Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 6.3e-61 237.3 121 100.0
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 4.5e-59 231.1 121 99.2
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.9e-57 225.7 122 96.7
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 6.1e-56 220.7 121 95.0
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 6.1e-56 220.7 121 95.0
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.5e-51 204.5 124 88.7
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.9e-49 199.1 121 82.6
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.0e-47 193.4 119 81.5
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.4e-46 188.0 126 78.6
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 8.3e-45 183.7 125 77.6
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 9.1e-44 180.3 121 79.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 9.1e-44 180.3 121 79.3
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 9.1e-44 180.3 121 79.3
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.2e-43 179.9 121 79.3
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 7.7e-43 177.2 121 80.2
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.3e-42 176.4 121 81.0
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.3e-42 176.4 121 79.3
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.2e-42 175.6 125 76.0
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 6.4e-29 131.0 122 56.6
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.3e-29 130.6 121 60.3
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.4e-28 129.8 122 58.2
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.4e-28 129.0 120 59.2
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 3.2e-28 128.6 130 59.2
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 3.0e-26 122.1 128 51.6
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 3.0e-26 122.1 128 51.6
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 5.0e-26 121.3 128 51.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.9e-25 119.4 128 50.8
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.5e-25 119.0 123 53.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 9.5e-25 117.1 119 52.9
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.7e-24 114.8 119 49.6
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 5.2e-23 111.3 101 56.4
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.6e-22 109.0 126 49.2
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.4e-22 108.2 126 49.2
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.3e-21 106.7 128 47.7
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.3e-21 106.7 97 53.6
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.3e-21 106.7 128 47.7
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.7e-21 106.3 128 46.9
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 2.2e-21 105.9 86 59.3
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.2e-21 105.9 126 48.4
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 6.4e-21 104.4 92 57.6
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 8.3e-21 104.0 130 46.2
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 8.3e-21 104.0 127 47.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 8.3e-21 104.0 119 50.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.1e-20 103.6 118 49.2
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 5.4e-20 101.3 130 46.9
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 9.2e-20 100.5 120 46.7
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.2e-19 100.1 124 50.0
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.6e-19 99.8 126 47.6
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 3.5e-19 98.6 108 50.9
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 6.0e-19 97.8 130 45.4
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 6.0e-19 97.8 131 44.3
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.8e-19 97.4 87 56.3
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.8e-19 97.4 87 55.2
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.0e-18 97.1 86 53.5
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.3e-18 96.7 123 47.2
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-18 96.3 87 52.9
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.7e-18 96.3 87 56.3
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 3.9e-18 95.1 84 56.0
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 8.6e-18 94.0 127 46.5
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 8.6e-18 94.0 129 42.6
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.1e-17 93.6 87 54.0
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.1e-17 93.6 128 42.2
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.1e-17 93.6 132 47.7
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 1.1e-17 93.6 126 42.9
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.1e-17 93.6 112 44.6
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.1e-17 93.6 125 44.8
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 2.5e-17 92.4 128 43.0
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.3e-17 91.7 110 49.1
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 5.6e-17 91.3 128 41.4
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 5.6e-17 91.3 128 41.4
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 7.3e-17 90.9 129 45.0
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 9.5e-17 90.5 137 43.8
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 9.5e-17 90.5 92 46.7
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 9.5e-17 90.5 125 40.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.6e-16 89.7 99 42.4
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.1e-16 89.4 123 51.2
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.8e-16 89.0 114 46.5
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.8e-16 89.0 88 56.8
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 3.6e-16 88.6 122 47.5
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 3.6e-16 88.6 120 46.7
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.4e-15 86.7 86 48.8
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-15 86.7 132 45.5
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.8e-15 86.3 84 54.8
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.3e-15 85.9 114 46.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.3e-15 85.9 114 46.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.3e-15 85.9 114 46.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.3e-15 85.9 114 46.5
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.3e-15 85.9 102 47.1
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.3e-15 85.9 81 53.1
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 3.1e-15 85.5 88 50.0
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 4.0e-15 85.1 97 51.5
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 5.2e-15 84.7 124 45.2
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.2e-15 84.7 112 45.5
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.2e-15 84.7 112 44.6
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 5.2e-15 84.7 107 43.9
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 6.8e-15 84.3 87 51.7
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.8e-15 84.3 85 52.9
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 6.8e-15 84.3 130 44.6
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 6.8e-15 84.3 89 52.8
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 8.9e-15 84.0 122 45.9
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-14 83.6 121 47.9
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.2e-14 83.6 112 42.9
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-14 83.6 130 44.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 1.2e-14 83.6 89 48.3
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.2e-14 83.6 123 41.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.5e-14 83.2 84 51.2
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.0e-14 82.8 101 44.6
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.0e-14 82.8 130 43.8
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.0e-14 82.8 101 52.5
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.0e-14 82.8 95 48.4
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 2.0e-14 82.8 89 51.7
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 2.6e-14 82.4 88 50.0
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 2.6e-14 82.4 88 50.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.6e-14 82.4 123 41.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 2.6e-14 82.4 84 53.6
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 2.6e-14 82.4 86 46.5
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.6e-14 82.4 116 44.0
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.4e-14 82.0 123 45.5
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 4.4e-14 81.6 83 51.8
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 7.5e-14 80.9 125 42.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 7.5e-14 80.9 125 45.6
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 7.5e-14 80.9 86 53.5
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 9.8e-14 80.5 127 42.5
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-13 80.1 83 51.8
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.3e-13 80.1 102 46.1
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 2.2e-13 79.3 124 39.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.2e-13 79.3 113 43.4
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.2e-13 79.3 83 51.8
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.2e-13 79.3 125 45.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 2.9e-13 79.0 135 42.2
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 4.9e-13 78.2 82 51.2
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.9e-13 78.2 107 43.0
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.4e-13 77.8 109 43.1
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.4e-13 77.8 82 47.6
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 6.4e-13 77.8 85 49.4
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 8.3e-13 77.4 85 49.4
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.1e-12 77.0 105 42.9
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.1e-12 77.0 93 48.4
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.4e-12 76.6 122 41.0
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.9e-12 76.3 77 48.1
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.9e-12 76.3 123 43.1
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.4e-12 75.9 87 47.1
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 4.1e-12 75.1 81 44.4
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 9.2e-12 73.9 91 45.1
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 9.2e-12 73.9 100 44.0
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.2e-11 73.6 74 45.9
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.2e-11 73.6 84 51.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.6e-11 73.2 79 48.1
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.1e-11 72.8 98 41.8
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.7e-11 72.4 111 37.8
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.7e-11 72.4 94 44.7
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 2.7e-11 72.4 95 44.2
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 3.5e-11 72.0 70 50.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.3e-10 70.1 99 37.4
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.3e-10 70.1 112 37.5
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.7e-10 69.7 96 44.8
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.3e-10 69.3 116 38.8
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.3e-10 69.3 108 35.2
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.3e-10 69.3 108 35.2
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.0e-10 68.9 106 37.7
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.1e-10 68.2 84 44.0
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 5.1e-10 68.2 106 41.5
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.6e-10 67.8 118 41.5
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 6.6e-10 67.8 89 42.7
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.6e-10 67.8 100 45.0
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 8.6e-10 67.4 81 45.7
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-09 67.0 122 44.3
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 2.5e-09 65.9 100 40.0
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 2.5e-09 65.9 98 40.8
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.3e-09 65.5 44 63.6
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.3e-09 65.1 97 39.2
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 4.3e-09 65.1 102 42.2
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 4.3e-09 65.1 102 40.2
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.3e-09 65.1 102 41.2
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.6e-08 63.2 106 36.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.1e-08 62.8 97 42.3
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.8e-08 62.4 124 40.3
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.8e-08 62.4 71 43.7
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.6e-08 62.0 99 36.4
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.6e-08 62.0 125 40.8
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.4e-07 60.1 115 36.5
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 3.1e-07 58.9 109 34.9
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 4.0e-07 58.5 95 36.8
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 6.8e-07 57.8 116 37.9
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.0e-06 56.2 74 35.1


User provided reference genes

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