Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 5.7e-130 467.6 241 100.0
A09p64030 Brassica napus HOM05D004411 ORTHO05D032662 2.3e-83 312.8 241 73.4
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.9e-81 305.8 225 78.7
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.9e-80 303.1 165 97.6
BcaC08g42924 Brassica carinata HOM05D004411 ORTHO05D032367 7.1e-48 194.9 112 94.6
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 2.1e-44 183.3 111 89.2
BolC6t35294H Brassica oleracea HOM05D004411 ORTHO05D032367 5.3e-43 178.7 145 73.1
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 3.2e-32 142.9 120 71.7
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.1e-31 140.2 130 65.4
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.8e-30 137.1 127 63.8
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 4.8e-28 129.0 119 64.7
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 4.8e-28 129.0 119 64.7
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 4.8e-28 129.0 119 64.7
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 4.1e-27 125.9 123 61.0
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.5e-26 124.0 121 62.8
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.0e-26 123.6 121 62.8
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 3.4e-26 122.9 146 56.8
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 4.2e-24 115.9 164 48.8
C06p01630 Brassica napus HOM05D004411 ORTHO05D032367 3.7e-20 102.8 126 54.0
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 2.4e-19 100.1 119 55.5
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 1.2e-18 97.8 101 62.4
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 5.9e-18 95.5 88 63.6
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 2.0e-10 70.5 138 40.6
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 2.7e-10 70.1 98 50.0
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 2.7e-10 70.1 98 50.0
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 1.3e-09 67.8 98 48.0
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.9e-09 66.6 98 46.9
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 2.9e-09 66.6 138 39.1
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 5.0e-09 65.9 89 50.6
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 8.5e-09 65.1 73 54.8
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 1.1e-08 64.7 89 50.6
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 4.2e-08 62.8 95 45.3
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 9.4e-08 61.6 98 43.9
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 9.4e-08 61.6 98 43.9
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 9.4e-08 61.6 98 43.9
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 9.4e-08 61.6 94 43.6
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 9.4e-08 61.6 99 43.4
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.2e-07 61.2 92 45.7
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 1.2e-07 61.2 92 45.7
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.2e-07 61.2 92 45.7
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 1.6e-07 60.8 89 47.2
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.6e-07 60.8 94 44.7
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.6e-07 60.8 72 52.8
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.7e-07 60.1 92 44.6
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 3.6e-07 59.7 92 44.6
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.6e-07 59.7 46 69.6
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.6e-07 59.7 92 44.6
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 6.1e-07 58.9 92 43.5
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 6.1e-07 58.9 92 43.5
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 6.1e-07 58.9 92 43.5
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 8.0e-07 58.5 38 78.9
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 8.0e-07 58.5 105 41.0
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 8.0e-07 58.5 46 67.4
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.0e-06 58.2 38 76.3
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.0e-06 58.2 90 45.6
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.4e-06 57.8 90 44.4
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.4e-06 57.8 92 42.4
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.4e-06 57.8 39 76.9
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 1.4e-06 57.8 59 55.9
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.4e-06 57.8 92 42.4
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 1.4e-06 57.8 101 39.6
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.4e-06 57.8 92 42.4
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.4e-06 57.8 92 42.4
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 1.4e-06 57.8 92 43.5
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.4e-06 57.8 92 43.5
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 1.4e-06 57.8 46 67.4
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 1.8e-06 57.4 37 81.1
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 1.8e-06 57.4 46 67.4
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.8e-06 57.4 37 81.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.8e-06 57.4 101 40.6
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.8e-06 57.4 101 39.6
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.8e-06 57.4 92 43.5
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.8e-06 57.4 46 67.4
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 1.8e-06 57.4 46 67.4
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.8e-06 57.4 92 43.5
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 2.3e-06 57.0 48 62.5
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.3e-06 57.0 46 65.2
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 2.3e-06 57.0 46 65.2
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 2.3e-06 57.0 46 65.2
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 2.3e-06 57.0 49 63.3
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 4.0e-06 56.2 91 42.9
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 4.0e-06 56.2 46 65.2
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 4.0e-06 56.2 50 64.0
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 4.0e-06 56.2 37 78.4
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 4.0e-06 56.2 50 64.0
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 4.0e-06 56.2 39 74.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.0e-06 56.2 37 78.4
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 5.2e-06 55.8 89 42.7
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 5.2e-06 55.8 46 65.2
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.2e-06 55.8 47 63.8
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 6.8e-06 55.5 92 42.4
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 6.8e-06 55.5 89 43.8
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 6.8e-06 55.5 37 78.4
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 6.8e-06 55.5 46 65.2
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 6.8e-06 55.5 37 78.4
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 6.8e-06 55.5 37 78.4
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 6.8e-06 55.5 50 64.0
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 6.8e-06 55.5 50 64.0
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 8.8e-06 55.1 37 78.4
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 8.8e-06 55.1 37 78.4
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 8.8e-06 55.1 37 75.7
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 8.8e-06 55.1 92 41.3
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 8.8e-06 55.1 37 75.7
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.8e-06 55.1 37 75.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 8.8e-06 55.1 37 75.7
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 8.8e-06 55.1 37 78.4
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 8.8e-06 55.1 37 75.7


User provided reference genes

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