Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 7.4e-130 467.2 240 100.0
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 7.4e-130 467.2 240 100.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 8.8e-123 443.7 240 95.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.7e-116 422.2 221 98.2
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 6.7e-115 417.5 240 92.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.2e-109 397.5 240 86.7
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.2e-109 397.5 240 86.7
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 9.4e-109 397.1 240 87.1
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 4.7e-108 394.8 240 85.8
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 8.0e-108 394.0 242 86.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-107 393.3 242 86.4
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.8e-107 392.9 241 87.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.0e-107 392.1 242 86.4
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.0e-107 392.1 242 86.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 5.0e-102 374.8 241 82.6
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.6e-98 362.5 241 80.9
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.1e-88 330.5 259 69.9
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.4e-88 329.3 240 73.3
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.1e-85 320.5 241 71.8
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.8e-83 311.2 178 87.6
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 8.9e-83 310.8 241 70.5
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 9.8e-82 307.4 185 83.8
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.2e-73 279.6 242 62.8
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.7e-73 278.9 242 62.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.9e-73 278.5 247 60.7
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 6.4e-73 278.1 244 61.5
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 8.3e-73 277.7 242 62.4
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.4e-72 276.9 248 59.3
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-72 276.9 237 64.6
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.4e-72 276.2 232 62.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.2e-72 275.8 237 64.6
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.2e-72 275.8 245 60.4
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 4.1e-72 275.4 244 61.9
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.2e-71 273.9 188 70.7
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.6e-71 273.5 249 61.4
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.1e-71 273.1 236 61.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.1e-71 273.1 189 70.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 3.5e-71 272.3 245 59.6
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 4.6e-71 271.9 243 62.1
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.6e-71 271.9 246 61.0
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 4.6e-71 271.9 245 62.9
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 6.0e-71 271.6 227 61.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 7.8e-71 271.2 237 59.5
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 7.8e-71 271.2 237 62.9
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.0e-70 270.8 196 68.9
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.0e-70 270.8 242 62.4
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.3e-70 270.4 242 59.9
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 3.0e-70 269.2 242 59.5
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 3.0e-70 269.2 246 61.8
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.0e-70 269.2 244 60.2
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.9e-70 268.9 241 61.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.6e-70 268.1 240 60.8
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 6.6e-70 268.1 243 59.7
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.6e-70 267.7 201 66.7
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.1e-69 267.3 240 59.2
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.9e-69 266.5 245 60.4
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.5e-69 266.2 244 59.8
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.3e-69 265.4 191 68.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 5.6e-69 265.0 163 84.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 7.3e-69 264.6 241 60.6
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 9.5e-69 264.2 196 67.3
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 9.5e-69 264.2 185 68.1
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 9.5e-69 264.2 241 59.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.2e-68 263.8 245 60.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.2e-68 263.8 242 58.3
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.6e-68 263.5 238 61.3
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.1e-67 260.8 224 61.6
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.8e-67 260.0 185 67.0
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.3e-67 259.6 228 60.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.1e-67 259.2 243 58.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.1e-67 259.2 243 58.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 3.1e-67 259.2 244 59.0
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 3.1e-67 259.2 179 69.3
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 4.0e-67 258.8 240 58.3
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 5.2e-67 258.5 241 61.8
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 5.2e-67 258.5 240 60.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.2e-66 257.3 245 59.2
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.2e-66 257.3 245 59.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.2e-66 257.3 185 65.9
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.4e-66 255.8 178 70.8
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 4.4e-66 255.4 239 58.6
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.6e-66 254.6 248 55.6
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.3e-65 253.8 241 58.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.3e-65 253.8 192 66.1
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.7e-65 253.4 241 58.5
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.7e-65 253.4 236 59.3
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.7e-65 253.4 240 55.0
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.9e-65 252.7 151 80.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.9e-65 251.9 205 61.5
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 4.9e-65 251.9 178 70.2
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 8.4e-65 251.1 204 60.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.1e-64 250.8 178 69.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.9e-64 250.0 178 69.1
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.2e-64 249.2 241 54.8
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.4e-64 248.4 226 57.5
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 5.4e-64 248.4 245 55.9
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 7.1e-64 248.1 176 68.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 7.1e-64 248.1 199 62.3
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 9.2e-64 247.7 254 55.1
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.2e-63 247.3 183 66.1
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 2.1e-63 246.5 247 55.5
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.5e-63 245.7 183 65.6
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.6e-63 245.4 178 66.9
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 6.0e-63 245.0 189 66.1
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 7.8e-63 244.6 251 54.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 7.8e-63 244.6 184 66.8
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.3e-62 243.8 246 57.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.3e-62 243.8 243 55.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.3e-62 243.0 175 67.4
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.9e-62 242.3 239 53.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 3.9e-62 242.3 252 56.3
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.1e-61 240.7 183 65.0
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.5e-61 240.4 213 59.6
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.9e-61 240.0 185 61.6
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 5.6e-61 238.4 246 58.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 7.3e-61 238.0 238 54.2
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.1e-60 236.5 175 65.7
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.1e-60 236.5 213 58.2
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.6e-60 235.7 228 54.8
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.1e-59 234.2 163 70.6
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.1e-59 232.6 169 65.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.5e-58 230.3 218 56.4
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 3.4e-58 229.2 247 52.2
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 6.4e-57 224.9 243 52.3
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 8.4e-57 224.6 239 54.0
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.2e-56 222.2 212 59.0
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.3e-56 221.1 163 65.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-55 219.9 147 72.1
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.1e-55 219.9 246 52.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.1e-55 219.9 187 57.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.7e-55 219.5 236 53.0
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.6e-55 218.8 204 53.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 7.8e-55 218.0 172 62.2
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.0e-54 217.6 172 62.8
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.9e-54 215.7 208 54.8
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.9e-53 213.4 173 61.8
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 5.3e-51 205.3 173 57.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.5e-50 202.2 175 58.9
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.6e-50 201.4 162 64.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 7.6e-50 201.4 208 56.2
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-44 183.3 132 64.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-39 167.2 147 60.5
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 6.0e-39 165.2 112 69.6
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.3e-37 159.5 217 40.6
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 4.5e-34 149.1 173 43.4
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.2e-33 146.7 106 65.1
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.7e-31 139.8 178 42.1
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.0e-30 137.9 165 48.5
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.6e-28 130.6 161 42.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 3.7e-28 129.4 151 42.4
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.9e-22 109.4 76 67.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.6e-18 96.7 154 35.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.3e-17 94.4 86 57.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 6.1e-15 85.5 71 62.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 6.1e-15 85.5 71 62.0
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 4.4e-13 79.3 59 69.5
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 4.4e-13 79.3 74 48.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.0e-09 68.2 102 44.1
Aa31sc213G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.9e-08 63.9 56 66.1


User provided reference genes

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