Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 5.1e-232 807.4 403 100.0
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 5.1e-232 807.4 403 100.0
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 8.1e-230 800.0 403 99.3
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 3.7e-214 748.0 403 94.5
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 9.0e-213 743.4 404 91.8
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 1.1e-210 736.5 405 91.6
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 3.2e-210 734.9 398 93.5
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.2e-209 733.0 398 93.2
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.3e-206 723.0 405 89.6
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 1.4e-202 709.5 405 87.2
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 3.2e-202 708.4 404 87.6
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 1.1e-194 683.3 403 86.1
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 1.6e-193 679.5 375 89.1
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.7e-185 652.1 375 83.2
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 4.8e-182 641.3 384 81.0
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.2e-175 620.2 380 77.4
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 1.2e-175 620.2 403 73.9
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 4.5e-172 608.2 383 75.5
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 7.7e-172 607.4 372 77.7
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.3e-171 606.7 373 76.1
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 2.9e-171 605.5 402 73.6
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.9e-171 605.5 373 76.4
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 3.8e-171 605.1 373 77.5
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 1.1e-170 603.6 373 76.1
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.9e-170 602.8 403 73.0
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 5.5e-170 601.3 375 77.1
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 5.5e-170 601.3 380 75.0
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 7.2e-170 600.9 404 71.5
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.2e-169 600.1 373 75.6
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 2.7e-169 599.0 388 72.9
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.1e-169 597.8 379 74.4
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 2.3e-168 595.9 373 74.5
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.5e-167 593.2 373 75.1
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 9.8e-167 590.5 374 73.5
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 2.2e-166 589.3 374 73.8
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 3.7e-166 588.6 388 72.7
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 2.4e-165 585.9 386 72.5
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 4.1e-165 585.1 404 69.8
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 5.4e-165 584.7 390 72.6
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 5.4e-165 584.7 392 72.4
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 5.4e-165 584.7 373 73.5
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 1.6e-164 583.2 373 75.6
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 3.5e-164 582.0 384 71.9
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 3.5e-164 582.0 409 68.7
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 7.7e-164 580.9 380 72.6
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 1.3e-163 580.1 373 74.3
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 3.8e-163 578.6 397 69.0
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 5.0e-163 578.2 376 72.1
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 5.0e-163 578.2 372 72.0
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 1.1e-162 577.0 380 71.8
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 2.5e-162 575.9 396 68.9
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 2.5e-162 575.9 372 71.8
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 7.2e-162 574.3 372 73.1
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.2e-161 573.5 373 73.5
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 1.6e-161 573.2 372 71.8
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.6e-161 573.2 379 72.6
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 3.6e-161 572.0 372 71.5
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 6.1e-161 571.2 373 73.2
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 8.0e-161 570.9 373 72.4
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 5.2e-160 568.2 372 72.8
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 8.8e-160 567.4 380 72.1
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 2.0e-159 566.2 374 71.1
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 2.8e-158 562.4 375 71.5
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 2.4e-157 559.3 381 70.6
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 2.4e-157 559.3 432 63.0
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 5.4e-157 558.1 378 69.3
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 5.4e-157 558.1 373 73.2
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 9.2e-157 557.4 374 70.9
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 2.7e-156 555.8 372 71.0
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.5e-156 555.4 397 67.3
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 1.0e-155 553.9 372 71.5
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 3.3e-154 548.9 408 66.2
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.2e-153 547.0 378 69.8
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 6.1e-153 544.7 397 69.0
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 8.0e-153 544.3 373 70.5
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.4e-152 543.5 372 69.6
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 4.0e-152 542.0 455 60.9
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 5.2e-152 541.6 372 69.9
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 5.4e-149 531.6 351 72.6
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 3.5e-148 528.9 382 67.0
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 4.6e-148 528.5 372 68.3
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.0e-147 527.3 372 68.8
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.3e-147 526.2 372 69.4
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 5.0e-147 525.0 372 68.8
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.9e-146 523.1 372 68.0
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 2.5e-146 522.7 372 68.5
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 2.7e-140 502.7 401 62.8
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 2.3e-139 499.6 316 75.9
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 5.0e-139 498.4 376 64.1
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 9.5e-138 494.2 316 75.9
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 1.8e-136 490.0 333 72.1
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.2e-135 487.3 316 71.5
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.2e-135 487.3 377 61.8
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 4.4e-135 485.3 356 64.6
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 4.1e-133 478.8 369 62.6
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 5.4e-133 478.4 389 61.7
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 2.1e-129 466.5 401 59.4
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 1.8e-128 463.4 395 57.7
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 1.7e-126 456.8 381 59.8
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 3.8e-126 455.7 399 57.4
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.9e-125 453.4 373 60.6
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 5.4e-125 451.8 405 58.8
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.1e-124 449.9 368 58.4
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 3.5e-124 449.1 372 61.0
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.4e-120 437.2 274 76.6
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 4.9e-118 428.7 273 74.4
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 5.4e-117 425.2 288 70.5
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 2.3e-115 419.9 362 58.6
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 1.6e-113 413.7 378 55.6
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 1.2e-111 407.5 351 57.0
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 3.2e-109 399.4 322 64.3
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 2.7e-108 396.4 373 55.8
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.1e-106 391.0 404 50.0
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.1e-106 391.0 404 50.0
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 1.9e-101 373.6 624 38.3
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 1.9e-98 363.6 372 51.9
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 1.5e-90 337.4 232 70.7
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 2.2e-81 307.0 534 38.8
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 2.5e-77 293.5 190 73.2
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 1.3e-70 271.2 158 77.2
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 1.3e-70 271.2 158 77.2
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 1.8e-67 260.8 159 75.5
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 5.3e-64 249.2 163 74.2
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 9.1e-64 248.4 155 75.5
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 4.5e-63 246.1 215 58.6
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 8.5e-62 241.9 159 73.6
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.2e-61 240.0 180 63.9
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.5e-45 188.0 121 74.4
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.5e-45 188.0 121 74.4
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 5.5e-45 186.0 120 73.3
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.7e-41 174.5 322 37.6
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 4.4e-34 149.8 341 32.0
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.1e-28 131.0 203 44.3
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 6.4e-25 119.4 75 68.0
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 5.4e-24 116.3 94 54.3
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 1.2e-23 115.2 76 68.4
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 3.9e-22 110.2 181 38.7
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 2.1e-20 104.4 332 29.5
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 2.3e-19 100.9 69 69.6
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 6.4e-17 92.8 324 26.2
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 4.6e-15 86.7 319 24.5
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 1.0e-14 85.5 318 24.8
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 2.3e-14 84.3 336 24.7
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 3.9e-14 83.6 339 25.1
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 8.6e-14 82.4 47 83.0
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 1.5e-13 81.6 364 22.8
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.9e-13 81.3 360 23.3
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 4.3e-13 80.1 342 22.8
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 2.1e-12 77.8 355 23.1
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 4.7e-12 76.6 331 21.8
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 1.1e-11 75.5 348 22.7
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 1.1e-11 75.5 338 23.7
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 1.4e-11 75.1 45 80.0
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 1.4e-11 75.1 45 80.0
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 1.4e-11 75.1 45 80.0
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 1.8e-11 74.7 342 23.1
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 2.4e-11 74.3 343 23.6
PRCOL_00002385 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 2.4e-11 74.3 265 27.5
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 3.1e-11 73.9 197 30.5
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 4.0e-11 73.6 340 23.5
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 4.0e-11 73.6 46 67.4
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 1.5e-10 71.6 145 30.3
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.6e-10 70.9 340 22.6
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.6e-10 70.9 340 22.6
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 2.6e-10 70.9 337 22.3
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.8e-10 69.7 330 23.6
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 5.8e-10 69.7 345 22.0
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 1.3e-09 68.6 337 21.7
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.3e-09 68.6 330 23.6
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.3e-09 68.6 331 22.4
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 1.6e-07 61.6 73 43.8
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.5e-07 60.5 296 24.0
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 6.6e-06 56.2 179 32.4


User provided reference genes

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