Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p63630 Brassica napus HOM05D009715 ORTHO05D011857 1.7e-79 299.3 152 100.0
BraSC90t46709Z Brassica rapa HOM05D009715 ORTHO05D011857 3.0e-76 288.5 152 96.7
A05p44010 Brassica napus HOM05D009715 ORTHO05D011857 5.1e-76 287.7 152 96.1
BraA01t04588Z Brassica rapa HOM05D009715 ORTHO05D011857 5.3e-65 251.1 156 85.3
AT3G03170 Arabidopsis thaliana HOM05D009715 ORTHO05D011857 7.6e-64 247.3 157 84.7
BcaNung05520 Brassica carinata HOM05D009715 ORTHO05D011857 1.3e-63 246.5 157 86.0
AL3G12780 Arabidopsis lyrata HOM05D009715 ORTHO05D011857 9.3e-62 240.4 159 82.4
Thhalv10021675m.g Eutrema salsugineum HOM05D009715 ORTHO05D011857 9.3e-62 240.4 159 81.1
BcaC01g04409 Brassica carinata HOM05D009715 ORTHO05D011857 1.2e-61 240.0 154 83.8
C03p40500 Brassica napus HOM05D009715 ORTHO05D011857 1.2e-61 240.0 154 83.8
BolC3t16314H Brassica oleracea HOM05D009715 ORTHO05D011857 1.2e-61 240.0 154 83.8
BraA03t12496Z Brassica rapa HOM05D009715 ORTHO05D011857 6.1e-61 237.7 154 83.1
A03p33240 Brassica napus HOM05D009715 ORTHO05D011857 2.3e-60 235.7 154 82.5
BolC5t35032H Brassica oleracea HOM05D009715 ORTHO05D011857 3.9e-60 235.0 145 85.5
Carub.0003s0232 Capsella rubella HOM05D009715 ORTHO05D011857 5.3e-57 224.6 160 78.8
BcaB04g19372 Brassica carinata HOM05D009715 ORTHO05D011857 3.8e-55 218.4 154 77.3
Sp3g02210 Schrenkiella parvula HOM05D009715 ORTHO05D011857 2.1e-53 212.6 153 73.9
BcaC09g47729 Brassica carinata HOM05D009715 ORTHO05D011857 1.1e-49 200.3 156 71.2
Aa31LG5G13650 Aethionema arabicum HOM05D009715 ORTHO05D011857 1.8e-49 199.5 134 79.1
A06p26290 Brassica napus HOM05D009715 ORTHO05D011857 5.3e-49 198.0 156 70.5
BNapus_Darmor_BZH_scaffold_162p00050 Brassica napus HOM05D009715 ORTHO05D011857 5.3e-49 198.0 156 70.5
BNapus_Darmor_BZH_scaffold_78p00040 Brassica napus HOM05D009715 ORTHO05D011857 5.3e-49 198.0 156 70.5
BolC1t05842H Brassica oleracea HOM05D009715 ORTHO05D011857 5.3e-49 198.0 156 70.5
BcaC01g04404 Brassica carinata HOM05D009715 ORTHO05D011857 1.0e-47 193.7 152 70.4
CARHR077190 Cardamine hirsuta HOM05D009715 ORTHO05D011857 8.5e-47 190.7 156 69.2
THA.LOC104820871 Tarenaya hassleriana HOM05D009715 ORTHO05D011857 2.6e-40 169.1 164 64.6
BcaC05g30526 Brassica carinata HOM05D009715 ORTHO05D011857 3.6e-21 105.5 96 63.5
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 5.4e-09 65.1 40 77.5
Nitab4.5_0000091g0300 Nicotiana tabacum HOM05D002019 ORTHO05D002150 9.2e-09 64.3 39 76.9
Peaxi162Scf00521g00028 Petunia axillaris HOM05D002019 ORTHO05D002150 9.2e-09 64.3 39 76.9
PGSC0003DMG402024074 Solanum tuberosum HOM05D002019 ORTHO05D002150 9.2e-09 64.3 94 42.6
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 1.6e-08 63.5 82 43.9
ECA246G2032 Erigeron canadensis HOM05D002019 ORTHO05D002150 2.0e-08 63.2 61 52.5
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 3.5e-08 62.4 40 72.5
Hma1.2p1_0034F.1_g021470 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 3.5e-08 62.4 40 72.5
Solyc03g031890.3 Solanum lycopersicum HOM05D002019 ORTHO05D002150 5.9e-08 61.6 143 35.7
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 5.9e-08 61.6 42 69.0
HanXRQChr16g0532381 Helianthus annuus HOM05D002019 ORTHO05D002150 7.8e-08 61.2 109 43.1
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 7.8e-08 61.2 50 62.0
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 7.8e-08 61.2 40 70.0
vmacro20452 Vaccinium macrocarpon HOM05D002019 ORTHO05D002150 1.0e-07 60.8 73 49.3
Glyma.14G209000 Glycine max HOM05D002019 ORTHO05D002150 1.3e-07 60.5 59 49.2
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 1.7e-07 60.1 76 51.3
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 1.7e-07 60.1 40 65.0
Glyma.18G045200 Glycine max HOM05D002019 ORTHO05D002150 1.7e-07 60.1 40 67.5
Phvul.006G085800 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 1.7e-07 60.1 40 67.5
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 2.3e-07 59.7 68 52.9
Sopen03g005760 Solanum pennellii HOM05D002019 ORTHO05D002150 2.3e-07 59.7 143 35.0
CANSAT56G1675 Cannabis sativa HOM05D002019 ORTHO05D002150 3.0e-07 59.3 50 56.0
Medtr3g064350 Medicago truncatula HOM05D002019 ORTHO05D002150 3.0e-07 59.3 114 34.2
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 3.9e-07 58.9 77 44.2
Rhsim10G0186200 Rhododendron simsii HOM05D002019 ORTHO05D002150 3.9e-07 58.9 53 56.6
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 5.0e-07 58.5 78 51.3
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 6.6e-07 58.2 90 41.1
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 6.6e-07 58.2 39 71.8
arahy.Tifrunner.gnm1.ann1.EZ0DFJ Arachis hypogaea HOM05D002019 ORTHO05D002150 8.6e-07 57.8 77 44.2
VMungo0540G2448 Vigna mungo HOM05D002019 ORTHO05D002150 8.6e-07 57.8 40 65.0
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 1.1e-06 57.4 103 40.8
Ciclev10026542m.g Citrus clementina HOM05D002019 ORTHO05D002150 1.1e-06 57.4 106 37.7
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 1.1e-06 57.4 121 39.7
Psat5g145360 Pisum sativum HOM05D002019 ORTHO05D002150 1.1e-06 57.4 133 33.1
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 1.1e-06 57.4 91 42.9
Aqoxy7G01383 Aquilegia oxysepala HOM05D002019 ORTHO05D002150 1.9e-06 56.6 97 39.2
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 1.9e-06 56.6 81 43.2
LjContig00141g0027651 Lotus japonicus HOM05D002019 ORTHO05D002150 1.9e-06 56.6 79 46.8
TPR.G37435 Trifolium pratense HOM05D002019 ORTHO05D002150 1.9e-06 56.6 43 58.1
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 2.5e-06 56.2 34 73.5
PSO063G3878 Papaver somniferum HOM05D002019 ORTHO05D002150 2.5e-06 56.2 38 68.4
Phvul.008G241900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 2.5e-06 56.2 82 42.7
VMungo0647G2085 Vigna mungo HOM05D002019 ORTHO05D002150 2.5e-06 56.2 45 57.8
Ah.01g005730 Amaranthus hybridus HOM05D002019 ORTHO05D002150 3.3e-06 55.8 43 58.1
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 3.3e-06 55.8 40 65.0
Solyc03g121090.4 Solanum lycopersicum HOM05D002019 ORTHO05D002150 3.3e-06 55.8 67 50.7
TAR374G1288 Trochodendron aralioides HOM05D002019 ORTHO05D002150 3.3e-06 55.8 60 51.7
ATR0705G013 Amborella trichopoda HOM05D002019 ORTHO05D002150 4.3e-06 55.5 63 49.2
Dinv37969 Davidia involucrata HOM05D002019 ORTHO05D002150 4.3e-06 55.5 51 56.9
Glyma.11G208700 Glycine max HOM05D002019 ORTHO05D002150 4.3e-06 55.5 89 37.1
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 5.6e-06 55.1 40 65.0
Ca_17062_v3 Cicer arietinum L. HOM05D002019 ORTHO05D002150 5.6e-06 55.1 50 56.0
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 5.6e-06 55.1 80 42.5
Manes.04G135000 Manihot esculenta HOM05D002019 ORTHO05D002150 5.6e-06 55.1 40 60.0
Manes.11G032500 Manihot esculenta HOM05D002019 ORTHO05D002150 5.6e-06 55.1 40 60.0
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 5.6e-06 55.1 55 50.9
CAN.G1143.19 Capsicum annuum HOM05D002019 ORTHO05D002150 7.3e-06 54.7 69 50.7
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 7.3e-06 54.7 43 60.5
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 7.3e-06 54.7 43 60.5
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 7.3e-06 54.7 39 64.1
Lj6g0022787 Lotus japonicus HOM05D002019 ORTHO05D002150 7.3e-06 54.7 40 65.0
Hund00702 Selenicereus undatus HOM05D002019 ORTHO05D002150 7.3e-06 54.7 92 38.0
Sc12g0010130 Simmondsia chinensis HOM05D002019 ORTHO05D002150 7.3e-06 54.7 40 60.0
EL10Ac9g21200 Beta vulgaris HOM05D002019 ORTHO05D002150 9.5e-06 54.3 40 62.5
MBI03_g24044_MAGBIO Magnolia biondii HOM05D002019 ORTHO05D002150 9.5e-06 54.3 42 57.1
Nn8g39043 Nelumbo nucifera HOM05D002019 ORTHO05D002150 9.5e-06 54.3 40 65.0


User provided reference genes

Program Settings