Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 1.6e-92 342.8 179 100.0
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 9.5e-90 333.6 174 100.0
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 6.2e-89 330.9 172 100.0
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.1e-74 283.5 173 89.6
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 1.1e-69 266.9 137 100.0
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 1.1e-69 266.9 137 100.0
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 4.2e-69 265.0 137 99.3
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 1.6e-65 253.1 174 77.0
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 1.6e-65 253.1 174 77.0
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 3.1e-64 248.8 150 90.0
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 3.1e-64 248.8 150 90.0
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 5.3e-64 248.1 174 75.3
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 1.5e-63 246.5 174 77.6
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 4.5e-63 245.0 174 77.0
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 1.3e-62 243.4 173 76.3
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.2e-62 242.7 173 75.7
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 1.6e-60 236.5 173 74.6
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 2.4e-56 222.6 176 72.2
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 3.1e-56 222.2 167 73.1
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.8e-54 215.3 175 70.3
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 1.1e-53 213.8 174 67.8
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.9e-50 203.0 175 67.4
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 4.1e-40 168.7 184 56.5
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-39 167.2 185 55.7
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.2e-39 167.2 185 55.7
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.2e-39 167.2 185 55.7
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 2.0e-39 166.4 185 56.8
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.0e-39 166.4 183 54.1
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 2.9e-38 162.5 177 54.2
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 3.8e-38 162.2 191 55.5
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 6.5e-38 161.4 185 55.1
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 6.5e-38 161.4 185 54.1
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.9e-37 159.8 184 54.3
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 6.1e-36 154.8 184 52.2
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 3.0e-35 152.5 181 51.9
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.4e-19 100.5 188 35.1
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 2.3e-19 99.8 178 37.1
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 8.8e-19 97.8 188 36.2
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 5.7e-18 95.1 194 33.5
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 2.2e-17 93.2 192 35.4
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 2.2e-17 93.2 182 36.8
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 2.8e-17 92.8 169 36.7
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 4.8e-17 92.0 176 33.5
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 6.3e-17 91.7 194 32.0
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 8.3e-17 91.3 188 35.1
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 1.1e-16 90.9 181 33.7
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 1.4e-16 90.5 193 32.6
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 1.8e-16 90.1 194 35.6
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 3.1e-16 89.4 195 32.3
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 3.1e-16 89.4 197 36.0
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 5.4e-16 88.6 188 34.6
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.6e-15 87.0 187 34.8
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 3.5e-15 85.9 184 34.2
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 3.5e-15 85.9 185 31.9
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 4.5e-15 85.5 186 35.5
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 4.5e-15 85.5 194 34.0
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 5.9e-15 85.1 88 61.4
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 5.9e-15 85.1 193 34.7
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 5.9e-15 85.1 193 34.7
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 5.9e-15 85.1 188 33.0
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 5.9e-15 85.1 184 35.9
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 7.7e-15 84.7 79 62.0
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 7.7e-15 84.7 184 34.2
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 1.0e-14 84.3 185 33.5
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 1.3e-14 84.0 185 33.0
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 1.3e-14 84.0 189 32.8
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 1.3e-14 84.0 196 31.6
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.7e-14 83.6 189 37.6
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 2.9e-14 82.8 87 58.6
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 2.9e-14 82.8 186 36.0
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 2.9e-14 82.8 172 34.3
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 3.8e-14 82.4 187 34.2
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 5.0e-14 82.0 79 60.8
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 5.0e-14 82.0 79 60.8
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 6.5e-14 81.6 182 33.5
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 8.5e-14 81.3 189 33.9
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 8.5e-14 81.3 182 33.0
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 1.1e-13 80.9 186 33.9
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 1.1e-13 80.9 187 34.2
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 1.1e-13 80.9 176 34.1
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 1.1e-13 80.9 165 36.4
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 1.5e-13 80.5 183 33.9
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.5e-13 80.5 174 32.8
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 1.9e-13 80.1 182 31.9
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 1.9e-13 80.1 193 33.7
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.9e-13 80.1 189 32.8
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 1.9e-13 80.1 174 32.8
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 2.5e-13 79.7 193 32.6
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 2.5e-13 79.7 190 33.2
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 3.2e-13 79.3 168 33.9
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 3.2e-13 79.3 174 33.3
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 4.2e-13 79.0 182 32.4
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 4.2e-13 79.0 173 32.4
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 5.5e-13 78.6 197 31.5
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 9.4e-13 77.8 176 30.1
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 9.4e-13 77.8 196 32.7
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 9.4e-13 77.8 174 32.2
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 1.2e-12 77.4 196 31.6
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-12 77.4 196 32.7
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 1.2e-12 77.4 179 32.4
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 1.6e-12 77.0 193 30.6
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 1.6e-12 77.0 188 35.1
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 1.6e-12 77.0 189 31.2
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 2.1e-12 76.6 196 30.6
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 2.7e-12 76.3 184 32.1
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 3.6e-12 75.9 195 32.3
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 3.6e-12 75.9 194 31.4
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 4.7e-12 75.5 175 32.6
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 6.1e-12 75.1 173 32.4
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 8.0e-12 74.7 197 30.5
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 1.0e-11 74.3 172 34.9
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 1.4e-11 73.9 199 29.6
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 1.4e-11 73.9 175 32.0
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 1.8e-11 73.6 191 31.9
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 3.0e-11 72.8 170 31.8
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 4.0e-11 72.4 151 35.8
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 4.0e-11 72.4 185 31.9
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 4.0e-11 72.4 190 31.1
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 5.2e-11 72.0 179 30.7
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 6.8e-11 71.6 179 31.8
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 8.8e-11 71.2 168 32.1
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 1.2e-10 70.9 179 30.2
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 1.5e-10 70.5 185 32.4
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 2.0e-10 70.1 182 30.2
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 2.6e-10 69.7 188 31.9
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 2.6e-10 69.7 157 31.2
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 3.4e-10 69.3 191 29.3
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 3.7e-09 65.9 177 29.9
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 3.7e-09 65.9 191 28.3
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 6.3e-09 65.1 177 29.4
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 8.3e-09 64.7 173 30.6
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 7.0e-08 61.6 166 31.9
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 7.0e-08 61.6 178 30.3
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 1.6e-07 60.5 172 32.6
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 2.0e-07 60.1 177 31.1
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 5.9e-07 58.5 161 33.5
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 1.7e-06 57.0 167 28.7
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 2.3e-06 56.6 175 30.9
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 8.6e-06 54.7 166 29.5


User provided reference genes

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