Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.8e-111 404.8 202 100.0
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.8e-111 404.8 202 100.0
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 5.0e-111 404.4 202 99.5
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 3.8e-103 378.3 193 97.4
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 3.8e-103 378.3 193 97.4
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 5.8e-67 258.1 202 68.3
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.1e-65 253.8 198 69.2
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.9e-63 245.4 201 67.7
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.4e-57 226.1 180 65.6
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.8e-53 212.6 205 59.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.8e-51 204.9 189 61.9
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 5.1e-23 112.1 174 43.1
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 8.7e-23 111.3 208 42.3
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-22 110.5 188 39.4
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-19 99.4 164 41.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.4e-19 99.4 164 41.5
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.0e-18 97.8 207 36.7
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.0e-18 97.8 207 36.7
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.0e-18 97.8 207 36.7
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.0e-18 97.8 182 39.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.3e-18 97.4 207 36.7
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.7e-18 97.1 179 39.1
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.7e-18 97.1 168 39.3
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-18 96.3 181 38.1
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-18 96.3 164 40.2
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 2.9e-18 96.3 164 40.2
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 2.9e-18 96.3 164 40.2
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.9e-18 96.3 207 37.2
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 3.8e-18 95.9 207 36.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 4.9e-18 95.5 180 38.3
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 6.5e-18 95.1 183 38.3
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 8.4e-18 94.7 178 36.0
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.4e-17 94.0 181 37.6
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.9e-17 93.6 160 40.0
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.9e-17 93.6 170 41.8
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 3.2e-17 92.8 168 38.7
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 3.2e-17 92.8 164 38.4
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 7.1e-17 91.7 175 37.7
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.2e-16 90.9 171 35.7
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-16 90.9 182 37.4
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.2e-16 90.9 170 37.6
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.1e-16 90.1 173 36.4
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-16 89.7 168 40.5
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.7e-16 89.7 168 40.5
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.7e-16 89.7 168 40.5
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 2.7e-16 89.7 173 36.4
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 3.5e-16 89.4 186 39.2
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.6e-16 89.0 173 39.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.6e-16 89.0 184 39.1
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.6e-16 89.0 184 39.1
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 6.0e-16 88.6 175 40.0
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 7.9e-16 88.2 179 38.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.9e-16 88.2 189 39.7
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-15 87.4 168 39.3
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.0e-15 86.3 190 32.6
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 3.9e-15 85.9 179 38.5
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 3.9e-15 85.9 166 36.7
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.1e-15 85.5 195 34.9
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 6.7e-15 85.1 158 38.0
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-15 85.1 168 39.3
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 6.7e-15 85.1 168 39.3
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 6.7e-15 85.1 180 35.6
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 6.7e-15 85.1 195 35.4
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.7e-15 85.1 180 36.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 6.7e-15 85.1 177 35.0
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.7e-15 84.7 190 34.7
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 8.7e-15 84.7 185 31.9
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 8.7e-15 84.7 181 36.5
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.1e-14 84.3 167 34.7
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.5e-14 84.0 180 31.7
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.9e-14 83.6 214 30.8
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.9e-14 83.6 181 37.0
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.5e-14 83.2 203 31.0
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.5e-14 83.2 181 35.9
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.3e-14 82.8 177 33.9
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.3e-14 82.8 177 33.9
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 3.3e-14 82.8 160 34.4
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 3.3e-14 82.8 166 38.0
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.3e-14 82.4 171 35.7
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 4.3e-14 82.4 177 33.9
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 4.3e-14 82.4 187 34.8
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 4.3e-14 82.4 182 33.5
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 5.7e-14 82.0 170 37.1
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 5.7e-14 82.0 173 34.7
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.7e-14 82.0 167 35.3
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 7.4e-14 81.6 225 30.7
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 9.6e-14 81.3 161 36.6
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 9.6e-14 81.3 190 34.7
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.3e-13 80.9 208 35.1
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.1e-13 80.1 211 34.1
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.1e-13 80.1 177 33.3
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.1e-13 80.1 181 37.6
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.1e-13 80.1 177 34.5
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.1e-13 80.1 203 34.0
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.8e-13 79.7 181 37.6
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 2.8e-13 79.7 177 33.9
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.7e-13 79.3 165 35.8
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 4.8e-13 79.0 188 32.4
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 4.8e-13 79.0 181 34.3
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 8.2e-13 78.2 169 32.5
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 8.2e-13 78.2 219 32.0
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.1e-12 77.8 195 31.8
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.1e-12 77.8 169 33.1
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.4e-12 77.4 163 35.0
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-12 77.0 181 37.0
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.8e-12 77.0 189 34.4
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.4e-12 76.6 166 34.3
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.1e-12 76.3 174 31.6
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 4.1e-12 75.9 176 30.7
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 5.3e-12 75.5 214 29.9
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 5.3e-12 75.5 214 29.9
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 5.3e-12 75.5 164 32.9
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.9e-12 75.1 185 33.0
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 6.9e-12 75.1 186 33.3
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 9.0e-12 74.7 193 34.2
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 9.0e-12 74.7 160 35.0
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.2e-11 74.3 186 32.3
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.5e-11 73.9 192 32.8
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 2.6e-11 73.2 195 31.8
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 3.4e-11 72.8 143 39.2
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.4e-11 72.8 164 35.4
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.4e-11 72.8 182 34.6
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 4.5e-11 72.4 159 34.6
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.6e-11 71.6 167 37.7
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 7.6e-11 71.6 176 31.8
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 7.6e-11 71.6 179 31.8
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 7.6e-11 71.6 212 33.0
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.0e-10 71.2 175 32.0
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.0e-10 71.2 162 31.5
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.7e-10 70.5 162 33.3
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.2e-10 70.1 197 29.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.8e-10 69.3 163 32.5
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.8e-10 69.3 168 36.9
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 3.8e-10 69.3 174 31.6
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 5.0e-10 68.9 164 31.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 6.5e-10 68.6 201 28.9
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.4e-09 67.4 164 31.7
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.2e-09 66.2 177 33.3
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 5.5e-09 65.5 198 32.3
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 5.5e-09 65.5 163 34.4
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 7.1e-09 65.1 184 31.0
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-08 64.3 167 31.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 3.5e-08 62.8 188 33.5
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 6.1e-08 62.0 183 27.9
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.1e-08 62.0 166 28.3
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 6.1e-08 62.0 177 29.4
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 6.1e-08 62.0 186 31.2
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 7.9e-08 61.6 211 25.1
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 7.9e-08 61.6 164 28.7
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.0e-07 61.2 211 26.5
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 3.0e-07 59.7 166 28.9
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 3.9e-07 59.3 183 27.9
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.9e-06 57.0 184 32.6
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 7.4e-06 55.1 203 27.1
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 7.4e-06 55.1 251 26.3


User provided reference genes

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