Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 0.0e+00 1323.1 668 100.0
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 0.0e+00 1276.9 683 95.6
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 0.0e+00 1225.7 668 91.8
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 0.0e+00 1209.9 690 89.3
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 0.0e+00 1182.5 669 89.8
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 0.0e+00 1121.3 683 83.6
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 0.0e+00 1085.9 682 81.2
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 2.2e-304 1048.5 679 79.1
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 1.2e-302 1042.7 679 78.5
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 6.1e-291 1003.8 684 75.0
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 7.3e-284 980.3 681 74.4
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.6e-243 846.3 689 62.1
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 6.7e-229 797.7 488 81.8
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.7e-203 713.4 681 54.6
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.5e-201 706.8 681 54.2
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 1.0e-200 704.1 689 52.0
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 6.5e-200 701.4 686 52.5
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.4e-199 700.3 677 51.8
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 1.3e-195 687.2 655 53.9
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 2.2e-195 686.4 696 51.6
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 1.1e-194 684.1 668 51.6
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 3.1e-194 682.6 692 50.1
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 5.9e-193 678.3 693 50.4
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 3.2e-191 672.5 686 51.3
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 6.7e-189 664.8 692 49.9
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 4.4e-188 662.1 692 49.7
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 7.5e-188 661.4 695 49.2
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.2e-187 659.8 707 49.4
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.0e-185 653.3 707 48.9
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.9e-183 646.7 669 48.7
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 6.1e-182 641.7 675 48.6
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.2e-180 637.5 740 46.5
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 2.6e-180 636.3 691 47.2
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 5.7e-180 635.2 672 48.1
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 9.8e-180 634.4 692 48.1
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 2.8e-179 632.9 675 48.7
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 6.3e-179 631.7 683 48.2
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 8.3e-179 631.3 685 48.9
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 1.1e-178 630.9 677 48.0
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 2.0e-177 626.7 684 48.7
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.3e-176 624.0 647 48.7
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 9.5e-175 617.8 666 48.5
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 9.5e-175 617.8 696 46.1
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 4.7e-174 615.5 679 48.0
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.0e-173 614.4 667 48.7
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.4e-173 614.0 692 47.1
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 6.8e-173 611.7 695 46.8
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 6.8e-173 611.7 678 46.9
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.3e-171 607.4 691 45.7
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 2.2e-171 606.7 671 46.9
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 8.3e-171 604.7 389 79.2
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 1.1e-170 604.4 676 49.0
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 5.4e-170 602.1 683 46.4
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 7.0e-170 601.7 684 45.3
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.6e-169 600.5 683 45.5
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 4.5e-169 599.0 591 54.1
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.0e-168 597.8 684 45.8
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.7e-166 589.0 664 46.5
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 8.0e-166 588.2 688 44.8
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 3.1e-165 586.3 684 45.9
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 4.0e-165 585.9 677 47.1
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 8.9e-165 584.7 610 48.7
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 2.0e-164 583.6 692 45.5
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 3.4e-164 582.8 678 46.5
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.9e-163 579.7 683 47.1
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 8.3e-163 578.2 674 46.4
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.4e-162 577.4 681 46.7
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 4.1e-162 575.9 684 44.3
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 8.6e-160 568.2 690 45.1
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.8e-157 558.5 683 45.4
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 1.3e-155 554.3 668 45.8
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 4.0e-149 532.7 483 53.4
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.3e-147 527.7 717 41.7
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 4.1e-146 522.7 492 51.8
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 2.1e-145 520.4 685 43.1
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 7.8e-145 518.5 581 46.0
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 2.1e-142 510.4 537 51.6
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 2.4e-141 506.9 673 41.9
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 2.7e-137 493.4 418 59.1
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 6.0e-137 492.3 452 55.8
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 8.7e-136 488.4 435 54.3
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 9.0e-133 478.4 393 59.0
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 1.3e-128 464.5 603 44.1
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.4e-125 454.5 553 42.7
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 7.4e-119 432.2 474 48.1
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 1.6e-113 414.5 640 38.6
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.3e-111 406.8 438 50.9
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 1.3e-110 404.8 492 45.9
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 2.1e-110 404.1 595 40.2
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 8.2e-110 402.1 549 41.2
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.8e-109 401.0 427 49.6
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 1.5e-108 397.9 530 42.1
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 5.9e-100 369.4 500 39.8
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 2.2e-94 350.9 658 33.1
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 6.3e-94 349.4 702 32.3
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 4.4e-87 326.6 768 29.3
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.7e-83 314.7 703 31.4
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 8.5e-83 312.4 731 30.6
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.1e-82 312.0 703 31.2
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.4e-77 295.0 225 62.2
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 5.5e-74 283.1 587 32.4
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.0e-71 274.6 687 30.9
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 8.3e-70 269.2 406 37.9
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 2.3e-51 208.0 189 54.5
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 2.0e-47 194.9 168 55.4
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.7e-43 181.8 159 50.3
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.5e-42 178.7 322 35.1
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 8.9e-40 169.5 221 42.1
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.0e-35 156.0 131 53.4
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-32 146.0 306 31.7
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 6.6e-27 126.7 148 43.9
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 1.6e-25 122.1 192 41.1
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 1.8e-24 118.6 89 59.6
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 6.8e-24 116.7 131 45.8
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 2.0e-23 115.2 194 36.1
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 2.9e-22 111.3 178 36.5
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.5e-20 104.4 247 27.9
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 6.4e-14 83.6 132 34.8
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 1.4e-13 82.4 90 44.4
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.7e-11 75.5 59 54.2
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 7.6e-07 60.1 272 25.7
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 1.7e-06 58.9 321 24.0
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 3.8e-06 57.8 272 24.6
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 4.9e-06 57.4 313 24.6
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 8.4e-06 56.6 272 25.0


User provided reference genes

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