Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p59770 Brassica napus HOM05D005998 ORTHO05D007664 1.3e-160 570.1 391 100.0
BolC5t34631H Brassica oleracea HOM05D005998 ORTHO05D007664 3.1e-157 558.9 391 98.0
BraA05t22797Z Brassica rapa HOM05D005998 ORTHO05D007664 8.6e-144 514.2 396 82.8
BcaC05g29549 Brassica carinata HOM05D005998 ORTHO05D007664 2.9e-139 499.2 295 100.0
A05p40660 Brassica napus HOM05D005998 ORTHO05D007664 6.0e-137 491.5 396 80.3
Sp3g06470 Schrenkiella parvula HOM05D005998 ORTHO05D007664 4.0e-133 478.8 395 82.0
Thhalv10020882m.g Eutrema salsugineum HOM05D005998 ORTHO05D007664 1.4e-125 453.8 390 79.2
AT3G07550 Arabidopsis thaliana HOM05D005998 ORTHO05D007664 3.1e-125 452.6 394 78.7
AL3G18890 Arabidopsis lyrata HOM05D005998 ORTHO05D007664 2.6e-124 449.5 393 79.1
BcaC05g29548 Brassica carinata HOM05D005998 ORTHO05D007664 2.9e-123 446.0 372 84.1
Carub.0003s0710 Capsella rubella HOM05D005998 ORTHO05D007664 3.8e-115 419.1 386 74.9
THA.LOC104819025 Tarenaya hassleriana HOM05D005998 ORTHO05D007664 7.1e-106 388.3 393 71.0
Aa31LG5G18090 Aethionema arabicum HOM05D005998 ORTHO05D007664 1.4e-101 374.0 390 70.8
CARHR082230 Cardamine hirsuta HOM05D005998 ORTHO05D007664 6.9e-101 371.7 390 71.8
Atru.chr6.3489 Acer truncatum HOM05D005998 ORTHO05D007664 3.8e-83 312.8 378 66.1
COL.COLO4_29925 Corchorus olitorius HOM05D005998 ORTHO05D007664 8.5e-83 311.6 377 63.1
Manes.13G057500 Manihot esculenta HOM05D005998 ORTHO05D007664 1.4e-80 304.3 377 68.4
Ciclev10015543m.g Citrus clementina HOM05D005998 ORTHO05D007664 8.8e-80 301.6 378 66.4
TWI75G0247 Tripterygium wilfordii HOM05D005998 ORTHO05D007664 2.0e-79 300.4 379 59.9
RcHm_v2.0_Chr6g0281791 Rosa chinensis HOM05D005998 ORTHO05D007664 7.4e-79 298.5 376 66.5
Thecc.01G205300 Theobroma cacao HOM05D005998 ORTHO05D007664 9.7e-79 298.1 378 61.9
Cpa.g.sc8.24 Carica papaya HOM05D005998 ORTHO05D007664 1.2e-76 291.2 370 61.6
CANSAT25G0419 Cannabis sativa HOM05D005998 ORTHO05D007664 7.7e-76 288.5 373 60.9
Prupe.8G184400 Prunus persica HOM05D005998 ORTHO05D007664 1.5e-74 284.3 376 62.5
PGR083G1807 Punica granatum HOM05D005998 ORTHO05D007664 1.9e-74 283.9 376 61.2
QL09p045684 Quercus lobata HOM05D005998 ORTHO05D007664 2.5e-74 283.5 376 62.2
Gohir.A11G144800 Gossypium hirsutum HOM05D005998 ORTHO05D007664 1.6e-73 280.8 377 61.0
Lj2A1109T75 Lonicera japonica HOM05D005998 ORTHO05D007664 3.6e-73 279.6 376 47.1
Gohir.D11G153100 Gossypium hirsutum HOM05D005998 ORTHO05D007664 1.0e-72 278.1 377 61.0
Gorai.007G162000 Gossypium raimondii HOM05D005998 ORTHO05D007664 1.0e-72 278.1 377 61.0
TAR362G0769 Trochodendron aralioides HOM05D005998 ORTHO05D007664 1.3e-70 271.2 375 64.3
Potri.017G056400 Populus trichocarpa HOM05D005998 ORTHO05D007664 6.3e-70 268.9 376 66.2
FvH4_2g17281 Fragaria vesca HOM05D005998 ORTHO05D007664 8.2e-70 268.5 376 63.8
MD05G1151800 Malus domestica HOM05D005998 ORTHO05D007664 4.1e-69 266.2 378 60.8
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 5.3e-69 265.8 382 57.3
PSO017G2023 Papaver somniferum HOM05D005998 ORTHO05D007664 1.7e-67 260.8 374 61.8
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 5.5e-66 255.8 372 39.2
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 2.1e-65 253.8 289 52.9
Sabra17G0050000 Salix brachista HOM05D005998 ORTHO05D007664 6.1e-65 252.3 375 64.0
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 1.8e-64 250.8 377 45.1
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 2.3e-64 250.4 373 43.2
CSS0043446 Camellia sinensis var. sinensis HOM05D005998 ORTHO05D007664 2.6e-63 246.9 353 59.2
Cc02_g30680 Coffea canephora HOM05D005998 ORTHO05D007664 5.9e-60 235.7 378 50.8
Eucgr.H00683 Eucalyptus grandis HOM05D005998 ORTHO05D007664 5.9e-60 235.7 388 61.1
Sabra17G0048300 Salix brachista HOM05D005998 ORTHO05D007664 2.9e-59 233.4 362 63.5
Nitab4.5_0003952g0080 Nicotiana tabacum HOM05D005998 ORTHO05D007664 2.7e-57 226.9 376 51.6
EL10Ac5g10571 Beta vulgaris HOM05D005998 ORTHO05D007664 4.7e-57 226.1 369 51.5
Peaxi162Scf00372g00061 Petunia axillaris HOM05D005998 ORTHO05D007664 5.2e-56 222.6 376 49.5
Nitab4.5_0002641g0010 Nicotiana tabacum HOM05D005998 ORTHO05D007664 5.7e-55 219.2 376 50.8
PGSC0003DMG400020641 Solanum tuberosum HOM05D005998 ORTHO05D007664 1.7e-54 217.6 384 50.3
Duzib211G0440 Durio zibethinus HOM05D005998 ORTHO05D007664 6.3e-54 215.7 310 68.1
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 8.3e-54 215.3 377 40.8
Solyc06g007680.1 Solanum lycopersicum HOM05D005998 ORTHO05D007664 3.1e-53 213.4 384 50.3
CAN.G181.48 Capsicum annuum HOM05D005998 ORTHO05D007664 5.4e-53 212.6 385 40.8
Sopen06g002580 Solanum pennellii HOM05D005998 ORTHO05D007664 3.5e-52 209.9 384 49.7
Lsat_1_v5_gn_8_98580 Lactuca sativa HOM05D005998 ORTHO05D007664 6.6e-51 205.7 372 45.2
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 6.1e-49 199.1 253 60.5
Hma1.2p1_1756F.1_g301020 Hydrangea macrophylla HOM05D005998 ORTHO05D007664 1.8e-48 197.6 386 37.6
Haze_03601 Corylus avellana HOM05D005998 ORTHO05D007664 1.8e-45 187.6 399 39.6
AUR62008051 Chenopodium quinoa HOM05D005998 ORTHO05D007664 2.4e-45 187.2 381 51.7
Lsat_1_v5_gn_4_46380 Lactuca sativa HOM05D005998 ORTHO05D007664 1.2e-44 184.9 296 51.4
Lj3g0009731 Lotus japonicus HOM05D005998 ORTHO05D007664 1.6e-44 184.5 379 56.2
PSO573G0042 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-43 181.4 378 45.8
PSO573G0007 Papaver somniferum HOM05D005998 ORTHO05D007664 2.3e-43 180.6 323 48.6
PSO017G6055 Papaver somniferum HOM05D005998 ORTHO05D007664 6.6e-43 179.1 316 48.7
Ca_23566_v3 Cicer arietinum L. HOM05D005998 ORTHO05D007664 5.6e-42 176.0 378 57.7
Psat4g158400 Pisum sativum HOM05D005998 ORTHO05D007664 3.1e-40 170.2 385 55.6
AUR62028626 Chenopodium quinoa HOM05D005998 ORTHO05D007664 4.0e-40 169.9 276 47.1
HPP92_024394 Vanilla planifolia HOM05D005998 ORTHO05D007664 4.0e-40 169.9 294 47.3
HanXRQChr08g0231291 Helianthus annuus HOM05D005998 ORTHO05D007664 6.8e-40 169.1 287 46.7
HanXRQChr08g0231301 Helianthus annuus HOM05D005998 ORTHO05D007664 6.8e-40 169.1 287 46.7
Medtr8g028140 Medicago truncatula HOM05D005998 ORTHO05D007664 8.9e-40 168.7 385 56.4
SEGI_17775 Sequoiadendron giganteum HOM05D005998 ORTHO05D007664 5.8e-39 166.0 290 43.8
Glyma.07G060100 Glycine max HOM05D005998 ORTHO05D007664 2.2e-38 164.1 378 55.0
TPR.G5126 Trifolium pratense HOM05D005998 ORTHO05D007664 5.4e-37 159.5 387 54.8
RcHm_v2.0_Chr5g0064201 Rosa chinensis HOM05D005998 ORTHO05D007664 3.5e-36 156.8 269 47.2
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 6.0e-36 156.0 364 37.6
HanXRQChr08g0231281 Helianthus annuus HOM05D005998 ORTHO05D007664 1.3e-35 154.8 289 43.6
PSO017G3521 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-34 151.8 295 43.1
ECA247G3308 Erigeron canadensis HOM05D005998 ORTHO05D007664 3.3e-34 150.2 290 41.7
ATR0743G036 Amborella trichopoda HOM05D005998 ORTHO05D007664 2.3e-32 144.1 282 46.1
Os11g0264200 Oryza sativa ssp. japonica HOM05D005998 ORTHO05D007664 3.1e-32 143.7 287 47.4
Zm00001eb112540 Zea mays HOM05D005998 ORTHO05D007664 9.8e-31 138.7 296 44.3
Dinv28780 Davidia involucrata HOM05D005998 ORTHO05D003775 1.7e-30 137.9 187 59.4
RcHm_v2.0_Chr7g0205731 Rosa chinensis HOM05D005998 ORTHO05D007664 1.1e-29 135.2 171 53.8
MD10G1146000 Malus domestica HOM05D005998 ORTHO05D007664 1.2e-28 131.7 283 47.3
PSO017G0196 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-26 125.2 286 36.0
ECA247G2512 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.5e-26 124.0 299 29.4
Mapoly0166s0007 Marchantia polymorpha HOM05D005998 ORTHO05D007664 2.3e-24 117.5 292 40.4
ECA232G4734 Erigeron canadensis HOM05D005998 ORTHO05D007664 4.0e-24 116.7 289 38.8
ECA247G1983 Erigeron canadensis HOM05D005998 ORTHO05D007664 6.8e-24 115.9 306 28.1
PSO675G7594 Papaver somniferum HOM05D005998 ORTHO05D007664 2.9e-22 110.5 298 35.2
PSO541G3130 Papaver somniferum HOM05D005998 ORTHO05D007664 3.8e-22 110.2 297 35.7
DCAR_000509 Daucus carota HOM05D005998 ORTHO05D007664 3.2e-21 107.1 240 54.2
PSO017G5443 Papaver somniferum HOM05D005998 ORTHO05D007664 7.8e-20 102.4 252 38.5
Duzib138G0171 Durio zibethinus HOM05D005998 ORTHO05D007664 3.9e-19 100.1 86 55.8
Zm00001eb182340 Zea mays HOM05D005998 ORTHO05D015715 3.9e-19 100.1 181 33.7
PSO837G0060 Papaver somniferum HOM05D005998 ORTHO05D007664 1.9e-18 97.8 267 39.0
CDE08G0319 Ceratophyllum demersum HOM05D005998 ORTHO05D007664 3.3e-18 97.1 92 50.0
PSO218G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 3.6e-17 93.6 287 33.8
PSO340G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 3.6e-17 93.6 287 33.8
PSO675G6053 Papaver somniferum HOM05D005998 ORTHO05D007664 3.6e-17 93.6 287 33.8
PSO675G6885 Papaver somniferum HOM05D005998 ORTHO05D007664 3.6e-17 93.6 287 33.8
ECA247G3549 Erigeron canadensis HOM05D005998 ORTHO05D007664 8.9e-16 89.0 376 39.4
Rhsim13G0055600 Rhododendron simsii HOM05D005998 ORTHO05D007664 8.9e-16 89.0 288 27.1
PSO675G8174 Papaver somniferum HOM05D005998 ORTHO05D007664 3.4e-15 87.0 286 33.6
Oeu064702.2 Olea europaea HOM05D005998 ORTHO05D007664 1.3e-14 85.1 135 37.0
PSO017G6716 Papaver somniferum HOM05D005998 ORTHO05D007664 1.7e-14 84.7 272 36.4
PSO837G0015 Papaver somniferum HOM05D005998 ORTHO05D007664 4.9e-14 83.2 304 34.9
Zm00001eb048880 Zea mays HOM05D005998 ORTHO05D015715 4.9e-14 83.2 94 45.7
ECA247G2923 Erigeron canadensis HOM05D005998 ORTHO05D003386 8.4e-14 82.4 272 41.9
PSO017G4719 Papaver somniferum HOM05D005998 ORTHO05D007664 1.2e-12 78.6 141 37.6
PSO017G6639 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-11 75.1 170 32.9
PSO017G2859 Papaver somniferum HOM05D005998 ORTHO05D007664 2.5e-10 70.9 237 36.7
ECA247G1593 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.6e-10 68.9 235 26.0
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 3.6e-09 67.0 157 30.6
PSO017G0268 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-08 65.5 141 34.8
PSO017G7250 Papaver somniferum HOM05D005998 ORTHO05D007664 1.8e-08 64.7 252 35.3
PSO675G5104 Papaver somniferum HOM05D005998 ORTHO05D007664 6.9e-08 62.8 208 35.1
ECA247G1907 Erigeron canadensis HOM05D005998 ORTHO05D007664 5.8e-07 59.7 85 38.8
PSO541G0922 Papaver somniferum HOM05D005998 ORTHO05D007664 1.7e-06 58.2 182 36.3
PSO017G7319 Papaver somniferum HOM05D005998 ORTHO05D007664 2.2e-06 57.8 94 34.0
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 2.9e-06 57.4 165 26.1
CDE05G3454 Ceratophyllum demersum HOM05D002125 ORTHO05D002105 3.8e-06 57.0 142 31.0
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 6.4e-06 56.2 156 27.6
CDE05G1651 Ceratophyllum demersum HOM05D001993 ORTHO05D009037 6.4e-06 56.2 156 27.6
Lsat_1_v5_gn_5_7881 Lactuca sativa HOM05D001993 ORTHO05D009037 6.4e-06 56.2 138 29.7
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 8.4e-06 55.8 165 25.5


User provided reference genes

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