Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 1.1e-201 706.4 378 100.0
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 1.4e-199 699.5 378 98.7
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.2e-195 686.4 380 97.1
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 1.4e-183 646.4 397 90.2
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 3.1e-183 645.2 397 90.2
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 7.5e-169 597.4 393 84.0
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 4.3e-164 581.6 398 79.4
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 2.3e-157 559.3 396 77.5
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.8e-155 552.4 392 70.9
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 2.6e-153 545.8 381 77.2
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 1.9e-151 539.7 381 71.7
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 7.0e-151 537.7 381 71.7
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 9.2e-151 537.3 381 71.4
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 1.6e-150 536.6 381 71.1
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 1.6e-150 536.6 381 71.1
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 6.0e-150 534.6 383 75.7
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 6.6e-149 531.2 377 76.1
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 1.6e-147 526.6 381 71.4
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 2.8e-147 525.8 379 74.1
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.6e-142 510.0 382 72.8
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 2.5e-140 502.7 372 69.1
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 4.7e-139 498.4 382 65.4
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 8.1e-139 497.7 394 62.9
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 1.4e-138 496.9 394 62.7
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 3.1e-138 495.7 381 66.7
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 4.4e-137 491.9 381 66.1
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 5.8e-137 491.5 382 70.4
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 3.2e-135 485.7 391 63.4
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 3.2e-135 485.7 381 64.3
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 2.1e-134 483.0 382 63.4
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 2.7e-134 482.6 391 63.2
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 1.3e-133 480.3 397 61.0
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 8.6e-133 477.6 385 63.9
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 2.5e-132 476.1 379 66.2
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 5.6e-132 474.9 382 68.1
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 1.2e-131 473.8 386 61.9
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 2.8e-131 472.6 381 61.9
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 4.7e-131 471.9 381 61.9
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 8.1e-131 471.1 359 69.9
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 1.4e-130 470.3 381 63.5
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.8e-130 469.9 385 64.9
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.4e-130 469.5 387 65.6
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 2.4e-130 469.5 382 62.3
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 2.4e-130 469.5 381 61.9
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 4.0e-130 468.8 381 63.3
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 4.0e-130 468.8 386 60.9
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 8.9e-130 467.6 382 62.0
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 2.6e-129 466.1 409 59.2
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 2.6e-129 466.1 380 61.1
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 3.4e-129 465.7 382 61.5
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 4.4e-129 465.3 382 61.8
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 7.6e-129 464.5 381 61.4
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 1.7e-128 463.4 381 64.0
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.7e-128 463.4 382 61.5
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 1.7e-128 463.4 382 62.0
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 1.7e-128 463.4 381 61.2
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 2.2e-128 463.0 381 60.4
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 2.2e-128 463.0 394 66.0
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.9e-127 459.9 388 60.6
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 4.2e-127 458.8 398 65.3
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 4.2e-127 458.8 393 60.1
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 7.1e-127 458.0 381 65.9
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 9.3e-127 457.6 381 61.4
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 1.2e-126 457.2 381 59.8
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 1.2e-126 457.2 458 54.8
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.6e-126 456.8 429 61.5
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 7.8e-126 454.5 381 65.9
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 1.7e-125 453.4 382 62.0
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 1.1e-124 450.7 383 59.0
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 1.5e-124 450.3 382 59.7
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 4.3e-124 448.7 383 58.2
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 5.6e-124 448.4 359 61.3
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 5.6e-124 448.4 381 58.5
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 9.6e-124 447.6 381 60.4
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 9.6e-124 447.6 395 58.5
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.1e-123 446.4 382 60.5
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 3.6e-123 445.7 382 59.2
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 6.2e-123 444.9 387 58.7
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 5.3e-122 441.8 382 60.2
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 1.3e-120 437.2 382 58.4
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 2.2e-120 436.4 337 64.4
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 1.6e-118 430.3 382 54.7
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 3.5e-118 429.1 385 56.4
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 6.0e-118 428.3 301 68.8
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 3.9e-117 425.6 314 79.3
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 1.5e-116 423.7 379 57.0
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 1.3e-115 420.6 313 79.2
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 1.6e-115 420.2 330 69.4
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 6.9e-114 414.8 316 77.2
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 1.7e-112 410.2 388 53.9
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.1e-107 393.3 389 54.8
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 1.1e-106 391.0 285 74.7
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 1.8e-106 390.2 314 62.7
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 3.1e-106 389.4 301 65.1
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 1.3e-104 384.0 363 55.9
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 2.2e-104 383.3 381 52.2
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.6e-102 377.1 383 52.0
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 4.6e-102 375.6 255 69.8
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 7.4e-100 368.2 262 83.6
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 1.3e-99 367.5 382 56.8
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 1.6e-99 367.1 376 52.1
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 1.8e-98 363.6 255 74.5
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 2.4e-98 363.2 319 57.4
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 1.2e-97 360.9 255 74.5
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 3.0e-93 346.3 470 44.3
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 1.1e-92 344.4 368 51.9
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 1.2e-89 334.3 330 59.1
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 9.7e-84 314.7 336 52.7
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 1.4e-82 310.8 275 57.8
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.5e-76 290.8 299 51.8
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 7.4e-76 288.5 390 43.6
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 1.1e-74 284.6 321 46.1
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 4.8e-67 259.2 208 61.5
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 1.1e-58 231.5 297 44.1
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 3.8e-56 223.0 256 52.0
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 2.5e-55 220.3 311 47.3
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 1.4e-53 214.5 294 48.3
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 5.0e-48 196.1 178 59.0
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 1.4e-45 188.0 206 42.7
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 3.1e-37 160.2 149 56.4
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 7.5e-36 155.6 110 70.0
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 3.0e-32 143.7 291 34.7
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 7.3e-31 139.0 83 83.1
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 9.5e-31 138.7 83 81.9
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 9.5e-31 138.7 83 81.9
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.2e-30 138.3 132 55.3
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 2.9e-27 127.1 146 47.9
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 1.4e-26 124.8 141 49.6
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 1.2e-25 121.7 142 48.6
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 2.7e-25 120.6 149 47.0
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.7e-24 117.9 81 64.2
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 8.6e-24 115.5 81 63.0
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 9.5e-23 112.1 63 85.7
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 9.5e-23 112.1 282 27.3
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 2.8e-22 110.5 89 64.0
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 8.4e-19 99.0 58 79.3
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 2.1e-17 94.4 383 25.6
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 4.6e-09 66.6 131 36.6
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 9.6e-07 58.9 42 52.4
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.3e-06 58.5 42 54.8
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 1.3e-06 58.5 42 54.8
arahy.Tifrunner.gnm1.ann1.J0URVC Arachis hypogaea HOM05D010413 ORTHO05D014444 1.3e-06 58.5 41 56.1
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.1e-06 57.8 41 56.1
arahy.Tifrunner.gnm1.ann1.M9QEPL Arachis hypogaea HOM05D010413 ORTHO05D002299 3.6e-06 57.0 42 52.4


User provided reference genes

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