Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p00980 Brassica napus HOM05D000732 ORTHO05D027335 1.9e-23 111.7 58 100.0
BcaC08g42882 Brassica carinata HOM05D000732 ORTHO05D027335 3.6e-22 107.5 57 96.5
BraA01t03419Z Brassica rapa HOM05D000732 ORTHO05D027335 5.2e-21 103.6 57 91.2
BcaC02g09190 Brassica carinata HOM05D000732 ORTHO05D013253 2.9e-19 97.8 55 90.9
C04p39860 Brassica napus HOM05D038259 ORTHO05D013253 2.9e-19 97.8 55 90.9
BolC6t35234H Brassica oleracea HOM05D000732 ORTHO05D027335 9.2e-18 92.8 50 96.0
BcaC02g09354 Brassica carinata HOM05D000732 ORTHO05D013253 6.6e-16 86.7 52 84.6
BcaB03g11954 Brassica carinata HOM05D000732 ORTHO05D007225 3.1e-13 77.8 56 69.6
BcaC07g39214 Brassica carinata HOM05D000732 ORTHO05D007225 3.1e-13 77.8 56 69.6
BraA09t39596Z Brassica rapa HOM05D000732 ORTHO05D007225 3.1e-13 77.8 56 67.9
AT1G23790 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 5.2e-13 77.0 56 67.9
BcaC05g26291 Brassica carinata HOM05D000732 ORTHO05D007225 5.2e-13 77.0 56 67.9
C05p22970 Brassica napus HOM05D000732 ORTHO05D007225 5.2e-13 77.0 56 67.9
BolC5t30996H Brassica oleracea HOM05D000732 ORTHO05D007225 5.2e-13 77.0 56 67.9
Carub.0001s2330 Capsella rubella HOM05D000732 ORTHO05D007225 5.2e-13 77.0 56 67.9
A09p41030 Brassica napus HOM05D000732 ORTHO05D007225 6.8e-13 76.6 56 66.1
Thhalv10007309m.g Eutrema salsugineum HOM05D000732 ORTHO05D007225 1.2e-12 75.9 56 67.9
AL1G37550 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 1.5e-12 75.5 56 66.1
C08p22100 Brassica napus HOM05D000732 ORTHO05D007225 2.0e-12 75.1 56 66.1
BolC8t49855H Brassica oleracea HOM05D000732 ORTHO05D007225 2.0e-12 75.1 56 66.1
A08p28020 Brassica napus HOM05D000732 ORTHO05D007225 7.5e-12 73.2 55 65.5
BraA08t34732Z Brassica rapa HOM05D000732 ORTHO05D007225 7.5e-12 73.2 55 65.5
AL2G29650 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 1.7e-11 72.0 55 60.0
Carub.0002s1703 Capsella rubella HOM05D000732 ORTHO05D007225 3.7e-11 70.9 56 58.9
Aa31LG7G7670 Aethionema arabicum HOM05D000732 ORTHO05D007225 4.9e-11 70.5 56 60.7
CARHR024210 Cardamine hirsuta HOM05D000732 ORTHO05D007225 4.9e-11 70.5 55 61.8
AT1G70340 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 6.4e-11 70.1 56 58.9
Sp5g25460 Schrenkiella parvula HOM05D000732 ORTHO05D007225 8.3e-11 69.7 56 58.9
Dinv24859 Davidia involucrata HOM05D000732 ORTHO05D007225 3.5e-09 64.3 56 55.4
CARHR063520 Cardamine hirsuta HOM05D000732 ORTHO05D007225 1.0e-08 62.8 55 54.5
Cpa.g.sc69.30 Carica papaya HOM05D000732 ORTHO05D007225 1.0e-08 62.8 56 57.1
AUR62005377 Chenopodium quinoa HOM05D000732 ORTHO05D007225 1.7e-08 62.0 56 53.6
AUR62014040 Chenopodium quinoa HOM05D000732 ORTHO05D007225 1.7e-08 62.0 56 53.6
Ciclev10031068m.g Citrus clementina HOM05D000732 ORTHO05D007225 2.3e-08 61.6 56 55.4
Eucgr.B03344 Eucalyptus grandis HOM05D000732 ORTHO05D007225 2.3e-08 61.6 56 55.4
EL10Ac6g13672 Beta vulgaris HOM05D000732 ORTHO05D007225 3.0e-08 61.2 56 53.6
VMungo1215G1082 Vigna mungo HOM05D000732 ORTHO05D007225 3.9e-08 60.8 57 54.4
Cfa009143 Carpinus fangiana HOM05D000732 ORTHO05D007225 5.1e-08 60.5 56 53.6
Haze_12177 Corylus avellana HOM05D000732 ORTHO05D007225 5.1e-08 60.5 56 53.6
Nn4g22799 Nelumbo nucifera HOM05D000732 ORTHO05D007225 6.6e-08 60.1 56 55.4
Aa31LG4G10600 Aethionema arabicum HOM05D000732 ORTHO05D007225 8.6e-08 59.7 54 53.7
Ah.02g129920 Amaranthus hybridus HOM05D000732 ORTHO05D007225 8.6e-08 59.7 56 50.0
Lj2g0021682 Lotus japonicus HOM05D000732 ORTHO05D007225 8.6e-08 59.7 57 54.4
Medtr5g034370 Medicago truncatula HOM05D000732 ORTHO05D007225 8.6e-08 59.7 57 54.4
arahy.Tifrunner.gnm1.ann1.V0668Y Arachis hypogaea HOM05D000732 ORTHO05D007225 1.1e-07 59.3 54 59.3
TPR.G13569 Trifolium pratense HOM05D000732 ORTHO05D007225 1.1e-07 59.3 57 54.4
Phvul.002G071800 Phaseolus vulgaris HOM05D000732 ORTHO05D007225 1.5e-07 58.9 57 52.6
THA.LOC104808945 Tarenaya hassleriana HOM05D000732 ORTHO05D007225 1.5e-07 58.9 57 50.9
arahy.Tifrunner.gnm1.ann1.S6CLIJ Arachis hypogaea HOM05D000732 ORTHO05D007225 1.9e-07 58.5 54 57.4
Thecc.02G248500 Theobroma cacao HOM05D000732 ORTHO05D007225 1.9e-07 58.5 56 51.8
FvH4_4g34410 Fragaria vesca HOM05D000732 ORTHO05D007225 2.5e-07 58.2 56 50.0
FAN12G2269 Fragaria x ananassa HOM05D000732 ORTHO05D007225 2.5e-07 58.2 56 50.0
FAN22G0662 Fragaria x ananassa HOM05D000732 ORTHO05D007225 2.5e-07 58.2 56 50.0
Manes.12G029000 Manihot esculenta HOM05D000732 ORTHO05D007225 2.5e-07 58.2 56 51.8
Actinidia13509 Actinidia chinensis HOM05D000732 ORTHO05D007225 3.3e-07 57.8 56 50.0
Duzib248G1152 Durio zibethinus HOM05D000732 ORTHO05D007225 3.3e-07 57.8 56 50.0
FAN07G1798 Fragaria x ananassa HOM05D000732 ORTHO05D007225 3.3e-07 57.8 55 50.9
QL08p001512 Quercus lobata HOM05D000732 ORTHO05D007225 3.3e-07 57.8 56 51.8
Ca_04598_v3 Cicer arietinum L. HOM05D000732 ORTHO05D007225 4.3e-07 57.4 57 52.6
Aqoxy3G01008 Aquilegia oxysepala HOM05D000732 ORTHO05D007225 5.6e-07 57.0 57 50.9
Dinv15302 Davidia involucrata HOM05D000732 ORTHO05D007225 5.6e-07 57.0 56 50.0
Lalb_Chr05g0216901 Lupinus albus HOM05D000732 ORTHO05D007225 5.6e-07 57.0 57 52.6
Oeu056733.2 Olea europaea HOM05D000732 ORTHO05D007225 5.6e-07 57.0 57 47.4
RcHm_v2.0_Chr4g0443831 Rosa chinensis HOM05D000732 ORTHO05D007225 5.6e-07 57.0 56 48.2
Actinidia15046 Actinidia chinensis HOM05D000732 ORTHO05D007225 7.3e-07 56.6 56 48.2
Glyma.01G031300 Glycine max HOM05D000732 ORTHO05D007225 7.3e-07 56.6 57 50.9
SGA_v2.0_scaffold165G38244 Striga asiatica HOM05D000732 ORTHO05D007225 7.3e-07 56.6 56 50.0
Cc11_g14660 Coffea canephora HOM05D000732 ORTHO05D007225 9.5e-07 56.2 56 46.4
Glyma.02G034500 Glycine max HOM05D000732 ORTHO05D007225 9.5e-07 56.2 57 50.9
Gohir.A03G140000 Gossypium hirsutum HOM05D000732 ORTHO05D007225 9.5e-07 56.2 56 50.0
Gohir.D02G162800 Gossypium hirsutum HOM05D000732 ORTHO05D007225 9.5e-07 56.2 56 50.0
Gorai.005G182800 Gossypium raimondii HOM05D000732 ORTHO05D007225 9.5e-07 56.2 56 50.0
GSVIVG01020241001 Vitis vinifera HOM05D000732 ORTHO05D007225 9.5e-07 56.2 56 50.0
CSS0045437 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007225 1.2e-06 55.8 51 54.9
CANSAT01G2807 Cannabis sativa HOM05D000732 ORTHO05D007225 1.2e-06 55.8 57 49.1
Migut.L01414 Erythranthe guttata HOM05D000732 ORTHO05D007225 1.2e-06 55.8 56 50.0
FAN17G2219 Fragaria x ananassa HOM05D000732 ORTHO05D007225 1.2e-06 55.8 56 48.2
TWI75G0496 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 1.2e-06 55.8 56 50.0
MSTRG.7899 Avicennia marina HOM05D000732 ORTHO05D007225 1.6e-06 55.5 56 48.2
Psat2g106200 Pisum sativum HOM05D000732 ORTHO05D007225 1.6e-06 55.5 52 55.8
Hund25346 Selenicereus undatus HOM05D000732 ORTHO05D007225 1.6e-06 55.5 56 48.2
TAR629G1031 Trochodendron aralioides HOM05D000732 ORTHO05D007225 1.6e-06 55.5 56 48.2
MD16G1092400 Malus domestica HOM05D000732 ORTHO05D007225 2.1e-06 55.1 56 46.4
DCAR_031102 Daucus carota HOM05D000732 ORTHO05D007225 2.8e-06 54.7 56 50.0
TAR371G0352 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.8e-06 54.7 56 48.2
TAR680G0005 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.8e-06 54.7 57 47.4
TAR680G0006 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.8e-06 54.7 57 47.4
COL.COLO4_36966 Corchorus olitorius HOM05D000732 ORTHO05D007225 3.6e-06 54.3 56 46.4
MD13G1091800 Malus domestica HOM05D000732 ORTHO05D007225 3.6e-06 54.3 56 46.4
Sabra08G0145800 Salix brachista HOM05D000732 ORTHO05D007225 3.6e-06 54.3 56 48.2
TWI36G1131 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 3.6e-06 54.3 56 48.2
CiPaw.05G150800 Carya illinoinensis HOM05D000732 ORTHO05D007225 4.7e-06 53.9 56 48.2
Potri.008G192300 Populus trichocarpa HOM05D000732 ORTHO05D007225 4.7e-06 53.9 56 48.2
Duzib268G1676 Durio zibethinus HOM05D000732 ORTHO05D007225 8.1e-06 53.1 56 48.2
Hund05994 Selenicereus undatus HOM05D000732 ORTHO05D007225 8.1e-06 53.1 56 50.0


User provided reference genes

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