Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 3.8e-54 214.5 105 100.0
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 3.8e-54 214.5 105 100.0
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 2.7e-52 208.4 105 96.2
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 6.1e-52 207.2 105 95.2
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 6.9e-40 167.2 105 77.1
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 7.7e-39 163.7 97 79.4
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 1.0e-38 163.3 95 78.9
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 2.2e-38 162.2 79 93.7
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.4e-37 159.5 93 78.5
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 7.2e-37 157.1 89 88.8
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 7.2e-37 157.1 105 72.4
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 7.2e-37 157.1 105 72.4
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 2.1e-36 155.6 105 72.4
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 3.6e-36 154.8 95 75.8
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 4.7e-36 154.5 105 71.4
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 6.1e-36 154.1 105 70.5
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 2.0e-31 139.0 92 66.3
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 3.5e-31 138.3 95 64.2
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.7e-30 136.0 78 79.5
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 3.8e-30 134.8 93 61.3
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 1.5e-29 132.9 92 63.0
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 1.5e-29 132.9 103 59.2
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 1.9e-29 132.5 103 56.3
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 2.5e-29 132.1 103 58.3
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 3.2e-29 131.7 93 60.2
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 7.2e-29 130.6 103 57.3
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 7.2e-29 130.6 92 64.1
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 1.2e-28 129.8 93 59.1
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 2.1e-28 129.0 98 58.2
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 2.7e-28 128.6 104 54.8
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 4.7e-28 127.9 94 57.4
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 4.7e-28 127.9 102 50.0
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 6.1e-28 127.5 93 60.2
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 1.0e-27 126.7 93 62.4
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 1.0e-27 126.7 89 62.9
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 1.4e-27 126.3 100 55.0
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 1.8e-27 125.9 93 59.1
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 2.3e-27 125.6 101 55.4
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 2.3e-27 125.6 97 57.7
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 5.2e-27 124.4 94 57.4
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 5.2e-27 124.4 97 56.7
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 6.7e-27 124.0 93 59.1
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 6.7e-27 124.0 95 54.7
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 6.7e-27 124.0 93 59.1
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 8.8e-27 123.6 98 52.0
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 8.8e-27 123.6 93 60.2
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 1.1e-26 123.2 93 60.2
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.0e-26 122.5 86 59.3
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 2.0e-26 122.5 93 58.1
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 2.0e-26 122.5 94 54.3
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 2.6e-26 122.1 93 57.0
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 2.6e-26 122.1 97 55.7
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 2.6e-26 122.1 94 54.3
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 4.4e-26 121.3 92 60.9
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 4.4e-26 121.3 98 56.1
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 7.5e-26 120.6 93 57.0
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 9.7e-26 120.2 75 64.0
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 9.7e-26 120.2 94 56.4
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 1.3e-25 119.8 94 52.1
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.7e-25 119.4 93 57.0
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.7e-25 119.4 93 57.0
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 2.2e-25 119.0 97 55.7
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 2.2e-25 119.0 75 62.7
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 2.2e-25 119.0 102 52.9
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 2.2e-25 119.0 98 54.1
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.2e-25 119.0 93 55.9
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 2.8e-25 118.6 83 57.8
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 3.7e-25 118.2 83 61.4
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.7e-25 118.2 94 54.3
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 4.8e-25 117.9 93 55.9
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 4.8e-25 117.9 93 53.8
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 4.8e-25 117.9 93 54.8
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 62.7
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 62.7
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 62.7
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 6.3e-25 117.5 102 53.9
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 64.0
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 8.2e-25 117.1 75 64.0
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 8.2e-25 117.1 75 62.7
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 8.2e-25 117.1 94 54.3
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 1.1e-24 116.7 100 52.0
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 1.1e-24 116.7 93 52.7
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 2.4e-24 115.5 75 64.0
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 2.4e-24 115.5 75 64.0
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 2.4e-24 115.5 75 64.0
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 2.4e-24 115.5 98 57.1
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 2.4e-24 115.5 74 62.2
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 3.1e-24 115.2 91 53.8
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 3.1e-24 115.2 85 56.5
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 3.1e-24 115.2 75 61.3
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 3.1e-24 115.2 75 61.3
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 3.1e-24 115.2 75 61.3
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 3.1e-24 115.2 75 61.3
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 3.1e-24 115.2 75 61.3
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 3.1e-24 115.2 75 61.3
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 3.1e-24 115.2 75 61.3
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 3.1e-24 115.2 97 52.6
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 3.1e-24 115.2 95 49.5
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 3.1e-24 115.2 91 54.9
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.3e-24 114.4 100 53.0
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 5.3e-24 114.4 91 53.8
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 7.0e-24 114.0 90 52.2
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 9.1e-24 113.6 104 49.0
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.2e-23 113.2 85 58.8
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 2.7e-23 112.1 98 51.0
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 3.5e-23 111.7 94 52.1
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 5.9e-23 110.9 98 48.0
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 2.2e-22 109.0 93 50.5
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 3.8e-22 108.2 96 52.1
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 1.1e-21 106.7 90 51.1
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 9.4e-21 103.6 92 47.8
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 2.1e-20 102.4 92 47.8
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 3.6e-20 101.7 92 46.7
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 1.8e-19 99.4 74 56.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.7e-17 92.8 91 49.5
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.7e-17 92.8 91 49.5
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 2.0e-15 85.9 59 59.3
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 2.0e-15 85.9 103 35.9
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 2.7e-15 85.5 73 53.4
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 2.3e-11 72.4 89 37.1
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 5.4e-08 61.2 99 33.3
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.2e-07 60.1 94 35.1
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 2.7e-07 58.9 97 34.0
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 3.5e-07 58.5 96 33.3
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 7.7e-07 57.4 94 33.0
CANSAT25G3026 Cannabis sativa HOM05D000489 ORTHO05D000372 2.3e-06 55.8 100 36.0


User provided reference genes

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