Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p62860 Brassica napus HOM05D004244 ORTHO05D004964 1.8e-50 202.2 98 100.0
BolC5t34941H Brassica oleracea HOM05D004244 ORTHO05D004964 2.5e-44 181.8 98 92.9
A05p43120 Brassica napus HOM05D004244 ORTHO05D004964 4.2e-31 137.9 76 86.8
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.2e-24 115.5 87 70.1
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 1.5e-23 112.8 86 70.9
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 1.5e-23 112.8 86 70.9
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 1.5e-23 112.8 86 70.9
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.5e-23 112.1 87 69.0
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 5.5e-23 110.9 85 68.2
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 9.4e-23 110.2 85 69.4
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 6.1e-22 107.5 87 66.7
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.4e-21 106.3 87 66.7
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.8e-21 105.9 87 66.7
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 5.2e-21 104.4 88 65.9
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 7.4e-20 100.5 88 61.4
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 9.4e-15 83.6 84 52.4
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 5.9e-09 64.3 92 45.7
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 1.7e-08 62.8 88 40.9
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 2.2e-08 62.4 93 40.9
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.2e-08 62.4 109 38.5
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 2.9e-08 62.0 89 39.3
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 5.0e-08 61.2 94 39.4
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 8.5e-08 60.5 100 37.0
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 1.9e-07 59.3 91 42.9
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.5e-07 58.9 86 36.0
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 3.2e-07 58.5 93 37.6
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 3.2e-07 58.5 85 38.8
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 3.2e-07 58.5 95 37.9
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.2e-07 58.2 91 40.7
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 5.5e-07 57.8 96 35.4
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 7.2e-07 57.4 95 41.1
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 7.2e-07 57.4 87 37.9
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 7.2e-07 57.4 85 38.8
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 7.2e-07 57.4 82 41.5
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 7.2e-07 57.4 81 40.7
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 9.4e-07 57.0 93 39.8
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 9.4e-07 57.0 93 39.8
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 9.4e-07 57.0 86 39.5
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.2e-06 56.6 87 36.8
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.2e-06 56.6 87 36.8
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.2e-06 56.6 91 41.8
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 1.2e-06 56.6 82 39.0
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.2e-06 56.6 82 39.0
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.6e-06 56.2 83 39.8
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.6e-06 56.2 83 41.0
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 2.7e-06 55.5 94 37.2
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.7e-06 55.5 84 41.7
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.7e-06 55.5 93 38.7
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 2.7e-06 55.5 82 39.0
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 2.7e-06 55.5 86 37.2
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 3.6e-06 55.1 89 34.8
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.6e-06 55.1 84 41.7
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 4.7e-06 54.7 87 39.1
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 6.1e-06 54.3 88 38.6
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 6.1e-06 54.3 87 40.2
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 6.1e-06 54.3 92 35.9
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 8.0e-06 53.9 92 35.9
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 8.0e-06 53.9 91 38.5
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 8.0e-06 53.9 83 37.3


User provided reference genes

Program Settings