Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 3.0e-34 147.9 73 100.0
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 2.0e-33 145.2 73 97.3
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 3.1e-23 111.3 65 87.7
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 2.3e-21 105.1 51 100.0
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 2.9e-21 104.8 69 76.8
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 2.9e-21 104.8 69 76.8
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 2.9e-21 104.8 69 76.8
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 2.9e-21 104.8 69 76.8
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 8.6e-21 103.2 69 75.4
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 1.5e-20 102.4 69 75.4
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 1.5e-20 102.4 69 75.4
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 1.5e-20 102.4 69 75.4
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.5e-20 102.4 69 75.4
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 5.5e-20 100.5 69 73.9
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 5.5e-20 100.5 61 83.6
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.6e-19 99.0 68 73.5
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.6e-19 99.0 69 73.9
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 6.1e-19 97.1 69 72.5
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 8.0e-19 96.7 69 72.5
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 1.0e-18 96.3 69 72.5
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 3.0e-18 94.7 60 75.0
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 2.0e-17 92.0 69 69.6
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.2e-16 88.6 62 71.0
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 7.0e-15 83.6 65 64.6
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.2e-14 82.8 53 73.6
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 2.0e-14 82.0 53 73.6
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 2.0e-14 82.0 53 71.7
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 2.7e-14 81.6 53 73.6
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 2.7e-14 81.6 53 73.6
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 2.7e-14 81.6 53 73.6
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 5.9e-14 80.5 68 60.3
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 7.8e-14 80.1 53 71.7
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 7.8e-14 80.1 51 76.5
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.0e-13 79.7 53 71.7
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 1.3e-13 79.3 51 74.5
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 1.7e-13 79.0 62 61.3
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.7e-13 79.0 43 83.7
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.7e-13 79.0 53 71.7
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.7e-13 79.0 53 71.7
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 2.3e-13 78.6 49 77.6
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 2.3e-13 78.6 68 58.8
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.9e-13 78.2 53 69.8
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 2.9e-13 78.2 46 78.3
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 3.9e-13 77.8 53 69.8
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.9e-13 77.8 60 61.7
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.9e-13 77.8 60 61.7
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 5.0e-13 77.4 51 72.5
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 5.0e-13 77.4 53 69.8
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 5.0e-13 77.4 53 71.7
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 5.0e-13 77.4 60 63.3
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 5.0e-13 77.4 60 63.3
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 5.0e-13 77.4 60 63.3
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 5.0e-13 77.4 53 69.8
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 5.0e-13 77.4 53 69.8
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 5.0e-13 77.4 51 72.5
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 5.0e-13 77.4 53 69.8
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 5.0e-13 77.4 51 74.5
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 6.6e-13 77.0 52 71.2
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 6.6e-13 77.0 52 71.2
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 6.6e-13 77.0 53 67.9
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 8.6e-13 76.6 51 70.6
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 8.6e-13 76.6 51 70.6
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 8.6e-13 76.6 68 57.4
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 8.6e-13 76.6 40 90.0
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 8.6e-13 76.6 64 59.4
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 1.1e-12 76.3 53 69.8
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.1e-12 76.3 51 72.5
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 1.1e-12 76.3 47 74.5
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.5e-12 75.9 53 67.9
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 1.5e-12 75.9 53 67.9
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.9e-12 75.5 51 70.6
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 1.9e-12 75.5 47 74.5
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 1.9e-12 75.5 51 72.5
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.9e-12 75.5 51 72.5
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.9e-12 75.5 51 72.5
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 3.3e-12 74.7 48 72.9
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 3.3e-12 74.7 53 67.9
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 3.3e-12 74.7 76 52.6
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 4.3e-12 74.3 46 76.1
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 4.3e-12 74.3 81 49.4
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 4.3e-12 74.3 53 66.0
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 4.3e-12 74.3 49 71.4
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 4.3e-12 74.3 51 66.7
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 4.3e-12 74.3 41 82.9
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 5.6e-12 73.9 53 66.0
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 7.3e-12 73.6 49 71.4
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 7.3e-12 73.6 49 71.4
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 7.3e-12 73.6 63 57.1
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 7.3e-12 73.6 43 79.1
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 7.3e-12 73.6 46 71.7
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 9.5e-12 73.2 53 66.0
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 9.5e-12 73.2 46 73.9
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 1.2e-11 72.8 41 80.5
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 1.2e-11 72.8 51 70.6
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.6e-11 72.4 53 66.0
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 2.1e-11 72.0 52 71.2
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 2.1e-11 72.0 43 76.7
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 2.1e-11 72.0 54 64.8
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 2.8e-11 71.6 45 75.6
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 2.8e-11 71.6 57 61.4
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 2.8e-11 71.6 43 76.7
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 3.6e-11 71.2 42 78.6
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 3.6e-11 71.2 47 70.2
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.7e-11 70.9 51 66.7
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.7e-11 70.9 51 66.7
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 8.0e-11 70.1 51 64.7
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.0e-10 69.7 51 64.7
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.0e-10 69.7 51 64.7
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.0e-10 69.7 51 64.7
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.0e-10 69.7 43 74.4
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.0e-10 69.7 45 71.1
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.8e-10 68.9 53 60.4
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.8e-10 68.9 44 72.7
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 2.3e-10 68.6 51 62.7
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 2.3e-10 68.6 43 74.4
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 3.1e-10 68.2 40 77.5
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.0e-10 67.8 51 64.7
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 8.9e-10 66.6 40 75.0
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 8.9e-10 66.6 40 75.0
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 3.4e-09 64.7 68 45.6


User provided reference genes

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