Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 0.0e+00 1409.0 711 100.0
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 0.0e+00 1387.9 711 98.0
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1360.1 714 97.2
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 0.0e+00 1328.2 715 94.0
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 0.0e+00 1324.3 719 93.6
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1303.1 708 94.5
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1293.1 720 91.7
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 0.0e+00 1258.8 721 89.6
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1252.7 724 89.0
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 0.0e+00 1244.2 724 88.7
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 0.0e+00 1241.5 723 88.0
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 0.0e+00 1238.8 723 87.0
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1231.9 725 87.6
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 0.0e+00 1231.9 725 87.6
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 0.0e+00 1207.6 731 86.0
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 0.0e+00 1196.8 721 85.2
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 0.0e+00 1194.1 722 84.5
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 0.0e+00 1191.8 723 84.5
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 0.0e+00 1145.2 743 80.3
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 0.0e+00 1075.5 730 75.1
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 5.5e-274 947.6 744 65.3
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.3e-272 942.2 744 65.3
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 3.0e-272 941.8 744 65.2
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 6.3e-270 934.1 745 64.8
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.6e-268 929.5 746 65.1
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 4.5e-268 927.9 741 64.5
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 1.5e-266 922.9 743 63.7
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 3.3e-266 921.8 542 86.7
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 4.3e-266 921.4 745 63.2
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 4.9e-262 907.9 745 62.8
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 2.4e-261 905.6 748 62.8
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 7.0e-261 904.0 744 62.9
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 1.0e-259 900.2 744 62.1
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.1e-258 896.7 738 62.7
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 9.5e-258 893.6 757 61.2
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 8.0e-257 890.6 744 61.7
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 3.7e-254 881.7 741 62.3
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 6.4e-254 880.9 742 61.9
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 1.4e-253 879.8 735 61.2
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 2.4e-253 879.0 660 67.9
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 9.2e-253 877.1 739 61.3
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 3.5e-252 875.2 745 60.8
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 1.3e-251 873.2 734 60.2
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 6.6e-251 870.9 746 60.5
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.2e-249 866.7 737 60.7
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 6.2e-249 864.4 734 59.9
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 2.3e-248 862.4 740 62.0
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 1.2e-247 860.1 733 60.4
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 1.2e-247 860.1 740 62.0
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 5.8e-247 857.8 747 60.8
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 5.8e-247 857.8 720 61.8
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 2.2e-246 855.9 742 59.6
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 2.9e-246 855.5 746 59.7
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 7.1e-245 850.9 744 59.7
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 9.2e-245 850.5 742 59.3
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 1.2e-244 850.1 775 57.2
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.6e-244 849.7 765 59.9
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 2.1e-244 849.4 737 59.2
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 2.1e-244 849.4 744 61.2
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 2.1e-244 849.4 738 61.0
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 4.6e-244 848.2 740 58.9
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 6.0e-244 847.8 830 56.5
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 1.0e-243 847.0 742 61.1
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 4.3e-242 841.6 745 59.2
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 6.2e-241 837.8 721 59.5
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.4e-240 836.6 606 69.8
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 1.2e-239 833.6 730 58.9
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.2e-239 833.6 743 58.8
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 9.9e-239 830.5 747 59.3
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 6.4e-238 827.8 748 57.6
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 4.2e-237 825.1 744 59.0
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.1e-237 824.3 771 56.2
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.8e-236 820.8 769 56.0
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.3e-235 819.3 745 57.9
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 6.6e-235 817.8 772 57.5
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.5e-234 816.6 772 55.8
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 4.8e-233 811.6 731 58.8
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 1.5e-231 806.6 754 57.6
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 7.6e-231 804.3 672 62.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.9e-230 802.4 757 56.1
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 4.9e-230 801.6 670 62.2
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 1.4e-229 800.0 799 54.2
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 5.4e-229 798.1 768 55.6
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 2.1e-228 796.2 743 57.5
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 2.7e-228 795.8 669 62.0
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.1e-226 790.4 667 61.8
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 6.9e-224 781.2 822 53.0
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 7.6e-223 777.7 660 61.1
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.8e-219 766.5 736 55.8
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 1.3e-217 760.4 734 57.4
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 7.6e-215 751.1 737 55.1
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 2.7e-212 742.7 669 57.7
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 5.8e-207 724.9 657 57.4
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 6.5e-206 721.5 762 53.1
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 3.5e-204 715.7 752 52.9
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 2.3e-203 713.0 650 56.5
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 2.5e-202 709.5 809 50.7
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 3.1e-200 702.6 571 66.0
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 3.4e-199 699.1 738 51.9
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 8.2e-193 677.9 744 51.9
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.1e-192 677.6 737 51.7
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.3e-190 670.6 746 50.9
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 2.9e-190 669.5 722 50.8
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 3.0e-179 632.9 614 55.7
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 2.5e-173 613.2 616 54.7
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 4.7e-172 609.0 745 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.8e-171 607.1 781 47.1
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 2.8e-169 599.7 578 55.4
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.4e-163 580.9 731 47.9
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 9.8e-162 574.7 934 40.1
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 5.9e-159 565.5 628 51.1
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 7.3e-157 558.5 605 50.9
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 3.2e-152 543.1 533 55.0
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 9.2e-152 541.6 609 50.4
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 3.9e-142 509.6 645 48.7
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.7e-129 467.6 393 61.3
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 1.9e-128 464.2 526 48.5
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.8e-107 394.4 393 52.4
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 2.0e-90 337.8 654 35.3
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 3.6e-87 327.0 334 53.0
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 2.0e-77 294.7 617 34.2
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 1.3e-76 292.0 703 31.2
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.7e-58 231.1 373 38.6
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.3e-52 212.2 228 49.1
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.3e-52 212.2 228 49.1
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.2e-50 205.7 573 31.8
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 4.2e-48 197.2 161 64.0
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 1.0e-41 176.0 102 88.2
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.6e-39 167.5 146 58.2
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 3.4e-37 161.0 162 52.5
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 1.6e-34 152.1 181 43.1
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 2.3e-33 148.3 77 89.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 3.9e-33 147.5 77 88.3
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 6.2e-31 140.2 77 84.4
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 8.6e-25 119.8 63 92.1
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 3.2e-19 101.3 191 42.9
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-19 100.9 171 39.8
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 8.6e-17 93.2 99 44.4
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 3.3e-16 91.3 64 78.1
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 3.3e-16 91.3 64 78.1
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 1.4e-14 85.9 50 76.0
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 4.0e-14 84.3 62 61.3
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.0e-09 69.7 78 47.4
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 2.3e-09 68.6 72 54.2
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 3.3e-08 64.7 56 57.1
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 5.2e-06 57.4 63 49.2


User provided reference genes

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