Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30196 Brassica carinata HOM05D014993 ORTHO05D000687 5.7e-27 123.6 68 100.0
C05p62790 Brassica napus HOM05D014993 ORTHO05D000687 5.7e-27 123.6 68 100.0
BolC5t34932H Brassica oleracea HOM05D014993 ORTHO05D000687 5.7e-27 123.6 68 100.0
A05p43030 Brassica napus HOM05D014993 ORTHO05D000687 3.1e-25 117.9 68 95.6
BraA05t23047Z Brassica rapa HOM05D014993 ORTHO05D000687 3.1e-25 117.9 68 95.6
BcaC05g30224 Brassica carinata HOM05D000913 ORTHO05D000687 1.3e-18 95.9 68 77.9
BcaC06g31341 Brassica carinata HOM05D000913 ORTHO05D000687 5.5e-14 80.5 67 68.7
BcaC06g34224 Brassica carinata HOM05D014993 ORTHO05D000687 2.7e-13 78.2 67 61.2
BolC7t43691H Brassica oleracea HOM05D014993 ORTHO05D000687 2.7e-13 78.2 67 61.2
BraA06t27345Z Brassica rapa HOM05D014993 ORTHO05D000687 1.2e-11 72.8 61 62.3
BraA05t23046Z Brassica rapa HOM05D000171 ORTHO05D000101 3.4e-11 71.2 52 73.1
A05p43020 Brassica napus HOM05D000171 ORTHO05D000101 4.4e-11 70.9 51 74.5
A06p44730 Brassica napus HOM05D014993 ORTHO05D000687 9.8e-11 69.7 55 65.5
BraA05t23123Z Brassica rapa HOM05D006073 ORTHO05D007354 2.8e-10 68.2 72 54.2
Glyma.09G016400 Glycine max HOM05D000913 ORTHO05D000687 3.1e-09 64.7 68 51.5
Sp2g12500 Schrenkiella parvula HOM05D000913 ORTHO05D000687 5.4e-09 63.9 68 60.3
TPR.G10472 Trifolium pratense HOM05D000913 ORTHO05D000687 5.4e-09 63.9 67 53.7
Psat1g171760 Pisum sativum HOM05D000913 ORTHO05D000687 2.0e-08 62.0 67 52.2
Nn7g37143 Nelumbo nucifera HOM05D000913 ORTHO05D000687 4.5e-08 60.8 65 47.7
Lj6g0007781 Lotus japonicus HOM05D000913 ORTHO05D000687 5.9e-08 60.5 65 50.8
Medtr0635s0010 Medicago truncatula HOM05D000913 ORTHO05D000687 7.7e-08 60.1 67 47.8
Medtr2g027600 Medicago truncatula HOM05D000913 ORTHO05D000687 7.7e-08 60.1 67 47.8
Glyma.15G122200 Glycine max HOM05D000913 ORTHO05D000687 1.0e-07 59.7 68 50.0
CSS0028038 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 1.3e-07 59.3 68 45.6
Gohir.A07G162700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.3e-07 59.3 68 47.1
Gohir.D07G169300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.3e-07 59.3 68 47.1
Gorai.001G189300 Gossypium raimondii HOM05D000913 ORTHO05D000687 1.3e-07 59.3 68 47.1
C07p31480 Brassica napus HOM05D014993 ORTHO05D000687 2.3e-07 58.5 44 68.2
Gorai.007G164300 Gossypium raimondii HOM05D000913 ORTHO05D000687 2.9e-07 58.2 68 47.1
Phvul.006G135600 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 2.9e-07 58.2 68 47.1
Aa31LG10G410 Aethionema arabicum HOM05D011788 ORTHO05D014339 3.8e-07 57.8 59 52.5
BcaC01g01566 Brassica carinata HOM05D011788 ORTHO05D014339 3.8e-07 57.8 67 50.7
Dinv05335 Davidia involucrata HOM05D000913 ORTHO05D000687 3.8e-07 57.8 67 46.3
Gohir.D11G154200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 3.8e-07 57.8 68 45.6
Prupe.6G031100 Prunus persica HOM05D000913 ORTHO05D000687 3.8e-07 57.8 64 48.4
THA.LOC104815685 Tarenaya hassleriana HOM05D011788 ORTHO05D000687 3.8e-07 57.8 67 50.7
GSVIVG01030137001 Vitis vinifera HOM05D000913 ORTHO05D000687 3.8e-07 57.8 68 44.1
FAN25G0550 Fragaria x ananassa HOM05D000913 ORTHO05D000687 5.0e-07 57.4 67 47.8
MD03G1039100 Malus domestica HOM05D000913 ORTHO05D000687 5.0e-07 57.4 66 48.5
QL08p002131 Quercus lobata HOM05D000913 ORTHO05D000687 5.0e-07 57.4 66 48.5
Gohir.A11G147300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.6e-07 57.0 68 47.1
Gohir.D11G154000 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.6e-07 57.0 68 47.1
Gorai.007G164100 Gossypium raimondii HOM05D000913 ORTHO05D000687 6.6e-07 57.0 68 47.1
Eucgr.E04208 Eucalyptus grandis HOM05D000913 ORTHO05D000687 8.6e-07 56.6 66 50.0
Thhalv10011398m.g Eutrema salsugineum HOM05D001067 ORTHO05D000876 8.6e-07 56.6 67 49.3
Oeu049439.1 Olea europaea HOM05D000913 ORTHO05D000687 8.6e-07 56.6 66 48.5
QL05p066543 Quercus lobata HOM05D000913 ORTHO05D000687 8.6e-07 56.6 68 48.5
AT1G55775 Arabidopsis thaliana HOM05D011788 ORTHO05D014339 1.1e-06 56.2 66 48.5
MD03G1039000 Malus domestica HOM05D000913 ORTHO05D000687 1.1e-06 56.2 66 47.0
Oeu049436.1 Olea europaea HOM05D000913 ORTHO05D000687 1.1e-06 56.2 66 47.0
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 1.5e-06 55.8 68 41.2
FAN21G3003 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.5e-06 55.8 66 43.9
QL08p002158 Quercus lobata HOM05D000913 ORTHO05D000687 1.5e-06 55.8 64 48.4
A05p43860 Brassica napus HOM05D006073 ORTHO05D007354 1.9e-06 55.5 98 40.8
Ciclev10018068m.g Citrus clementina HOM05D000913 ORTHO05D000687 1.9e-06 55.5 67 44.8
Cc05_g09770 Coffea canephora HOM05D000913 ORTHO05D000687 2.5e-06 55.1 68 44.1
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 2.5e-06 55.1 67 50.7
Dinv05124 Davidia involucrata HOM05D000913 ORTHO05D000687 2.5e-06 55.1 68 48.5
Duzib138G0027 Durio zibethinus HOM05D000913 ORTHO05D000687 2.5e-06 55.1 68 44.1
Duzib138G1058 Durio zibethinus HOM05D000913 ORTHO05D000687 2.5e-06 55.1 68 44.1
FAN16G2023 Fragaria x ananassa HOM05D000913 ORTHO05D000687 2.5e-06 55.1 66 43.9
Hma1.2p1_0048F.1_g028140 Hydrangea macrophylla HOM05D000913 ORTHO05D000687 2.5e-06 55.1 67 44.8
Lalb_Chr18g0057461 Lupinus albus HOM05D000913 ORTHO05D000687 2.5e-06 55.1 68 45.6
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.5e-06 55.1 66 45.5
Cc05_g09760 Coffea canephora HOM05D000913 ORTHO05D000687 3.3e-06 54.7 68 44.1
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 3.3e-06 54.7 67 49.3
Duzib138G1006 Durio zibethinus HOM05D000913 ORTHO05D000687 3.3e-06 54.7 68 42.6
Duzib138G1373 Durio zibethinus HOM05D000913 ORTHO05D000687 3.3e-06 54.7 68 44.1
Duzib138G1828 Durio zibethinus HOM05D000913 ORTHO05D000687 3.3e-06 54.7 68 44.1
QL05p066539 Quercus lobata HOM05D000913 ORTHO05D000687 3.3e-06 54.7 68 47.1
vmacro12046 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 3.3e-06 54.7 67 43.3
vmacro17374 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 3.3e-06 54.7 67 43.3
Actinidia12346 Actinidia chinensis HOM05D000913 ORTHO05D000687 4.2e-06 54.3 68 41.2
Cfa004620 Carpinus fangiana HOM05D000913 ORTHO05D000687 4.2e-06 54.3 66 40.9
Potri.001G468500 Populus trichocarpa HOM05D000913 ORTHO05D000687 4.2e-06 54.3 66 47.0
Sp1g41360 Schrenkiella parvula HOM05D001067 ORTHO05D000876 4.2e-06 54.3 67 47.8
Haze_10216 Corylus avellana HOM05D000913 ORTHO05D000687 5.5e-06 53.9 66 40.9
Gohir.D08G019300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 5.5e-06 53.9 68 45.6
Prupe.6G031000 Prunus persica HOM05D000913 ORTHO05D000687 5.5e-06 53.9 66 42.4
Sabra16G0317700 Salix brachista HOM05D000913 ORTHO05D000687 5.5e-06 53.9 61 52.5
vmacro12049 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 5.5e-06 53.9 67 41.8
VMungo0540G1757 Vigna mungo HOM05D002133 ORTHO05D000687 5.5e-06 53.9 68 45.6
C03p93210 Brassica napus HOM05D011788 ORTHO05D014339 7.2e-06 53.5 58 50.0
BolC3t21619H Brassica oleracea HOM05D011788 ORTHO05D014339 7.2e-06 53.5 58 50.0
Cpa.g.sc136.67 Carica papaya HOM05D000913 ORTHO05D000687 7.2e-06 53.5 67 44.8
Ca_27958_v3 Cicer arietinum L. HOM05D000913 ORTHO05D000687 7.2e-06 53.5 67 44.8
MD11G1039300 Malus domestica HOM05D000913 ORTHO05D000687 7.2e-06 53.5 66 43.9
Potri.016G002600 Populus trichocarpa HOM05D000913 ORTHO05D000687 7.2e-06 53.5 62 50.0
Prupe.6G030500 Prunus persica HOM05D000913 ORTHO05D000687 7.2e-06 53.5 66 45.5
QL05p066534 Quercus lobata HOM05D000913 ORTHO05D000687 7.2e-06 53.5 66 45.5
Aqoxy5G03820 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 9.5e-06 53.1 68 47.1
MSTRG.15033 Avicennia marina HOM05D000913 ORTHO05D000687 9.5e-06 53.1 66 45.5
CANSAT56G2010 Cannabis sativa HOM05D000913 ORTHO05D000687 9.5e-06 53.1 69 44.9
CiPaw.10G022600 Carya illinoinensis HOM05D000913 ORTHO05D000687 9.5e-06 53.1 62 45.2
MD10G1233100 Malus domestica HOM05D000913 ORTHO05D000687 9.5e-06 53.1 67 43.3
Prupe.6G030900 Prunus persica HOM05D000913 ORTHO05D000687 9.5e-06 53.1 66 42.4
Thecc.01G201000 Theobroma cacao HOM05D000913 ORTHO05D000687 9.5e-06 53.1 68 41.2


User provided reference genes

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