Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p60400 Brassica napus HOM05D010738 ORTHO05D012790 2.0e-64 248.8 116 100.0
BolC5t34686H Brassica oleracea HOM05D010738 ORTHO05D012790 5.8e-64 247.3 116 99.1
C05p60410 Brassica napus HOM05D010738 ORTHO05D012790 1.2e-32 143.3 70 91.4
BolC5t34687H Brassica oleracea HOM05D010738 ORTHO05D012790 1.2e-32 143.3 70 91.4
A05p41200 Brassica napus HOM05D010738 ORTHO05D012790 1.5e-32 142.9 70 90.0
BraSC294t45957Z Brassica rapa HOM05D010738 ORTHO05D012790 1.3e-31 139.8 70 88.6
A05p41190 Brassica napus HOM05D010738 ORTHO05D012790 6.1e-29 131.0 65 89.2
Thhalv10015626m.g Eutrema salsugineum HOM05D010738 ORTHO05D012790 6.3e-26 120.9 70 71.4
AT3G06985 Arabidopsis thaliana HOM05D010738 ORTHO05D012790 7.2e-22 107.5 70 65.7
Thhalv10015992m.g Eutrema salsugineum HOM05D010738 ORTHO05D012790 1.2e-19 100.1 68 58.8
BcaC05g29830 Brassica carinata HOM05D002889 ORTHO05D012790 3.7e-18 95.1 45 100.0
Carub.0003s0652 Capsella rubella HOM05D010738 ORTHO05D012790 6.3e-18 94.4 72 61.1
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 2.7e-16 89.0 43 97.7
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 2.7e-16 89.0 43 97.7
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 2.7e-16 89.0 43 97.7
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 2.7e-16 89.0 43 97.7
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 2.7e-16 89.0 43 97.7
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 2.7e-16 89.0 43 97.7
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 2.7e-16 89.0 43 97.7
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 3.5e-16 88.6 43 95.3
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Actinidia37572 Actinidia chinensis HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 5.9e-16 87.8 43 95.3
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 7.7e-16 87.4 43 93.0
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 7.7e-16 87.4 43 95.3
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 7.7e-16 87.4 43 93.0
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 7.7e-16 87.4 43 93.0
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 1.0e-15 87.0 43 95.3
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 1.0e-15 87.0 43 95.3
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 1.0e-15 87.0 43 95.3
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 1.0e-15 87.0 43 95.3
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 1.0e-15 87.0 43 95.3
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 1.0e-15 87.0 43 95.3
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 1.0e-15 87.0 43 95.3
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 1.0e-15 87.0 43 95.3
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
EL10Ac7g17764 Beta vulgaris HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Nitab4.5_0004779g0010 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
GSVIVG01028494001 Vitis vinifera HOM05D002889 ORTHO05D003366 1.3e-15 86.7 43 93.0
Lj1A81T56 Lonicera japonica HOM05D002889 ORTHO05D003366 1.7e-15 86.3 43 93.0
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 1.7e-15 86.3 43 90.7
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 2.2e-15 85.9 43 90.7
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 2.2e-15 85.9 43 93.0
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 2.2e-15 85.9 43 93.0
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 2.2e-15 85.9 43 93.0
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 2.2e-15 85.9 43 93.0
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 2.2e-15 85.9 43 93.0
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
CAN.G154.1 Capsicum annuum HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 93.0
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 93.0
Dinv19240 Davidia involucrata HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Oeu015915.1 Olea europaea HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Psat3g050120 Pisum sativum HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 90.7
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 2.9e-15 85.5 43 93.0
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 3.8e-15 85.1 43 93.0
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 3.8e-15 85.1 43 90.7
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 3.8e-15 85.1 43 93.0
CDE02G1653 Ceratophyllum demersum HOM05D002889 ORTHO05D002017 3.8e-15 85.1 43 90.7
CDE08G0296 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 3.8e-15 85.1 43 90.7
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 3.8e-15 85.1 43 90.7
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 3.8e-15 85.1 43 90.7
TWI59G1284 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 3.8e-15 85.1 43 93.0
AL3G18210 Arabidopsis lyrata HOM05D010738 ORTHO05D012790 5.0e-15 84.7 70 54.3
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 93.0
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 93.0
CDE09G0034 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 88.4
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 93.0
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 88.4
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 88.4
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 88.4
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 88.4
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 5.0e-15 84.7 43 90.7
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 6.5e-15 84.3 43 90.7
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 8.5e-15 84.0 43 88.4
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 1.1e-14 83.6 42 90.5
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 2.5e-14 82.4 43 88.4
vmacro14772 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 2.5e-14 82.4 43 88.4
AL3G18170 Arabidopsis lyrata HOM05D010738 ORTHO05D012790 3.2e-14 82.0 65 55.4
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 3.2e-14 82.0 43 88.4
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 3.2e-14 82.0 43 88.4
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 3.2e-14 82.0 43 88.4
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 5.5e-14 81.3 43 83.7
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 7.2e-14 80.9 43 86.0
HPP92_027294 Vanilla planifolia HOM05D002889 ORTHO05D003366 7.2e-14 80.9 43 83.7
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 9.4e-14 80.5 43 86.0
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 1.2e-13 80.1 42 88.1
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 1.6e-13 79.7 52 76.9
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 1.6e-13 79.7 43 86.0
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 1.6e-13 79.7 43 86.0
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 3.6e-13 78.6 43 83.7
AT3G07005 Arabidopsis thaliana HOM05D010738 ORTHO05D012790 4.7e-13 78.2 73 53.4
CARHR098280 Cardamine hirsuta HOM05D010738 ORTHO05D012790 4.7e-13 78.2 73 47.9
SEGI_17570 Sequoiadendron giganteum HOM05D002889 ORTHO05D003366 4.7e-13 78.2 43 83.7
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 2.3e-12 75.9 43 79.1
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 2.3e-12 75.9 43 79.1
SMO358G0024 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 2.3e-12 75.9 43 79.1
BNapus_Darmor_BZH_scaffold_109p00300 Brassica napus HOM05D010738 ORTHO05D012790 5.2e-12 74.7 67 52.2
BraA01t04404Z Brassica rapa HOM05D010738 ORTHO05D012790 5.2e-12 74.7 67 52.2
CARHR052320 Cardamine hirsuta HOM05D010738 ORTHO05D012790 6.8e-12 74.3 69 47.8
SMO271G0072 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 8.8e-12 73.9 43 76.7
Duzib212G0822 Durio zibethinus HOM05D002889 ORTHO05D003366 1.2e-11 73.6 42 76.2
Thecc.04G215400 Theobroma cacao HOM05D002889 ORTHO05D003366 1.2e-11 73.6 42 76.2
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 2.0e-11 72.8 71 57.7
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 2.6e-11 72.4 42 76.2
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 2.6e-11 72.4 42 76.2
BolC1t05575H Brassica oleracea HOM05D010738 ORTHO05D012790 4.4e-11 71.6 67 50.7
Gohir.A09G053900 Gossypium hirsutum HOM05D002889 ORTHO05D003366 7.5e-11 70.9 42 76.2
Gohir.D09G053074 Gossypium hirsutum HOM05D002889 ORTHO05D003366 7.5e-11 70.9 42 76.2
Gorai.006G054600 Gossypium raimondii HOM05D002889 ORTHO05D003366 7.5e-11 70.9 42 76.2
AagrBONN_evm.TU.Sc2ySwM_344.3269 Anthoceros agrestis HOM05D002889 ORTHO05D003366 2.2e-10 69.3 43 72.1
EL10Ac7g17766 Beta vulgaris HOM05D002889 ORTHO05D003366 2.8e-10 68.9 33 97.0
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 1.4e-09 66.6 34 91.2
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 3.1e-09 65.5 77 50.6
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 8.6e-07 57.4 29 89.7
Os02g0816300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 2.5e-06 55.8 62 46.8


User provided reference genes

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