Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 2.6e-228 795.0 401 100.0
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 2.6e-228 795.0 401 100.0
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 9.9e-228 793.1 401 99.8
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 4.7e-222 774.2 400 97.8
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 4.7e-222 774.2 400 97.8
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 7.8e-217 756.9 400 95.5
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.9e-199 699.1 418 86.1
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.2e-196 689.9 400 86.5
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 5.5e-194 681.0 400 86.2
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.6e-193 677.9 426 82.2
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 6.0e-193 677.6 401 85.3
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.3e-190 669.8 399 84.5
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.4e-144 516.9 427 63.5
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 5.7e-143 511.5 431 63.3
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 5.7e-143 511.5 431 63.3
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 8.3e-142 507.7 431 63.1
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.4e-141 506.1 431 62.6
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 4.1e-141 505.4 431 61.9
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.2e-140 503.8 426 62.9
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.6e-140 503.4 432 61.3
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 4.5e-140 501.9 431 62.4
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 1.7e-139 500.0 424 62.7
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 1.7e-139 500.0 424 62.7
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.3e-139 499.6 426 62.7
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.9e-139 499.2 425 61.4
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 6.6e-139 498.0 424 62.5
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 8.6e-139 497.7 423 61.9
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.5e-138 496.9 426 62.0
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.9e-138 496.5 427 61.1
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 1.9e-138 496.5 429 62.2
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.3e-138 495.4 427 62.1
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 9.5e-138 494.2 429 61.3
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.6e-137 493.4 429 61.3
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.8e-137 492.7 420 62.6
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.0e-136 488.8 426 61.5
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 8.9e-136 487.6 432 59.7
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 1.2e-135 487.3 432 59.3
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.5e-135 486.9 431 60.6
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 3.4e-135 485.7 431 60.8
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 4.4e-135 485.3 327 73.7
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 4.4e-135 485.3 333 73.0
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 4.4e-135 485.3 431 61.7
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 5.7e-135 485.0 336 71.7
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 9.8e-135 484.2 372 67.5
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.3e-134 483.8 338 71.0
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.7e-134 483.4 430 60.0
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 1.7e-134 483.4 429 59.9
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.2e-134 483.0 328 73.2
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 1.1e-133 480.7 320 74.4
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 1.8e-133 479.9 427 61.4
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 2.4e-133 479.6 429 59.7
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.2e-133 479.2 343 71.1
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.2e-133 479.2 325 72.9
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 4.1e-133 478.8 328 72.9
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 4.1e-133 478.8 395 61.8
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 4.1e-133 478.8 427 61.1
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 5.4e-133 478.4 316 75.0
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 7.0e-133 478.0 327 72.8
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 9.2e-133 477.6 333 71.5
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 9.2e-133 477.6 325 73.2
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 1.6e-132 476.9 325 73.2
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 2.0e-132 476.5 327 72.5
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 2.0e-132 476.5 427 61.1
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 2.7e-132 476.1 434 59.7
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 5.9e-132 474.9 333 71.2
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 5.9e-132 474.9 325 72.9
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 5.9e-132 474.9 323 73.4
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 7.8e-132 474.6 355 68.5
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 7.8e-132 474.6 425 58.8
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 1.3e-131 473.8 318 73.9
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 1.3e-131 473.8 318 73.9
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.3e-131 473.8 317 73.8
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.3e-131 473.8 315 74.0
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.3e-131 473.8 315 74.0
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 1.3e-131 473.8 433 58.2
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 1.7e-131 473.4 431 59.6
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.7e-131 473.4 315 74.3
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.7e-131 473.4 318 73.3
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 2.3e-131 473.0 327 72.8
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 2.3e-131 473.0 327 72.8
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 2.3e-131 473.0 327 72.2
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 3.0e-131 472.6 327 72.2
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 3.0e-131 472.6 325 72.3
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 3.9e-131 472.2 325 71.7
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 3.9e-131 472.2 325 71.7
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.0e-131 471.9 327 71.6
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 5.0e-131 471.9 325 71.4
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 6.6e-131 471.5 327 71.9
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 8.6e-131 471.1 318 73.0
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.1e-130 470.7 325 72.0
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 1.5e-130 470.3 327 72.5
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.5e-130 470.3 325 71.4
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.5e-130 470.3 340 69.4
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 1.9e-130 469.9 346 69.7
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 2.5e-130 469.5 429 60.4
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 2.5e-130 469.5 370 65.9
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 3.3e-130 469.2 452 57.7
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 3.3e-130 469.2 424 58.0
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 7.3e-130 468.0 396 62.1
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 9.5e-130 467.6 370 65.9
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 3.6e-129 465.7 318 72.3
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.7e-129 465.3 315 73.0
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 4.7e-129 465.3 354 68.1
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-128 463.4 275 84.0
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.8e-128 463.4 335 68.1
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.3e-128 463.0 315 72.7
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 3.1e-128 462.6 315 72.7
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.1e-128 462.6 315 72.7
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 4.4e-127 458.8 315 72.4
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.3e-126 457.2 359 65.7
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 2.2e-126 456.4 340 67.6
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 4.9e-126 455.3 316 70.9
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 8.6e-123 444.5 367 62.4
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.1e-122 444.1 311 69.1
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 9.5e-122 441.0 338 65.1
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.1e-120 437.6 385 60.3
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.1e-120 437.6 344 64.2
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 1.4e-120 437.2 339 65.8
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 1.2e-119 434.1 324 68.2
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 1.2e-119 434.1 324 68.2
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.7e-118 430.3 343 64.4
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.2e-118 429.9 328 65.9
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.9e-117 426.8 325 65.8
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 2.5e-114 416.4 426 54.2
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.1e-112 411.0 316 63.9
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 1.5e-111 407.1 327 64.5
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 3.8e-110 402.5 280 72.1
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 2.6e-103 379.8 330 58.5
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.4e-101 373.2 273 66.7
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 3.9e-99 365.9 336 59.5
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 3.9e-99 365.9 275 66.5
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.1e-98 364.4 346 56.1
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 4.0e-96 355.9 347 52.7
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 2.0e-95 353.6 246 70.3
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 1.4e-93 347.4 309 56.3
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 3.9e-91 339.3 249 67.9
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 4.5e-79 299.3 222 66.2
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.0e-78 298.1 224 67.4
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 8.7e-75 285.0 263 58.9
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 5.0e-70 269.2 209 63.2
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 7.7e-63 245.4 186 61.3
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.3e-58 229.9 228 55.3
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.3e-57 228.0 197 58.9
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 2.0e-47 194.1 184 56.5
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 2.9e-46 190.3 276 40.6
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-42 178.3 123 62.6
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.5e-37 161.4 217 45.6
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.7e-36 157.1 315 34.6
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 4.4e-34 149.8 148 54.7
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 3.7e-33 146.7 138 52.9
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 7.0e-32 142.5 101 64.4
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 9.1e-32 142.1 101 63.4
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 5.9e-31 139.4 188 42.6
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 5.9e-31 139.4 104 63.5
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 9.5e-29 132.1 100 61.0
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 8.0e-28 129.0 101 57.4
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 5.2e-27 126.3 76 71.1
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 4.4e-26 123.2 100 67.0
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 1.4e-24 118.2 121 47.9
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 1.4e-24 118.2 224 35.7
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 7.0e-24 115.9 76 65.8
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.8e-22 110.2 134 50.0
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 5.0e-22 109.8 105 49.5
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.5e-21 108.2 72 75.0
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 1.5e-21 108.2 114 50.0
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 5.7e-18 96.3 74 68.9
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.7e-17 94.7 109 49.5
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 6.6e-14 82.8 96 46.9
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 9.5e-13 79.0 64 59.4
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 7.0e-08 62.8 36 83.3
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 9.2e-08 62.4 49 65.3
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 7.8e-07 59.3 59 47.5


User provided reference genes

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