Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p00010 Brassica napus HOM05D014685 ORTHO05D011865 1.2e-106 389.8 189 100.0
BraA03t11376Z Brassica rapa HOM05D014685 ORTHO05D011865 1.0e-78 297.0 184 78.3
C03p25280 Brassica napus HOM05D014685 ORTHO05D011865 6.8e-78 294.3 184 78.8
BolC3t14922H Brassica oleracea HOM05D014685 ORTHO05D011865 6.8e-78 294.3 184 78.8
BcaNung06046 Brassica carinata HOM05D014685 ORTHO05D011865 2.8e-76 288.9 142 99.3
BcaC08g42791 Brassica carinata HOM05D014685 ORTHO05D011865 8.0e-71 270.8 135 97.8
C06p00110 Brassica napus HOM05D014685 ORTHO05D011865 9.5e-64 247.3 123 99.2
A03p21410 Brassica napus HOM05D014187 ORTHO05D011865 1.2e-61 240.4 141 81.6
Thhalv10006280m.g Eutrema salsugineum HOM05D014685 ORTHO05D011865 1.3e-28 130.6 146 45.9
BcaB05g22721 Brassica carinata HOM05D014685 ORTHO05D011865 2.2e-28 129.8 113 62.8
CARHR043790 Cardamine hirsuta HOM05D001456 ORTHO05D011865 3.0e-17 92.8 178 37.1
AL7G21380 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 8.7e-17 91.3 147 36.7
CARHR216620 Cardamine hirsuta HOM05D001456 ORTHO05D011865 9.6e-16 87.8 179 32.4
AL8G40910 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 1.6e-15 87.0 144 38.9
AL7G31750 Arabidopsis lyrata HOM05D000005 ORTHO05D021399 4.8e-15 85.5 126 42.1
A06p29690 Brassica napus HOM05D019266 ORTHO05D011865 4.8e-15 85.5 111 47.7
BraA06t25916Z Brassica rapa HOM05D019266 ORTHO05D011865 4.8e-15 85.5 111 47.7
BolC9t56226H Brassica oleracea HOM05D019266 ORTHO05D011865 8.2e-15 84.7 162 35.2
AL8G41200 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 1.4e-14 84.0 145 37.9
Carub.0007s1646 Capsella rubella HOM05D001456 ORTHO05D011865 2.4e-14 83.2 147 36.1
AL8G41190 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 9.0e-14 81.3 147 36.1
Carub.0007s1746 Capsella rubella HOM05D001456 ORTHO05D011865 1.5e-13 80.5 148 36.5
BcaC04g21246 Brassica carinata HOM05D019266 ORTHO05D011865 2.0e-13 80.1 84 51.2
C09p33900 Brassica napus HOM05D019266 ORTHO05D011865 2.0e-13 80.1 84 51.2
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 4.9e-12 75.5 114 36.0
C04p36520 Brassica napus HOM05D010965 ORTHO05D024278 6.5e-12 75.1 118 39.8
BolC4t25144H Brassica oleracea HOM05D010965 ORTHO05D024278 6.5e-12 75.1 118 39.8
BcaC02g09794 Brassica carinata HOM05D010965 ORTHO05D024278 1.1e-11 74.3 118 39.0
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 1.1e-11 74.3 95 41.1
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 1.1e-11 74.3 95 41.1
AT4G30760 Arabidopsis thaliana HOM05D001456 ORTHO05D011865 1.9e-11 73.6 151 34.4
CARHR172830 Cardamine hirsuta HOM05D001456 ORTHO05D011865 1.9e-11 73.6 152 36.2
AL8G21440 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 2.5e-11 73.2 143 37.1
Carub.0007s2792 Capsella rubella HOM05D001456 ORTHO05D011865 9.3e-11 71.2 134 33.6
AL7G33110 Arabidopsis lyrata HOM05D019266 ORTHO05D011865 1.2e-10 70.9 124 35.5
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 2.7e-10 69.7 131 32.8
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 3.5e-10 69.3 172 34.9
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 3.5e-10 69.3 131 32.8
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 4.6e-10 68.9 131 32.8
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 4.6e-10 68.9 114 34.2
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 6.1e-10 68.6 131 32.1
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 7.9e-10 68.2 115 36.5
Oeu044758.1 Olea europaea HOM05D001456 ORTHO05D002799 7.9e-10 68.2 114 35.1
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 1.3e-09 67.4 98 36.7
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 1.8e-09 67.0 98 36.7
BcaC02g09041 Brassica carinata HOM05D010965 ORTHO05D016023 3.0e-09 66.2 124 31.5
BolC4t25347H Brassica oleracea HOM05D010965 ORTHO05D016023 3.0e-09 66.2 124 31.5
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 3.0e-09 66.2 124 30.6
Thhalv10014127m.g Eutrema salsugineum HOM05D007309 ORTHO05D010099 3.9e-09 65.9 146 32.2
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 5.1e-09 65.5 115 34.8
A04p05130 Brassica napus HOM05D010965 ORTHO05D016023 6.7e-09 65.1 124 30.6
BcaB02g08391 Brassica carinata HOM05D000018 ORTHO05D016023 8.7e-09 64.7 124 30.6
BcaB02g08393 Brassica carinata HOM05D010965 ORTHO05D016023 8.7e-09 64.7 124 30.6
BolC2t11370H Brassica oleracea HOM05D007309 ORTHO05D032575 8.7e-09 64.7 140 31.4
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 1.5e-08 63.9 104 35.6
A02p40630 Brassica napus HOM05D011679 ORTHO05D012451 2.5e-08 63.2 151 29.8
CARHR172850 Cardamine hirsuta HOM05D021205 ORTHO05D018443 2.5e-08 63.2 107 33.6
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 2.5e-08 63.2 98 35.7
AT3G61090 Arabidopsis thaliana HOM05D001456 ORTHO05D011781 4.3e-08 62.4 97 38.1
A02p40400 Brassica napus HOM05D011679 ORTHO05D012451 4.3e-08 62.4 124 33.9
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 4.3e-08 62.4 104 34.6
BcaC07g40423 Brassica carinata HOM05D016731 ORTHO05D011781 5.7e-08 62.0 112 33.9
A03p46830 Brassica napus HOM05D001456 ORTHO05D014991 5.7e-08 62.0 104 33.7
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 5.7e-08 62.0 104 34.6
BcaC03g17362 Brassica carinata HOM05D007309 ORTHO05D032575 7.4e-08 61.6 127 32.3
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 7.4e-08 61.6 104 33.7
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 7.4e-08 61.6 104 34.6
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 7.4e-08 61.6 104 33.7
C02p53010 Brassica napus HOM05D007309 ORTHO05D032575 7.4e-08 61.6 127 32.3
Nitab4.5_0002485g0050 Nicotiana tabacum HOM05D001456 ORTHO05D002799 9.7e-08 61.2 99 34.3
Peaxi162Scf00357g00114 Petunia axillaris HOM05D001456 ORTHO05D002799 9.7e-08 61.2 99 34.3
AL5G39260 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 1.3e-07 60.8 106 34.9
AL5G43300 Arabidopsis lyrata HOM05D001456 ORTHO05D011781 1.3e-07 60.8 97 38.1
A01p35550 Brassica napus HOM05D012545 ORTHO05D013730 1.3e-07 60.8 116 33.6
BraA01t03637Z Brassica rapa HOM05D012545 ORTHO05D013730 1.3e-07 60.8 99 37.4
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 1.3e-07 60.8 101 33.7
Manes.01G233600 Manihot esculenta HOM05D001456 ORTHO05D002799 1.6e-07 60.5 101 34.7
SEGI_28425 Sequoiadendron giganteum HOM05D001456 ORTHO05D002799 1.6e-07 60.5 90 35.6
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 1.6e-07 60.5 100 34.0
AL1G60640 Arabidopsis lyrata HOM05D025627 ORTHO05D031321 2.2e-07 60.1 103 32.0
AL5G41570 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 2.2e-07 60.1 145 31.0
A04p22460 Brassica napus HOM05D007309 ORTHO05D010099 2.2e-07 60.1 129 34.9
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 2.2e-07 60.1 104 35.6
Os07g0637200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D002799 2.2e-07 60.1 94 35.1
PGR142G0814 Punica granatum HOM05D001456 ORTHO05D002799 2.2e-07 60.1 100 35.0
ATR0796G271 Amborella trichopoda HOM05D001456 ORTHO05D002799 2.8e-07 59.7 143 30.1
A02p40520 Brassica napus HOM05D011679 ORTHO05D012451 2.8e-07 59.7 108 35.2
Aqoxy2G02522 Aquilegia oxysepala HOM05D001456 ORTHO05D002799 3.7e-07 59.3 100 33.0
CARHR167770 Cardamine hirsuta HOM05D001456 ORTHO05D011781 3.7e-07 59.3 151 29.1
Sc05g0000120 Simmondsia chinensis HOM05D001456 ORTHO05D002799 3.7e-07 59.3 100 33.0
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 4.8e-07 58.9 122 31.1
Eucgr.K00579 Eucalyptus grandis HOM05D001456 ORTHO05D002799 4.8e-07 58.9 100 35.0
Thhalv10026082m.g Eutrema salsugineum HOM05D011772 ORTHO05D010099 4.8e-07 58.9 138 30.4
Nn3g21913 Nelumbo nucifera HOM05D001456 ORTHO05D002799 4.8e-07 58.9 101 32.7
BcaB04g19904 Brassica carinata HOM05D001456 ORTHO05D002799 6.3e-07 58.5 138 31.2
A02p41490 Brassica napus HOM05D001456 ORTHO05D014991 6.3e-07 58.5 104 34.6
Hma1.2p1_0759F.1_g213950 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 6.3e-07 58.5 95 34.7
GSVIVG01031320001 Vitis vinifera HOM05D001456 ORTHO05D002799 6.3e-07 58.5 100 33.0
Dinv12091 Davidia involucrata HOM05D001456 ORTHO05D002799 8.2e-07 58.2 131 30.5
Nitab4.5_0005904g0040 Nicotiana tabacum HOM05D001456 ORTHO05D002799 8.2e-07 58.2 99 33.3
Phvul.001G222300 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 8.2e-07 58.2 104 32.7
Potri.013G003200 Populus trichocarpa HOM05D001456 ORTHO05D002799 8.2e-07 58.2 100 34.0
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 8.2e-07 58.2 101 34.7
Solyc01g101140.4 Solanum lycopersicum HOM05D001456 ORTHO05D002799 8.2e-07 58.2 99 33.3
EL10Ac8g19630 Beta vulgaris HOM05D001456 ORTHO05D002799 1.1e-06 57.8 144 29.9
BolC2t12194H Brassica oleracea HOM05D001456 ORTHO05D014991 1.1e-06 57.8 147 29.3
BraA02t09090Z Brassica rapa HOM05D001456 ORTHO05D014991 1.1e-06 57.8 104 33.7
Sabra13G0002600 Salix brachista HOM05D001456 ORTHO05D002799 1.1e-06 57.8 91 34.1
Sopen01g044590 Solanum pennellii HOM05D001456 ORTHO05D002799 1.1e-06 57.8 99 33.3
PGSC0003DMG400018288 Solanum tuberosum HOM05D001456 ORTHO05D002799 1.1e-06 57.8 99 33.3
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 1.4e-06 57.4 101 32.7
EL10As5g23613 Beta vulgaris HOM05D001456 ORTHO05D002799 1.4e-06 57.4 101 32.7
AUR62011701 Chenopodium quinoa HOM05D001456 ORTHO05D002799 1.4e-06 57.4 101 32.7
AUR62024558 Chenopodium quinoa HOM05D001456 ORTHO05D002799 1.4e-06 57.4 101 32.7
ClCG01G007140 Citrullus lanatus HOM05D001456 ORTHO05D002799 1.4e-06 57.4 101 33.7
Cc02_g35790 Coffea canephora HOM05D001456 ORTHO05D002799 1.4e-06 57.4 115 30.4
MELO3C005198.2 Cucumis melo HOM05D001456 ORTHO05D002799 1.4e-06 57.4 101 33.7
Migut.N00970 Erythranthe guttata HOM05D001456 ORTHO05D002799 1.4e-06 57.4 91 35.2
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 1.4e-06 57.4 101 33.7
Hund11630 Selenicereus undatus HOM05D001456 ORTHO05D002799 1.4e-06 57.4 101 33.7
Atru.chr5.892 Acer truncatum HOM05D001456 ORTHO05D002799 1.8e-06 57.0 104 32.7
AL3G32470 Arabidopsis lyrata HOM05D011679 ORTHO05D012451 1.8e-06 57.0 136 28.7
A07p06090 Brassica napus HOM05D014187 ORTHO05D016747 1.8e-06 57.0 102 34.3
C03p08290 Brassica napus HOM05D020281 ORTHO05D021971 1.8e-06 57.0 126 27.8
C07p03980 Brassica napus HOM05D014187 ORTHO05D016747 1.8e-06 57.0 102 34.3
CiPaw.07G124200 Carya illinoinensis HOM05D001456 ORTHO05D002799 1.8e-06 57.0 101 32.7
Hma1.2p1_3304F.1_g335090 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 1.8e-06 57.0 126 29.4
Sed0008463 Sechium edule HOM05D001456 ORTHO05D002799 1.8e-06 57.0 104 32.7
Ah.11g045840 Amaranthus hybridus HOM05D001456 ORTHO05D002799 2.4e-06 56.6 144 29.9
arahy.Tifrunner.gnm1.ann1.95CVAH Arachis hypogaea HOM05D001456 ORTHO05D002799 2.4e-06 56.6 104 32.7
arahy.Tifrunner.gnm1.ann1.XUXX3P Arachis hypogaea HOM05D001456 ORTHO05D002799 2.4e-06 56.6 104 32.7
BcaB01g06088 Brassica carinata HOM05D020281 ORTHO05D021971 2.4e-06 56.6 126 27.8
BcaC06g36465 Brassica carinata HOM05D014187 ORTHO05D016747 2.4e-06 56.6 102 34.3
C02p61420 Brassica napus HOM05D001456 ORTHO05D014991 2.4e-06 56.6 146 29.5
C06p00070 Brassica napus HOM05D014187 ORTHO05D016747 2.4e-06 56.6 102 34.3
CARHR172550 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.4e-06 56.6 100 33.0
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.4e-06 56.6 100 34.0
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 2.4e-06 56.6 104 33.7
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 2.4e-06 56.6 125 30.4
Glyma.10G143900 Glycine max HOM05D001456 ORTHO05D002799 2.4e-06 56.6 103 33.0
MBI18_g09644_MAGBIO Magnolia biondii HOM05D001456 ORTHO05D002799 2.4e-06 56.6 100 32.0
QL12p034495 Quercus lobata HOM05D001456 ORTHO05D002799 2.4e-06 56.6 100 34.0
TPR.G1642 Trifolium pratense HOM05D001456 ORTHO05D002799 2.4e-06 56.6 103 33.0
Cfa004891 Carpinus fangiana HOM05D001456 ORTHO05D002799 3.1e-06 56.2 101 33.7
AUR62030141 Chenopodium quinoa HOM05D001456 ORTHO05D002799 3.1e-06 56.2 100 33.0
Haze_05129 Corylus avellana HOM05D001456 ORTHO05D002799 3.1e-06 56.2 101 33.7
HanXRQChr09g0270991 Helianthus annuus HOM05D001456 ORTHO05D002799 3.1e-06 56.2 90 33.3
Lsat_1_v5_gn_9_77400 Lactuca sativa HOM05D001456 ORTHO05D002799 3.1e-06 56.2 90 33.3
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 3.1e-06 56.2 99 33.3
SalBow4G0536 Salvia bowleyana HOM05D001456 ORTHO05D002799 3.1e-06 56.2 100 33.0
SalBow4G1768 Salvia bowleyana HOM05D001456 ORTHO05D002799 3.1e-06 56.2 100 33.0
TAR636G1258 Trochodendron aralioides HOM05D001456 ORTHO05D002799 3.1e-06 56.2 100 34.0
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 3.1e-06 56.2 100 33.0
C06p00100 Brassica napus HOM05D014187 ORTHO05D016747 4.1e-06 55.8 102 34.3
BolC4t27378H Brassica oleracea HOM05D007309 ORTHO05D010099 4.1e-06 55.8 120 31.7
Potri.013G003000 Populus trichocarpa HOM05D001456 ORTHO05D002799 4.1e-06 55.8 94 34.0
TAR362G0556 Trochodendron aralioides HOM05D001456 ORTHO05D002799 4.1e-06 55.8 100 34.0
AL5G13820 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 5.3e-06 55.5 146 29.5
C04p37700 Brassica napus HOM05D010965 ORTHO05D016023 5.3e-06 55.5 105 31.4
C04p58600 Brassica napus HOM05D007309 ORTHO05D010099 5.3e-06 55.5 120 31.7
CiPaw.08G083900 Carya illinoinensis HOM05D001456 ORTHO05D002799 5.3e-06 55.5 115 30.4
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 5.3e-06 55.5 101 32.7
Dinv30943 Davidia involucrata HOM05D001456 ORTHO05D002799 5.3e-06 55.5 99 32.3
MD09G1292400 Malus domestica HOM05D001456 ORTHO05D002799 5.3e-06 55.5 101 33.7
PSO210G6614 Papaver somniferum HOM05D001456 ORTHO05D002799 5.3e-06 55.5 101 31.7
PSO761G0515 Papaver somniferum HOM05D001456 ORTHO05D002799 5.3e-06 55.5 101 31.7
Thecc.01G323400 Theobroma cacao HOM05D001456 ORTHO05D002799 5.3e-06 55.5 101 32.7
TWI59G0324 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 5.3e-06 55.5 100 34.0
GSVIVG01028213001 Vitis vinifera HOM05D001456 ORTHO05D002799 5.3e-06 55.5 100 32.0
C05p42720 Brassica napus HOM05D001456 ORTHO05D041427 6.9e-06 55.1 51 47.1
BolC5t32995H Brassica oleracea HOM05D001456 ORTHO05D041427 6.9e-06 55.1 51 47.1
BolC6t39204H Brassica oleracea HOM05D001456 ORTHO05D002799 6.9e-06 55.1 118 32.2
CARHR274920 Cardamine hirsuta HOM05D001456 ORTHO05D002799 6.9e-06 55.1 103 31.1
Dinv24508 Davidia involucrata HOM05D001456 ORTHO05D002799 6.9e-06 55.1 125 29.6
Glyma.19G225800 Glycine max HOM05D001456 ORTHO05D002799 6.9e-06 55.1 104 32.7
Lj9A230G20 Lonicera japonica HOM05D001456 ORTHO05D002799 6.9e-06 55.1 116 29.3
Lju99A5G39 Lonicera japonica HOM05D001456 ORTHO05D002799 6.9e-06 55.1 116 29.3
Lalb_Chr04g0260301 Lupinus albus HOM05D001456 ORTHO05D002799 6.9e-06 55.1 101 33.7
Medtr7g111570 Medicago truncatula HOM05D001456 ORTHO05D002799 6.9e-06 55.1 104 32.7
PGR031G2483 Punica granatum HOM05D001456 ORTHO05D002799 6.9e-06 55.1 104 31.7
Sabra13G0002700 Salix brachista HOM05D001456 ORTHO05D002799 6.9e-06 55.1 100 33.0
Sp2g24430 Schrenkiella parvula HOM05D001456 ORTHO05D002799 6.9e-06 55.1 90 36.7
ECA236G0747 Erigeron canadensis HOM05D001456 ORTHO05D002799 9.0e-06 54.7 90 32.2
Eucgr.H01318 Eucalyptus grandis HOM05D001456 ORTHO05D002799 9.0e-06 54.7 101 32.7
Gohir.D11G108200 Gossypium hirsutum HOM05D001456 ORTHO05D002799 9.0e-06 54.7 101 32.7
Gorai.007G116200 Gossypium raimondii HOM05D001456 ORTHO05D002799 9.0e-06 54.7 101 32.7
HanXRQChr03g0088751 Helianthus annuus HOM05D001456 ORTHO05D002799 9.0e-06 54.7 94 33.0
HanXRQChr03g0088761 Helianthus annuus HOM05D001456 ORTHO05D002799 9.0e-06 54.7 94 33.0
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 9.0e-06 54.7 99 33.3


User provided reference genes

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