Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p60080 Brassica napus HOM05D003330 ORTHO05D003805 8.6e-63 243.4 118 100.0
BolC5t34661H Brassica oleracea HOM05D003330 ORTHO05D003805 8.6e-63 243.4 118 100.0
BcaC05g29742 Brassica carinata HOM05D003330 ORTHO05D003805 4.0e-44 181.4 147 66.7
A05p40950 Brassica napus HOM05D003330 ORTHO05D003805 9.8e-43 176.8 150 61.3
A05p40970 Brassica napus HOM05D003330 ORTHO05D003805 1.3e-42 176.4 141 70.2
BcaC05g29852 Brassica carinata HOM05D003330 ORTHO05D003805 1.1e-41 173.3 141 69.5
C05p60090 Brassica napus HOM05D003330 ORTHO05D003805 1.1e-41 173.3 141 69.5
BolC5t34662H Brassica oleracea HOM05D003330 ORTHO05D003805 1.1e-41 173.3 141 69.5
AL3G18570 Arabidopsis lyrata HOM05D003330 ORTHO05D003805 2.3e-39 165.6 149 62.4
Carub.0003s0680 Capsella rubella HOM05D003330 ORTHO05D003805 3.3e-38 161.8 150 62.0
Thhalv10020678m.g Eutrema salsugineum HOM05D003330 ORTHO05D003805 4.3e-38 161.4 150 63.3
Sp3g06200 Schrenkiella parvula HOM05D003330 ORTHO05D003805 5.6e-38 161.0 151 62.3
AT3G07270 Arabidopsis thaliana HOM05D003330 ORTHO05D003805 1.2e-37 159.8 149 63.1
CARHR081920 Cardamine hirsuta HOM05D003330 ORTHO05D003805 4.7e-37 157.9 151 61.6
BraA01t04390Z Brassica rapa HOM05D003330 ORTHO05D003805 2.3e-36 155.6 151 57.0
BNapus_Darmor_BZH_scaffold_109p00160 Brassica napus HOM05D003330 ORTHO05D003805 5.2e-36 154.5 151 58.3
THA.LOC104822486 Tarenaya hassleriana HOM05D003330 ORTHO05D003805 1.5e-35 152.9 151 59.6
BolC1t05562H Brassica oleracea HOM05D003330 ORTHO05D003805 3.8e-34 148.3 144 59.0
THA.LOC104818979 Tarenaya hassleriana HOM05D003330 ORTHO05D003805 7.1e-33 144.1 153 56.9
Aa31LG5G17840 Aethionema arabicum HOM05D003330 ORTHO05D003805 1.1e-30 136.7 146 55.5
Thhalv10004230m.g Eutrema salsugineum HOM05D003330 ORTHO05D003805 1.1e-30 136.7 144 57.6
C02p56690 Brassica napus HOM05D003330 ORTHO05D003805 3.3e-30 135.2 140 57.1
A02p37600 Brassica napus HOM05D003330 ORTHO05D003805 1.6e-29 132.9 142 53.5
BcaC03g17663 Brassica carinata HOM05D003330 ORTHO05D003805 2.1e-29 132.5 140 55.0
BolC2t11730H Brassica oleracea HOM05D003330 ORTHO05D003805 2.1e-29 132.5 140 55.7
Sp2g18970 Schrenkiella parvula HOM05D003330 ORTHO05D003805 4.7e-29 131.3 142 55.6
BcaB04g21319 Brassica carinata HOM05D003330 ORTHO05D003805 2.4e-28 129.0 146 54.8
BraA02t08744Z Brassica rapa HOM05D003330 ORTHO05D003805 2.4e-28 129.0 142 54.9
Hma1.2p1_0226F.1_g095240 Hydrangea macrophylla HOM05D003330 ORTHO05D003805 2.6e-27 125.6 146 53.4
BcaB07g30035 Brassica carinata HOM05D003330 ORTHO05D003805 7.6e-27 124.0 143 52.4
CANSAT01G2062 Cannabis sativa HOM05D003330 ORTHO05D003805 7.6e-27 124.0 158 49.4
CiPaw.14G040100 Carya illinoinensis HOM05D003330 ORTHO05D003805 7.6e-27 124.0 152 49.3
Gohir.A07G198600 Gossypium hirsutum HOM05D003330 ORTHO05D003805 1.3e-26 123.2 164 48.2
VMungo0331G0963 Vigna mungo HOM05D003330 ORTHO05D003805 3.8e-26 121.7 160 46.2
Ciclev10020030m.g Citrus clementina HOM05D003330 ORTHO05D003805 1.1e-25 120.2 154 48.7
MD10G1157600 Malus domestica HOM05D003330 ORTHO05D003805 1.1e-25 120.2 154 51.3
Ah.08g214760 Amaranthus hybridus HOM05D003330 ORTHO05D003805 2.4e-25 119.0 148 48.6
Duzib211G0662 Durio zibethinus HOM05D003330 ORTHO05D003805 2.4e-25 119.0 164 47.6
Sc17g0002010 Simmondsia chinensis HOM05D003330 ORTHO05D003805 4.2e-25 118.2 155 45.8
Glyma.03G085500 Glycine max HOM05D003330 ORTHO05D003805 5.4e-25 117.9 151 46.4
Psat4g204360 Pisum sativum HOM05D003330 ORTHO05D003805 5.4e-25 117.9 155 45.8
Hund18440 Selenicereus undatus HOM05D003330 ORTHO05D003805 5.4e-25 117.9 160 46.2
Duzib138G0157 Durio zibethinus HOM05D003330 ORTHO05D003805 7.1e-25 117.5 163 46.6
Medtr8g012570 Medicago truncatula HOM05D003330 ORTHO05D003805 7.1e-25 117.5 151 46.4
Psat0s4107g0040 Pisum sativum HOM05D003330 ORTHO05D003805 7.1e-25 117.5 145 49.7
Glyma.16G089300 Glycine max HOM05D003330 ORTHO05D003805 1.6e-24 116.3 154 45.5
Lj3g0017252 Lotus japonicus HOM05D003330 ORTHO05D003805 1.6e-24 116.3 158 45.6
Prupe.8G196500 Prunus persica HOM05D003330 ORTHO05D003805 1.6e-24 116.3 161 47.2
Thecc.01G216800 Theobroma cacao HOM05D003330 ORTHO05D003805 2.1e-24 115.9 156 46.2
CiPaw.13G050400 Carya illinoinensis HOM05D003330 ORTHO05D003805 2.7e-24 115.5 154 48.1
Glyma.03G085100 Glycine max HOM05D003330 ORTHO05D003805 2.7e-24 115.5 142 50.0
QL09p049903 Quercus lobata HOM05D003330 ORTHO05D003805 2.7e-24 115.5 68 76.5
TPR.G31568 Trifolium pratense HOM05D003330 ORTHO05D003805 2.7e-24 115.5 155 45.2
Gorai.001G231000 Gossypium raimondii HOM05D003330 ORTHO05D003805 3.5e-24 115.2 100 56.0
MD05G1169300 Malus domestica HOM05D003330 ORTHO05D003805 3.5e-24 115.2 154 48.7
Manes.12G049200 Manihot esculenta HOM05D003330 ORTHO05D003805 3.5e-24 115.2 132 50.8
Dinv14525 Davidia involucrata HOM05D003330 ORTHO05D003805 7.8e-24 114.0 146 47.3
Eucgr.H00758 Eucalyptus grandis HOM05D003330 ORTHO05D003805 7.8e-24 114.0 160 46.2
Hma1.2p1_0149F.1_g066530 Hydrangea macrophylla HOM05D003330 ORTHO05D003805 7.8e-24 114.0 144 47.2
Lalb_Chr19g0125901 Lupinus albus HOM05D003330 ORTHO05D003805 7.8e-24 114.0 132 50.8
PGR083G2466 Punica granatum HOM05D003330 ORTHO05D003805 1.0e-23 113.6 132 51.5
Ca_23216_v3 Cicer arietinum L. HOM05D003330 ORTHO05D003805 1.3e-23 113.2 155 45.2
Gohir.A11G140200 Gossypium hirsutum HOM05D003330 ORTHO05D003805 1.3e-23 113.2 155 46.5
Hund05586 Selenicereus undatus HOM05D003330 ORTHO05D003805 1.3e-23 113.2 158 46.8
EL10Ac4g09084 Beta vulgaris HOM05D003330 ORTHO05D003805 2.3e-23 112.5 146 50.0
CSS0049579 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 2.3e-23 112.5 148 48.6
Cc01_g16540 Coffea canephora HOM05D003330 ORTHO05D003805 2.3e-23 112.5 154 48.1
Lalb_Chr03g0041371 Lupinus albus HOM05D003330 ORTHO05D003805 2.3e-23 112.5 68 76.5
Phvul.008G132600 Phaseolus vulgaris HOM05D003330 ORTHO05D003805 2.3e-23 112.5 131 50.4
VMungo1383G0348 Vigna mungo HOM05D003330 ORTHO05D003805 2.3e-23 112.5 153 46.4
arahy.Tifrunner.gnm1.ann1.K4VXRT Arachis hypogaea HOM05D003330 ORTHO05D003805 3.0e-23 112.1 154 45.5
arahy.Tifrunner.gnm1.ann1.T9C3HB Arachis hypogaea HOM05D003330 ORTHO05D003805 3.0e-23 112.1 154 45.5
Ca_07508_v3 Cicer arietinum L. HOM05D003330 ORTHO05D003805 3.0e-23 112.1 151 48.3
Actinidia30042 Actinidia chinensis HOM05D003330 ORTHO05D003805 3.9e-23 111.7 154 46.1
CSS0011751 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 3.9e-23 111.7 148 46.6
Lj2C1122T12 Lonicera japonica HOM05D003330 ORTHO05D003805 3.9e-23 111.7 144 48.6
Potri.014G195000 Populus trichocarpa HOM05D003330 ORTHO05D003805 3.9e-23 111.7 151 48.3
EL10Ac7g17933 Beta vulgaris HOM05D003330 ORTHO05D003805 5.1e-23 111.3 150 48.0
Medtr8g016030 Medicago truncatula HOM05D003330 ORTHO05D003805 5.1e-23 111.3 127 49.6
Cfa010402 Carpinus fangiana HOM05D003330 ORTHO05D003805 6.6e-23 110.9 91 62.6
FAN27G2838 Fragaria x ananassa HOM05D003330 ORTHO05D003805 6.6e-23 110.9 154 47.4
Rhsim13G0049900 Rhododendron simsii HOM05D003330 ORTHO05D003805 6.6e-23 110.9 145 47.6
EL10Ac6g13981 Beta vulgaris HOM05D003330 ORTHO05D003805 8.7e-23 110.5 139 50.4
Cpa.g.sc8.124 Carica papaya HOM05D003330 ORTHO05D003805 8.7e-23 110.5 67 76.1
Haze_03351 Corylus avellana HOM05D003330 ORTHO05D003805 8.7e-23 110.5 68 75.0
Gohir.D07G205000 Gossypium hirsutum HOM05D003330 ORTHO05D003805 1.1e-22 110.2 100 55.0
VMungo0331G0017 Vigna mungo HOM05D003330 ORTHO05D003805 1.1e-22 110.2 151 45.7
FvH4_2g18370 Fragaria vesca HOM05D003330 ORTHO05D003805 1.5e-22 109.8 154 47.4
FAN24G2302 Fragaria x ananassa HOM05D003330 ORTHO05D003805 1.5e-22 109.8 154 47.4
TPR.G29158 Trifolium pratense HOM05D003330 ORTHO05D003805 1.5e-22 109.8 151 48.3
FAN15G2534 Fragaria x ananassa HOM05D003330 ORTHO05D003805 1.9e-22 109.4 154 46.1
Peaxi162Scf01312g00058 Petunia axillaris HOM05D003330 ORTHO05D003805 1.9e-22 109.4 152 46.7
Actinidia09460 Actinidia chinensis HOM05D003330 ORTHO05D003805 3.3e-22 108.6 146 47.9
MSTRG.18828 Avicennia marina HOM05D003330 ORTHO05D003805 4.3e-22 108.2 156 48.1
Glyma.18G158900 Glycine max HOM05D003330 ORTHO05D003805 4.3e-22 108.2 67 74.6
Phvul.010G022900 Phaseolus vulgaris HOM05D003330 ORTHO05D003805 4.3e-22 108.2 145 49.0
vmacro02791 Vaccinium macrocarpon HOM05D003330 ORTHO05D003805 4.3e-22 108.2 143 46.2
Atru.chr1.3019 Acer truncatum HOM05D003330 ORTHO05D003805 5.6e-22 107.8 153 44.4
Actinidia23391 Actinidia chinensis HOM05D003330 ORTHO05D003805 5.6e-22 107.8 150 46.0
Glyma.08G347400 Glycine max HOM05D003330 ORTHO05D003805 5.6e-22 107.8 153 45.1
Psat3g149760 Pisum sativum HOM05D003330 ORTHO05D003805 5.6e-22 107.8 151 47.0
AUR62001147 Chenopodium quinoa HOM05D003330 ORTHO05D003805 7.3e-22 107.5 67 74.6
AUR62016529 Chenopodium quinoa HOM05D003330 ORTHO05D003805 7.3e-22 107.5 67 74.6
Medtr7g055700 Medicago truncatula HOM05D003330 ORTHO05D003805 7.3e-22 107.5 132 48.5
Peaxi162Scf01312g00009 Petunia axillaris HOM05D003330 ORTHO05D003805 7.3e-22 107.5 152 45.4
EL10Ac6g13228 Beta vulgaris HOM05D003330 ORTHO05D003805 9.6e-22 107.1 152 47.4
Atru.chr6.1444 Acer truncatum HOM05D003330 ORTHO05D003805 1.3e-21 106.7 153 44.4
RcHm_v2.0_Chr6g0283751 Rosa chinensis HOM05D003330 ORTHO05D003805 2.1e-21 105.9 69 75.4
Sabra02G0188100 Salix brachista HOM05D003330 ORTHO05D003805 2.1e-21 105.9 150 46.7
COL.COLO4_16110 Corchorus olitorius HOM05D003330 ORTHO05D003805 2.8e-21 105.5 67 73.1
SalBow3G1870 Salvia bowleyana HOM05D003330 ORTHO05D003805 4.8e-21 104.8 144 43.8
Ah.08g214460 Amaranthus hybridus HOM05D003330 ORTHO05D003805 6.2e-21 104.4 157 43.3
TWI75G0253 Tripterygium wilfordii HOM05D003330 ORTHO05D003805 6.2e-21 104.4 68 69.1
unitig_0.g1214 Utricularia gibba HOM05D003330 ORTHO05D003805 6.2e-21 104.4 146 45.2
BcaC05g29740 Brassica carinata HOM05D003330 ORTHO05D003805 1.1e-20 103.6 52 88.5
CAN.G874.15 Capsicum annuum HOM05D003330 ORTHO05D003805 1.1e-20 103.6 152 45.4
Solyc06g083230.3 Solanum lycopersicum HOM05D003330 ORTHO05D003805 1.1e-20 103.6 150 46.0
EL10Ac5g11651 Beta vulgaris HOM05D003330 ORTHO05D003805 1.4e-20 103.2 143 46.2
Sopen06g034620 Solanum pennellii HOM05D003330 ORTHO05D003805 1.4e-20 103.2 150 45.3
Nitab4.5_0003020g0100 Nicotiana tabacum HOM05D003330 ORTHO05D003805 1.8e-20 102.8 152 45.4
AUR62001148 Chenopodium quinoa HOM05D003330 ORTHO05D003805 2.4e-20 102.4 150 45.3
Nitab4.5_0002671g0010 Nicotiana tabacum HOM05D003330 ORTHO05D003805 2.4e-20 102.4 152 44.7
TWI36G0434 Tripterygium wilfordii HOM05D003330 ORTHO05D003805 2.4e-20 102.4 68 69.1
Sed0021953 Sechium edule HOM05D003330 ORTHO05D003805 3.1e-20 102.1 93 55.9
PGSC0003DMG400020105 Solanum tuberosum HOM05D003330 ORTHO05D003805 3.1e-20 102.1 152 45.4
CSS0043597 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 5.3e-20 101.3 68 69.1
CsaV3_1G041250 Cucumis sativus L. HOM05D003330 ORTHO05D003805 5.3e-20 101.3 165 39.4
ECA248G3375 Erigeron canadensis HOM05D003330 ORTHO05D003805 5.3e-20 101.3 144 47.2
Lsat_1_v5_gn_9_17281 Lactuca sativa HOM05D003330 ORTHO05D003805 5.3e-20 101.3 143 46.9
Peaxi162Scf00487g00619 Petunia axillaris HOM05D003330 ORTHO05D003805 5.3e-20 101.3 150 44.0
Potri.002G247100 Populus trichocarpa HOM05D003330 ORTHO05D003805 5.3e-20 101.3 149 47.0
Rhsim01G0251100 Rhododendron simsii HOM05D003330 ORTHO05D003805 5.3e-20 101.3 145 45.5
vmacro14723 Vaccinium macrocarpon HOM05D003330 ORTHO05D003805 5.3e-20 101.3 145 46.9
CDE05G3099 Ceratophyllum demersum HOM05D003330 ORTHO05D003805 9.0e-20 100.5 137 48.9
TAR365G0843 Trochodendron aralioides HOM05D003330 ORTHO05D003805 9.0e-20 100.5 139 46.0
Oeu023105.2 Olea europaea HOM05D003330 ORTHO05D003805 1.2e-19 100.1 62 74.2
Sed0013413 Sechium edule HOM05D003330 ORTHO05D003805 1.2e-19 100.1 73 65.8
ClCG09G008720 Citrullus lanatus HOM05D003330 ORTHO05D003805 1.5e-19 99.8 73 64.4
CsaV3_7G026240 Cucumis sativus L. HOM05D003330 ORTHO05D003805 1.5e-19 99.8 73 63.0
Dinv19152 Davidia involucrata HOM05D003330 ORTHO05D003805 2.0e-19 99.4 67 68.7
Migut.N00638 Erythranthe guttata HOM05D003330 ORTHO05D003805 2.0e-19 99.4 87 56.3
TAR636G1967 Trochodendron aralioides HOM05D003330 ORTHO05D003805 2.0e-19 99.4 66 68.2
Dinv28843 Davidia involucrata HOM05D003330 ORTHO05D003805 2.6e-19 99.0 67 67.2
SGA_v2.0_scaffold77G25273 Striga asiatica HOM05D003330 ORTHO05D003805 3.4e-19 98.6 143 44.8
AUR62016528 Chenopodium quinoa HOM05D003330 ORTHO05D003805 4.5e-19 98.2 66 68.2
MELO3C021071.2 Cucumis melo HOM05D003330 ORTHO05D003805 4.5e-19 98.2 73 63.0
Nitab4.5_0000403g0090 Nicotiana tabacum HOM05D003330 ORTHO05D003805 4.5e-19 98.2 145 44.8
SHI03884 Sapria himalayana HOM05D003330 ORTHO05D003805 4.5e-19 98.2 117 46.2
Nn3g20070 Nelumbo nucifera HOM05D003330 ORTHO05D003805 5.8e-19 97.8 66 66.7
BcaC05g29738 Brassica carinata HOM05D003330 ORTHO05D003805 1.3e-18 96.7 53 92.5
HanXRQChr01g0015341 Helianthus annuus HOM05D003330 ORTHO05D003805 2.9e-18 95.5 65 69.2
Lsat_1_v5_gn_5_177621 Lactuca sativa HOM05D003330 ORTHO05D003805 6.4e-18 94.4 66 66.7
arahy.Tifrunner.gnm1.ann1.VPSC2F Arachis hypogaea HOM05D003330 ORTHO05D003805 8.4e-18 94.0 117 50.4
EL10Ac8g19985 Beta vulgaris HOM05D003330 ORTHO05D003805 8.4e-18 94.0 120 48.3
Aqoxy4G02436 Aquilegia oxysepala HOM05D003330 ORTHO05D003805 1.1e-17 93.6 69 62.3
Actinidia23766 Actinidia chinensis HOM05D003330 ORTHO05D003805 1.4e-17 93.2 85 58.8
Aqoxy5G00019 Aquilegia oxysepala HOM05D003330 ORTHO05D003805 1.4e-17 93.2 69 62.3
MBI07_g27660_MAGBIO Magnolia biondii HOM05D003330 ORTHO05D003805 1.9e-17 92.8 111 45.9
ATR0561G197 Amborella trichopoda HOM05D003330 ORTHO05D003805 6.0e-16 87.8 66 60.6
Gohir.D08G057950 Gossypium hirsutum HOM05D003330 ORTHO05D003805 7.9e-16 87.4 63 68.3
Zm00001eb067370 Zea mays HOM05D003330 ORTHO05D003805 1.8e-15 86.3 66 65.2
VMungo0331G1861 Vigna mungo HOM05D003330 ORTHO05D003805 3.9e-15 85.1 54 72.2
CDE05G3534 Ceratophyllum demersum HOM05D003330 ORTHO05D003805 6.7e-15 84.3 150 40.7
Zm00001eb432940 Zea mays HOM05D003330 ORTHO05D003805 6.7e-15 84.3 66 63.6
PSO017G6109 Papaver somniferum HOM05D003330 ORTHO05D003805 1.1e-14 83.6 68 55.9
PSO063G6993 Papaver somniferum HOM05D003330 ORTHO05D003805 1.5e-14 83.2 68 55.9
BcaB04g21299 Brassica carinata HOM05D003330 ORTHO05D003805 1.9e-14 82.8 125 47.2
PSO210G4671 Papaver somniferum HOM05D003330 ORTHO05D003805 4.3e-14 81.6 62 59.7
HPP92_011785 Vanilla planifolia HOM05D003330 ORTHO05D003805 7.4e-14 80.9 67 59.7
Mapoly0054s0102 Marchantia polymorpha HOM05D003330 ORTHO05D003805 4.8e-13 78.2 78 51.3
SEGI_24025 Sequoiadendron giganteum HOM05D003330 ORTHO05D003805 4.8e-13 78.2 62 56.5
HPP92_013633 Vanilla planifolia HOM05D003330 ORTHO05D003805 1.1e-12 77.0 135 38.5
Gorai.004G059200 Gossypium raimondii HOM05D003330 ORTHO05D003805 1.8e-12 76.3 54 70.4
Nn1g08206 Nelumbo nucifera HOM05D003330 ORTHO05D003805 4.5e-11 71.6 68 51.5
Manes.13G051100 Manihot esculenta HOM05D003330 ORTHO05D003805 5.8e-11 71.2 66 54.5
AagrBONN_evm.TU.Sc2ySwM_228.1207 Anthoceros agrestis HOM05D003330 ORTHO05D003805 7.6e-11 70.9 60 56.7
Pp3c11_25080 Physcomitrium patens HOM05D003330 ORTHO05D003805 3.2e-09 65.5 80 42.5
SMO364G0593 Selaginella moellendorffii HOM05D003330 ORTHO05D003805 4.2e-09 65.1 65 50.8
BraA05t22824Z Brassica rapa HOM05D003330 ORTHO05D003805 2.7e-08 62.4 59 61.0
Pp3c7_8060 Physcomitrium patens HOM05D003330 ORTHO05D003805 1.0e-07 60.5 77 41.6
CBR_g4634 Chara braunii HOM05D003330 ORTHO05D003805 5.1e-07 58.2 79 41.8
CBR_g5640 Chara braunii HOM05D003330 ORTHO05D003805 5.1e-07 58.2 79 41.8
Oeu009708.1 Olea europaea HOM05D003330 ORTHO05D003805 5.1e-07 58.2 60 53.3
MCO13G245 Micromonas commoda HOM05D003330 ORTHO05D003805 5.6e-06 54.7 57 43.9


User provided reference genes

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