Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g42847 Brassica carinata HOM05D007582 ORTHO05D009645 3.2e-58 228.0 101 100.0
C06p00630 Brassica napus HOM05D007582 ORTHO05D009645 3.2e-58 228.0 101 100.0
BolC6t35199H Brassica oleracea HOM05D007582 ORTHO05D009645 6.0e-57 223.8 101 99.0
BcaB07g33949 Brassica carinata HOM05D007582 ORTHO05D009645 1.3e-51 206.1 101 93.1
Sp1g33530 Schrenkiella parvula HOM05D007582 ORTHO05D009645 8.4e-51 203.4 101 89.1
CARHR035920 Cardamine hirsuta HOM05D007582 ORTHO05D009645 1.4e-50 202.6 101 87.1
A06p11790 Brassica napus HOM05D007582 ORTHO05D009645 4.2e-50 201.1 101 92.1
Thhalv10012348m.g Eutrema salsugineum HOM05D007582 ORTHO05D009645 5.5e-50 200.7 101 86.1
AL1G52300 Arabidopsis lyrata HOM05D007582 ORTHO05D009645 1.2e-49 199.5 102 88.2
AT1G44414 Arabidopsis thaliana HOM05D007582 ORTHO05D009645 4.6e-49 197.6 102 87.3
Carub.0001s3518 Capsella rubella HOM05D007582 ORTHO05D009645 1.4e-45 186.0 104 82.7
THA.LOC104817375 Tarenaya hassleriana HOM05D007582 ORTHO05D009645 4.0e-45 184.5 109 78.9
Aa31LG6G9350 Aethionema arabicum HOM05D007582 ORTHO05D009645 1.2e-44 183.0 104 78.8
Peaxi162Scf00051g00105 Petunia axillaris HOM05D007582 ORTHO05D009645 9.6e-39 163.3 97 74.2
Atru.chr13.1488 Acer truncatum HOM05D007582 ORTHO05D009645 2.8e-38 161.8 105 68.6
Solyc06g060300.1 Solanum lycopersicum HOM05D007582 ORTHO05D009645 2.8e-38 161.8 106 67.9
MD15G1347500 Malus domestica HOM05D007582 ORTHO05D009645 4.8e-38 161.0 110 68.2
Thecc.08G126100 Theobroma cacao HOM05D007582 ORTHO05D009645 4.8e-38 161.0 112 67.0
Manes.18G077606 Manihot esculenta HOM05D007582 ORTHO05D009645 6.3e-38 160.6 110 67.3
TWI34G1919 Tripterygium wilfordii HOM05D007582 ORTHO05D009645 8.2e-38 160.2 112 66.1
CAN.G1040.1 Capsicum annuum HOM05D007582 ORTHO05D009645 1.1e-37 159.8 108 67.6
Cpa.g.sc64.90 Carica papaya HOM05D007582 ORTHO05D009645 1.1e-37 159.8 114 66.7
Oeu028565.1 Olea europaea HOM05D007582 ORTHO05D009645 1.1e-37 159.8 113 65.5
Sopen06g020420 Solanum pennellii HOM05D007582 ORTHO05D009645 1.1e-37 159.8 106 67.0
Prupe.1G495300 Prunus persica HOM05D007582 ORTHO05D009645 2.4e-37 158.7 112 67.0
Aqoxy6G00171 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 4.1e-37 157.9 110 63.6
PGR042G2864 Punica granatum HOM05D007582 ORTHO05D009645 4.1e-37 157.9 109 65.1
QL09p034466 Quercus lobata HOM05D007582 ORTHO05D009645 4.1e-37 157.9 110 66.4
CANSAT11G2348 Cannabis sativa HOM05D007582 ORTHO05D009645 5.3e-37 157.5 109 65.1
MELO3C010615.2 Cucumis melo HOM05D007582 ORTHO05D009645 5.3e-37 157.5 112 65.2
PGSC0003DMG400041136 Solanum tuberosum HOM05D007582 ORTHO05D009645 5.3e-37 157.5 108 65.7
SalBow6G5334 Salvia bowleyana HOM05D007582 ORTHO05D009645 6.9e-37 157.1 106 65.1
CAN.G1040.3 Capsicum annuum HOM05D007582 ORTHO05D009645 9.0e-37 156.8 108 66.7
Lalb_Chr17g0343701 Lupinus albus HOM05D007582 ORTHO05D009645 9.0e-37 156.8 110 67.3
Potri.002G083100 Populus trichocarpa HOM05D007582 ORTHO05D009645 9.0e-37 156.8 114 63.2
Nitab4.5_0003719g0010 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.5e-36 156.0 111 63.1
RcHm_v2.0_Chr6g0295891 Rosa chinensis HOM05D007582 ORTHO05D009645 1.5e-36 156.0 109 67.0
Haze_00435 Corylus avellana HOM05D007582 ORTHO05D009645 2.0e-36 155.6 111 65.8
Migut.N03282 Erythranthe guttata HOM05D007582 ORTHO05D009645 2.6e-36 155.2 101 68.3
Dinv07214 Davidia involucrata HOM05D007582 ORTHO05D009645 3.4e-36 154.8 117 60.7
MSTRG.22408 Avicennia marina HOM05D007582 ORTHO05D009645 4.5e-36 154.5 107 64.5
TAR381G0802 Trochodendron aralioides HOM05D007582 ORTHO05D009645 4.5e-36 154.5 110 66.4
ClCG08G005690 Citrullus lanatus HOM05D007582 ORTHO05D009645 5.9e-36 154.1 113 62.8
FAN15G1067 Fragaria x ananassa HOM05D007582 ORTHO05D009645 5.9e-36 154.1 109 65.1
Duzib116G0545 Durio zibethinus HOM05D007582 ORTHO05D009645 1.0e-35 153.3 109 63.3
CiPaw.05G221000 Carya illinoinensis HOM05D007582 ORTHO05D009645 1.3e-35 152.9 109 66.1
Medtr1g029990 Medicago truncatula HOM05D007582 ORTHO05D009645 1.7e-35 152.5 111 64.0
Sc22g0004000 Simmondsia chinensis HOM05D007582 ORTHO05D009645 1.7e-35 152.5 110 65.5
Lj4P628T29 Lonicera japonica HOM05D007582 ORTHO05D009645 2.2e-35 152.1 108 63.0
Manes.02G163800 Manihot esculenta HOM05D007582 ORTHO05D009645 2.2e-35 152.1 110 63.6
Lj1g0018777 Lotus japonicus HOM05D007582 ORTHO05D009645 2.9e-35 151.8 111 62.2
PSO528G0093 Papaver somniferum HOM05D007582 ORTHO05D009645 6.5e-35 150.6 105 67.6
TPR.G25776 Trifolium pratense HOM05D007582 ORTHO05D009645 8.4e-35 150.2 112 59.8
SGA_v2.0_scaffold28G11996 Striga asiatica HOM05D007582 ORTHO05D009645 1.1e-34 149.8 112 61.6
PSO170G1805 Papaver somniferum HOM05D007582 ORTHO05D009645 1.9e-34 149.1 105 66.7
Hma1.2p1_0054F.1_g031010 Hydrangea macrophylla HOM05D007582 ORTHO05D009645 3.2e-34 148.3 105 62.9
Nn5g28305 Nelumbo nucifera HOM05D007582 ORTHO05D009645 3.2e-34 148.3 112 59.8
DCAR_016167 Daucus carota HOM05D007582 ORTHO05D009645 5.5e-34 147.5 101 65.3
Gohir.D06G045500 Gossypium hirsutum HOM05D007582 ORTHO05D009645 5.5e-34 147.5 102 66.7
RhsimUnG0092400 Rhododendron simsii HOM05D007582 ORTHO05D009645 7.2e-34 147.1 119 55.5
Ciclev10002916m.g Citrus clementina HOM05D007582 ORTHO05D009645 1.2e-33 146.4 107 60.7
HanXRQChr15g0465231 Helianthus annuus HOM05D007582 ORTHO05D009645 2.1e-33 145.6 104 62.5
Gorai.010G050500 Gossypium raimondii HOM05D007582 ORTHO05D009645 2.7e-33 145.2 102 65.7
vmacro00836 Vaccinium macrocarpon HOM05D007582 ORTHO05D009645 2.7e-33 145.2 118 55.1
Aqoxy6G00227 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 6.1e-33 144.1 103 61.2
CsaV3_6G034440 Cucumis sativus L. HOM05D007582 ORTHO05D009645 1.3e-32 142.9 102 61.8
Nn1g00264 Nelumbo nucifera HOM05D007582 ORTHO05D009645 1.3e-32 142.9 111 58.6
Cc10_g11990 Coffea canephora HOM05D007582 ORTHO05D009645 1.8e-32 142.5 115 55.7
CDE06G0523 Ceratophyllum demersum HOM05D007582 ORTHO05D009645 3.0e-32 141.7 112 57.1
VMungo0647G1492 Vigna mungo HOM05D007582 ORTHO05D009645 3.0e-32 141.7 110 59.1
Phvul.008G160900 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 5.1e-32 141.0 110 62.7
Phvul.008G167875 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 5.1e-32 141.0 110 62.7
CSS0038396 Camellia sinensis var. sinensis HOM05D007582 ORTHO05D009645 1.5e-31 139.4 119 55.5
Glyma.14G150500 Glycine max HOM05D007582 ORTHO05D009645 1.9e-31 139.0 115 59.1
Sed0002225 Sechium edule HOM05D007582 ORTHO05D009645 5.7e-31 137.5 114 54.4
ECA233G1368 Erigeron canadensis HOM05D007582 ORTHO05D009645 7.4e-31 137.1 98 61.2
Zm00001eb348620 Zea mays HOM05D007582 ORTHO05D009645 1.4e-29 132.9 107 57.0
HPP92_006841 Vanilla planifolia HOM05D007582 ORTHO05D009645 4.1e-29 131.3 120 51.7
Psat6g041680 Pisum sativum HOM05D007582 ORTHO05D009139 5.3e-29 131.0 96 60.4
ATR0584G060 Amborella trichopoda HOM05D007582 ORTHO05D009645 1.5e-28 129.4 114 53.5
SHI08583 Sapria himalayana HOM05D007582 ORTHO05D009645 2.6e-28 128.6 112 54.5
Gohir.A06G045000 Gossypium hirsutum HOM05D007582 ORTHO05D009645 5.9e-28 127.5 73 75.3
arahy.Tifrunner.gnm1.ann1.WSBZ3R Arachis hypogaea HOM05D007582 ORTHO05D009645 1.0e-27 126.7 94 66.0
Nn3g18690 Nelumbo nucifera HOM05D007582 ORTHO05D009645 1.3e-27 126.3 100 55.0
SMO143G0209 Selaginella moellendorffii HOM05D007582 ORTHO05D009645 2.5e-26 122.1 101 51.5
Os05g0435400 Oryza sativa ssp. japonica HOM05D007582 ORTHO05D009645 7.2e-26 120.6 113 54.0
Mapoly0085s0071 Marchantia polymorpha HOM05D007582 ORTHO05D009645 1.1e-18 96.7 121 38.8
Nitab4.5_0011334g0030 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.6e-17 92.8 73 56.2
Pp3c19_19360 Physcomitrium patens HOM05D007582 ORTHO05D009645 6.1e-17 90.9 120 38.3
Aa31LG6G9370 Aethionema arabicum HOM05D007582 ORTHO05D009645 1.3e-14 83.2 101 47.5
Nn4g24512 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.0e-12 75.9 71 50.7
Nn1g08790 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.5e-10 68.9 35 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1959 Anthoceros agrestis HOM05D007582 ORTHO05D009645 9.4e-10 67.0 64 48.4
Phvul.L001669 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 1.0e-08 63.5 42 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2461 Anthoceros agrestis HOM05D007582 ORTHO05D009645 1.8e-08 62.8 62 46.8


User provided reference genes

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