Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 5.3e-37 157.1 77 100.0
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 5.3e-37 157.1 77 100.0
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 5.3e-37 157.1 77 100.0
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 3.4e-36 154.5 76 97.4
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 7.6e-36 153.3 76 97.4
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 9.9e-36 152.9 76 96.1
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 9.9e-36 152.9 76 96.1
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 9.9e-36 152.9 76 96.1
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.7e-35 152.1 76 96.1
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-35 151.4 76 96.1
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-35 151.4 76 96.1
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 2.9e-35 151.4 76 96.1
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.8e-35 151.0 76 94.7
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-34 149.1 76 94.7
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-34 148.7 76 93.4
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-34 148.7 76 93.4
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.4e-34 148.3 76 93.4
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.2e-34 147.5 76 92.1
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 5.5e-34 147.1 76 93.4
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.1e-31 139.4 76 90.8
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.5e-31 139.0 79 88.6
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.6e-28 128.3 83 77.1
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-27 125.6 77 80.5
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.9e-27 124.8 80 77.5
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.8e-27 124.4 79 78.5
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-27 124.4 80 77.5
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 3.8e-27 124.4 80 77.5
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 4.9e-27 124.0 77 79.2
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 6.5e-27 123.6 79 78.5
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 8.4e-27 123.2 80 77.5
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.1e-26 122.9 79 77.2
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-26 122.9 80 76.2
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.1e-26 122.9 80 76.2
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.4e-26 122.5 80 76.2
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-26 122.1 80 76.2
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-26 122.1 80 76.2
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-26 122.1 80 76.2
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 1.9e-26 122.1 80 76.2
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-26 122.1 80 76.2
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.5e-26 121.7 81 75.3
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.5e-26 121.7 76 80.3
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.2e-26 121.3 80 75.0
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 7.1e-26 120.2 81 74.1
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 7.1e-26 120.2 81 74.1
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-25 119.4 80 75.0
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 5.9e-20 100.5 74 67.6
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.8e-16 89.0 71 60.6
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.8e-16 89.0 71 59.2
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.8e-16 89.0 71 59.2
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 2.3e-16 88.6 71 59.2
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.3e-16 88.6 71 59.2
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 3.0e-16 88.2 72 65.3
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 1.5e-15 85.9 73 61.6
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.5e-15 85.9 73 64.4
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 1.9e-15 85.5 72 62.5
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 2.5e-15 85.1 72 61.1
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.5e-15 85.1 72 56.9
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 3.3e-15 84.7 72 61.1
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 3.3e-15 84.7 73 63.0
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.3e-15 84.3 73 63.0
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 5.7e-15 84.0 73 60.3
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.7e-15 84.0 71 59.2
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 7.4e-15 83.6 72 59.7
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 7.4e-15 83.6 73 60.3
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 9.7e-15 83.2 72 62.5
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.3e-14 82.8 75 56.0
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.6e-14 82.4 71 53.5
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 2.2e-14 82.0 74 55.4
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.8e-14 81.6 72 58.3
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 2.8e-14 81.6 72 58.3
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 2.8e-14 81.6 72 54.2
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.7e-14 81.3 71 59.2
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 3.7e-14 81.3 73 54.8
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 3.7e-14 81.3 72 56.9
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.8e-14 80.9 73 54.8
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 4.8e-14 80.9 72 59.7
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 4.8e-14 80.9 72 56.9
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 6.3e-14 80.5 73 56.2
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 8.2e-14 80.1 73 52.1
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 8.2e-14 80.1 72 58.3
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 8.2e-14 80.1 72 55.6
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.1e-13 79.7 71 59.2
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.1e-13 79.7 73 60.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.1e-13 79.7 72 55.6
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.4e-13 79.3 72 55.6
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.4e-13 79.3 69 59.4
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.4e-13 79.3 74 56.8
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.4e-13 79.3 72 55.6
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.4e-13 79.3 72 58.3
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.4e-13 79.3 71 57.7
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 1.8e-13 79.0 75 58.7
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-13 79.0 71 57.7
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 3.1e-13 78.2 79 51.9
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 3.1e-13 78.2 69 56.5
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 3.1e-13 78.2 71 56.3
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 3.1e-13 78.2 72 55.6
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 3.1e-13 78.2 71 56.3
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 4.1e-13 77.8 72 59.7
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.1e-13 77.8 72 59.7
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.1e-13 77.8 72 59.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 6.9e-13 77.0 72 56.9
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 6.9e-13 77.0 72 54.2
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 6.9e-13 77.0 72 58.3
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 9.1e-13 76.6 75 52.0
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 2.0e-12 75.5 72 55.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.0e-12 75.5 72 58.3
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.6e-12 75.1 72 55.6
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 3.4e-12 74.7 69 55.1
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 4.5e-12 74.3 76 52.6
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 4.5e-12 74.3 69 55.1
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 5.9e-12 73.9 72 48.6
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 1.0e-11 73.2 69 53.6
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 1.3e-11 72.8 69 49.3
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.7e-11 72.4 82 48.8
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.7e-11 72.4 71 52.1
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.7e-11 72.4 72 55.6
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 2.2e-11 72.0 77 50.6
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 5.0e-11 70.9 78 50.0
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 5.0e-11 70.9 69 52.2
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 5.0e-11 70.9 72 51.4
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 6.5e-11 70.5 72 51.4
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.1e-10 69.7 71 52.1
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.4e-10 69.3 71 50.7
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 4.2e-10 67.8 74 48.6
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.2e-09 66.2 69 49.3
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.6e-09 65.9 69 50.7
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 1.6e-09 65.9 71 49.3
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 2.1e-09 65.5 83 45.8
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.1e-09 65.5 70 47.1
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 2.7e-09 65.1 68 52.9
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 2.7e-09 65.1 71 46.5
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 4.6e-09 64.3 69 47.8
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 7.9e-09 63.5 78 43.6
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.9e-09 63.5 86 48.8
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.8e-08 62.4 71 47.9
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 1.8e-08 62.4 71 47.9
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.8e-08 62.4 71 43.7
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.0e-08 61.6 71 45.1
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.0e-07 58.9 71 40.8
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.3e-07 58.2 74 45.9
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 4.4e-07 57.8 59 50.8
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 4.4e-07 57.8 89 38.2
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 4.4e-07 57.8 78 42.3
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.7e-07 57.4 74 45.9
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 9.7e-07 56.6 69 40.6
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.3e-06 56.2 71 40.8
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 8.2e-06 53.5 75 38.7


User provided reference genes

Program Settings