Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.7e-140 502.7 254 100.0
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 2.7e-138 495.4 254 98.0
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 5.8e-133 477.6 254 94.5
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.3e-132 476.5 254 93.7
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.5e-125 453.0 255 89.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 5.5e-115 417.9 250 84.4
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.1e-107 393.7 249 79.1
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.5e-104 383.3 246 80.1
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 5.9e-101 371.3 250 77.2
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 6.5e-100 367.9 252 76.6
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 5.5e-99 364.8 249 76.3
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 6.7e-89 331.3 265 67.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 5.2e-81 305.1 246 64.2
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.5e-59 233.0 266 50.8
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.2e-58 230.7 266 50.4
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.0e-57 227.6 259 51.0
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.2e-56 224.2 253 49.8
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 7.5e-56 221.5 259 49.8
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.7e-55 220.3 265 49.1
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 3.7e-55 219.2 243 51.4
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 3.2e-54 216.1 256 50.8
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 5.4e-54 215.3 244 51.2
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.6e-53 213.8 256 49.6
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 3.5e-53 212.6 274 47.1
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 4.6e-53 212.2 260 49.2
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 4.6e-53 212.2 260 48.8
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 5.9e-53 211.8 274 46.0
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 5.9e-53 211.8 264 47.7
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.7e-52 210.3 232 50.9
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.7e-52 210.3 259 48.6
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 2.3e-52 209.9 261 48.7
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.0e-52 209.5 238 51.7
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 5.0e-52 208.8 259 46.7
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 5.0e-52 208.8 249 48.6
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 5.0e-52 208.8 252 47.6
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 5.0e-52 208.8 232 53.4
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 6.6e-52 208.4 259 47.9
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 8.6e-52 208.0 259 47.5
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.1e-51 207.6 238 51.3
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.1e-51 207.6 272 47.8
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.5e-51 207.2 233 53.6
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.3e-51 205.7 271 45.0
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 9.5e-51 204.5 262 46.2
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 9.5e-51 204.5 269 47.2
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 9.5e-51 204.5 266 45.1
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.2e-50 204.1 262 44.3
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-50 204.1 254 48.0
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.6e-50 203.8 229 51.1
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 1.6e-50 203.8 236 50.0
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.8e-50 203.0 249 49.0
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 6.2e-50 201.8 247 47.4
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 6.2e-50 201.8 293 45.1
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 8.0e-50 201.4 253 44.3
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.1e-49 199.5 270 42.6
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 3.1e-49 199.5 253 47.0
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.0e-49 199.1 232 50.9
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 6.8e-49 198.4 270 45.2
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 8.9e-49 198.0 261 46.4
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 3.4e-48 196.1 271 45.4
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 3.4e-48 196.1 257 46.7
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 7.5e-48 194.9 256 45.7
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.2e-47 193.4 298 43.3
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 8.3e-47 191.4 273 42.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.4e-46 190.7 247 44.5
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.9e-46 190.3 188 55.3
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.9e-46 190.3 188 55.3
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 5.4e-46 188.7 278 42.8
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 9.2e-46 188.0 268 42.5
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.7e-45 186.4 265 46.0
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 6.0e-45 185.3 244 43.4
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.3e-44 184.1 250 45.2
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.7e-44 183.7 266 44.7
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.5e-43 180.6 262 45.0
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.9e-43 180.3 245 42.4
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.9e-43 180.3 267 40.8
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 4.3e-43 179.1 275 41.5
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 4.3e-43 179.1 255 43.9
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 9.5e-43 177.9 188 50.0
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.1e-42 176.8 151 58.3
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 3.6e-42 176.0 262 42.4
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 4.7e-42 175.6 262 40.1
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.1e-41 174.5 150 58.7
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.3e-41 173.3 257 41.2
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 2.3e-41 173.3 270 42.6
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.1e-41 172.9 245 42.4
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.1e-41 172.9 164 56.7
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.2e-40 171.0 248 41.5
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 2.0e-40 170.2 207 48.3
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 3.4e-40 169.5 254 42.1
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 9.8e-40 167.9 257 40.5
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.7e-39 166.0 251 43.4
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 3.7e-39 166.0 194 50.0
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.2e-37 161.0 271 38.7
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.2e-37 161.0 253 41.1
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 8.6e-36 154.8 274 38.0
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 8.6e-36 154.8 274 37.6
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.9e-35 153.7 265 38.5
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.1e-34 150.2 222 41.0
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.4e-33 147.5 152 48.7
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-33 147.5 213 42.7
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.4e-33 147.5 245 39.2
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 6.8e-33 145.2 238 37.8
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-32 144.1 213 42.7
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.0e-32 143.7 257 37.7
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.6e-32 143.3 255 39.2
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 3.4e-32 142.9 244 38.1
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.4e-32 142.9 247 36.8
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.4e-32 142.9 256 37.1
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.6e-32 141.7 199 44.7
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 3.8e-31 139.4 153 47.1
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 3.8e-31 139.4 266 36.1
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 4.9e-31 139.0 262 34.0
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.4e-30 136.7 249 35.3
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.2e-30 136.3 285 33.0
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 4.1e-30 136.0 260 37.3
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 5.4e-30 135.6 247 36.0
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 9.2e-30 134.8 262 36.6
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 7.8e-29 131.7 248 35.1
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.0e-28 131.3 250 36.8
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.0e-28 131.3 250 36.8
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.1e-27 127.9 251 36.7
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 2.5e-27 126.7 256 34.0
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 3.3e-27 126.3 95 66.3
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 4.3e-27 125.9 111 60.4
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 4.0e-25 119.4 179 40.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.5e-24 117.5 155 43.2
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 2.6e-24 116.7 153 41.2
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 2.9e-23 113.2 96 62.5
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 6.0e-21 105.5 65 78.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.0e-20 104.8 196 34.7
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 5.1e-20 102.4 139 43.9
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 7.3e-19 98.6 242 31.0
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.8e-18 96.7 185 36.2
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.6e-16 90.1 215 33.5
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.7e-15 87.4 146 39.0
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 4.9e-15 85.9 84 53.6
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 6.4e-15 85.5 171 35.1
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 8.4e-15 85.1 70 64.3
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.4e-14 84.3 93 53.8
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 9.3e-14 81.6 106 46.2
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.3e-09 65.9 55 60.0


User provided reference genes

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