO05D002263 2.9e-13 79.3 65 53.8
DCAR_011336 Daucus carota HOM05D002115 ORTHO05D002263 2.9e-13 79.3 76 53.9
ECA232G2843 Erigeron canadensis HOM05D002115 ORTHO05D002263 2.9e-13 79.3 83 45.8
TWI60G1253 Tripterygium wilfordii HOM05D002115 ORTHO05D002263 2.9e-13 79.3 82 47.6
TPR.G26765 Trifolium pratense HOM05D002115 ORTHO05D002263 5.0e-13 78.6 68 58.8
CAN.G438.104 Capsicum annuum HOM05D002115 ORTHO05D002263 6.5e-13 78.2 85 49.4
Medtr4g111710 Medicago truncatula HOM05D002115 ORTHO05D002263 8.5e-13 77.8 66 57.6
Duzib068G0172 Durio zibethinus HOM05D002115 ORTHO05D002263 1.1e-12 77.4 81 53.1
Solyc03g119870.3 Solanum lycopersicum HOM05D002115 ORTHO05D002263 1.1e-12 77.4 78 50.0
VMungo1215G1940 Vigna mungo HOM05D002115 ORTHO05D002263 1.1e-12 77.4 70 54.3
Ah.02g114460 Amaranthus hybridus HOM05D002115 ORTHO05D002263 1.4e-12 77.0 83 45.8
HanXRQChr09g0269821 Helianthus annuus HOM05D002115 ORTHO05D002263 1.4e-12 77.0 77 44.2
MELO3C002069.2 Cucumis melo HOM05D002115 ORTHO05D002263 1.9e-12 76.6 66 56.1
Nitab4.5_0003716g0010 Nicotiana tabacum HOM05D002115 ORTHO05D002263 1.9e-12 76.6 71 52.1
Dinv38599 Davidia involucrata HOM05D002115 ORTHO05D002263 2.5e-12 76.3 87 44.8
Glyma.05G014400 Glycine max HOM05D002115 ORTHO05D002263 2.5e-12 76.3 68 55.9
Ca_02528_v3 Cicer arietinum L. HOM05D002115 ORTHO05D002263 3.2e-12 75.9 72 52.8
Psat4g046640 Pisum sativum HOM05D002115 ORTHO05D002263 3.2e-12 75.9 68 58.8
Hund02529 Selenicereus undatus HOM05D002115 ORTHO05D002263 3.2e-12 75.9 83 39.8
MSTRG.11317 Avicennia marina HOM05D002115 ORTHO05D002263 5.5e-12 75.1 79 45.6
Phvul.003G178600 Phaseolus vulgaris HOM05D002115 ORTHO05D002263 9.4e-12 74.3 68 55.9
Lj4g0016114 Lotus japonicus HOM05D002115 ORTHO05D002263 1.2e-11 73.9 68 54.4
Potri.012G058550 Populus trichocarpa HOM05D002115 ORTHO05D002263 1.2e-11 73.9 71 53.5
Thecc.03G026600 Theobroma cacao HOM05D002115 ORTHO05D002263 1.2e-11 73.9 71 52.1
PSO782G0522 Papaver somniferum HOM05D002115 ORTHO05D002263 1.6e-11 73.6 76 44.7
Glyma.17G122700 Glycine max HOM05D002115 ORTHO05D002263 2.1e-11 73.2 70 52.9
Gohir.A07G040700 Gossypium hirsutum HOM05D002115 ORTHO05D002263 2.1e-11 73.2 71 52.1
PSO063G6529 Papaver somniferum HOM05D002115 ORTHO05D002263 2.1e-11 73.2 76 44.7
Lj5A141T88 Lonicera japonica HOM05D002115 ORTHO05D002263 2.7e-11 72.8 76 47.4
Eucgr.K02649 Eucalyptus grandis HOM05D002115 ORTHO05D002263 3.6e-11 72.4 64 56.2
ClCG04G011340 Citrullus lanatus HOM05D002115 ORTHO05D002263 4.7e-11 72.0 66 54.5
Nitab4.5_0000410g0200 Nicotiana tabacum HOM05D002115 ORTHO05D002263 6.1e-11 71.6 64 54.7
Gorai.001G047900 Gossypium raimondii HOM05D002115 ORTHO05D002263 8.0e-11 71.2 71 50.7
CDE06G0472 Ceratophyllum demersum HOM05D002115 ORTHO05D002263 1.4e-10 70.5 69 46.4
Nn3g17679 Nelumbo nucifera HOM05D002115 ORTHO05D002263 1.8e-10 70.1 52 59.6
TAR374G1284 Trochodendron aralioides HOM05D002115 ORTHO05D002263 3.9e-10 68.9 66 50.0
Oeu031805.1 Olea europaea HOM05D002115 ORTHO05D002263 6.7e-10 68.2 58 53.4
arahy.Tifrunner.gnm1.ann1.PSZ3R8 Arachis hypogaea HOM05D002115 ORTHO05D002263 8.8e-10 67.8 79 45.6
arahy.Tifrunner.gnm1.ann1.SC3UAH Arachis hypogaea HOM05D002115 ORTHO05D002263 8.8e-10 67.8 79 45.6
unitig_899.g15492 Utricularia gibba HOM05D002115 ORTHO05D002263 8.8e-10 67.8 60 53.3
EL10Ac5g11237 Beta vulgaris HOM05D002115 ORTHO05D002263 1.7e-08 63.5 71 45.1
Peaxi162Scf00015g00622 Petunia axillaris HOM05D002115 ORTHO05D002263 1.1e-07 60.8 42 59.5
HPP92_024704 Vanilla planifolia HOM05D002115 ORTHO05D002263 1.1e-07 60.8 72 48.6
Zm00001eb357790 Zea mays HOM05D002115 ORTHO05D002263 1.1e-07 60.8 103 38.8
ATR0559G005 Amborella trichopoda HOM05D002115 ORTHO05D002263 1.6e-06 57.0 107 33.6
AagrBONN_evm.TU.Sc2ySwM_344.1038 Anthoceros agrestis HOM05D002115 ORTHO05D002263 5.9e-06 55.1 95 33.7


User provided reference genes

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