Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 0.0e+00 1136.3 598 100.0
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 0.0e+00 1126.7 598 98.3
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 0.0e+00 1123.2 597 99.0
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 0.0e+00 1099.0 598 97.3
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.0e-309 1065.1 597 94.0
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 7.6e-309 1063.1 597 93.8
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.0e-308 1062.8 596 94.0
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 2.5e-307 1058.1 597 93.3
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.8e-305 1052.0 597 92.3
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 3.0e-305 1051.2 597 93.1
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.1e-304 1049.3 597 92.1
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 9.6e-304 1046.2 597 92.0
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.3e-303 1045.8 597 92.0
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 6.2e-303 1043.5 598 92.0
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.5e-301 1038.9 599 91.8
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.7e-300 1035.4 599 91.7
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 2.7e-298 1028.1 599 91.0
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 3.5e-298 1027.7 596 91.9
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 3.1e-286 988.0 591 88.2
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 5.9e-269 930.6 593 82.3
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 2.8e-250 868.6 601 76.4
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 8.0e-250 867.1 596 76.8
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.0e-249 866.7 588 76.0
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.4e-249 866.3 596 76.3
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 5.2e-249 864.4 592 77.5
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 8.9e-249 863.6 594 76.8
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.2e-248 863.2 596 76.7
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 4.4e-248 861.3 596 74.7
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.3e-247 859.8 593 74.2
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.2e-247 859.0 592 76.5
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 8.3e-247 857.1 583 78.2
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.1e-246 856.7 595 75.6
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.4e-246 855.5 588 75.2
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.2e-246 855.1 595 76.8
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.2e-246 855.1 583 77.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 5.4e-246 854.4 576 78.3
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 5.4e-246 854.4 594 74.9
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 5.4e-246 854.4 579 75.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 9.2e-246 853.6 579 75.8
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.6e-245 852.8 595 76.6
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.0e-245 852.4 597 75.5
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 4.6e-245 851.3 579 75.1
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.9e-245 850.9 595 76.3
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.9e-245 850.9 594 75.8
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.7e-244 849.4 590 76.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.3e-244 849.0 579 75.6
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.0e-244 848.6 590 74.9
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.9e-243 845.9 597 74.4
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.3e-243 845.1 594 74.7
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 4.3e-243 844.7 592 74.3
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 5.6e-243 844.3 570 76.7
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 7.3e-243 844.0 580 75.2
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 9.5e-243 843.6 593 74.0
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.5e-243 843.6 594 74.2
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.6e-242 842.8 602 74.1
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.1e-242 842.4 594 74.1
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 8.0e-242 840.5 592 74.3
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.0e-241 840.1 592 74.2
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.8e-241 839.3 594 74.7
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.0e-241 838.2 594 74.9
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.8e-241 837.4 594 74.9
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 2.6e-240 835.5 597 74.7
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.6e-240 835.5 596 73.8
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 3.4e-240 835.1 596 74.7
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.3e-239 833.2 602 73.9
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.7e-239 832.8 598 73.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 8.3e-239 830.5 593 72.8
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.4e-238 829.7 594 72.4
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 2.4e-238 828.9 598 72.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 5.4e-238 827.8 578 73.7
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 9.2e-238 827.0 572 75.2
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.7e-237 825.5 596 73.0
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 2.7e-237 825.5 600 73.0
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.9e-236 821.6 594 73.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 5.0e-236 821.2 592 73.6
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.1e-235 820.1 577 74.2
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.6e-234 816.2 563 75.3
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 4.7e-234 814.7 555 75.7
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 1.1e-233 813.5 613 71.5
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.1e-233 813.5 570 74.4
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.4e-233 813.1 566 75.1
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.4e-233 813.1 703 63.7
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 3.1e-233 812.0 591 72.6
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 4.0e-233 811.6 591 72.4
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.2e-232 810.1 570 74.2
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.2e-232 810.1 589 71.8
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.5e-232 809.7 591 72.4
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.0e-232 809.3 600 71.3
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 7.5e-232 807.4 594 70.4
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 4.9e-231 804.7 509 80.0
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 7.1e-230 800.8 555 74.4
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 9.2e-230 800.4 593 71.8
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 2.7e-229 798.9 591 71.4
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 5.1e-228 794.7 600 71.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 5.1e-228 794.7 699 62.8
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 5.6e-227 791.2 593 71.7
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.2e-226 790.0 571 73.9
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.8e-226 788.9 615 69.3
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.5e-224 783.1 597 70.7
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 8.4e-223 777.3 597 69.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 3.2e-222 775.4 575 72.7
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 6.0e-221 771.2 575 72.0
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 8.6e-220 767.3 605 67.6
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 7.3e-219 764.2 596 67.6
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 9.6e-219 763.8 595 70.1
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 9.6e-219 763.8 575 71.5
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 6.2e-218 761.1 596 67.4
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.2e-216 756.9 596 66.8
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 7.6e-216 754.2 596 66.3
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.3e-215 753.4 512 74.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.3e-215 753.4 604 68.4
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 3.3e-211 738.8 578 69.2
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 7.3e-211 737.6 580 67.6
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 7.3e-211 737.6 595 67.9
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.4e-209 733.4 534 72.1
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.0e-209 731.9 581 66.6
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.5e-203 713.4 577 65.7
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 6.0e-197 691.4 600 63.2
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.9e-195 686.4 383 93.7
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.0e-192 676.4 523 69.0
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.3e-188 663.7 576 63.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 7.4e-187 657.9 372 93.3
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 8.4e-183 644.4 478 71.5
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.5e-179 632.9 450 72.7
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 7.9e-173 611.3 434 74.7
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.1e-169 599.0 479 66.2
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.4e-164 583.9 508 65.0
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.3e-162 577.4 539 59.6
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 9.8e-139 498.0 524 52.3
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.1e-137 492.7 573 53.1
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.3e-127 461.1 292 81.2
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.4e-121 439.1 401 62.3
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 6.8e-116 422.2 292 77.7
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.7e-114 417.5 252 83.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.6e-112 411.0 508 47.4
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.6e-109 399.8 315 68.3
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.6e-101 374.4 210 94.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.1e-96 357.5 567 42.2
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.7e-80 303.9 229 72.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.9e-78 297.7 221 70.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.8e-66 256.9 257 53.3
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.6e-59 234.2 322 41.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.5e-49 201.1 129 78.3
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 4.2e-49 200.3 266 45.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.3e-37 162.2 130 64.6
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 5.2e-31 140.2 137 57.7
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.2e-29 134.8 83 89.2
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 6.8e-23 113.2 70 88.6
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 6.8e-23 113.2 70 88.6
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 7.5e-22 109.8 70 85.7
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.3e-21 109.0 96 62.5
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.4e-20 103.6 206 38.3
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 4.5e-19 100.5 94 60.6
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.7e-18 98.6 79 65.8
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.7e-18 98.6 79 65.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.9e-18 97.8 50 86.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.8e-18 97.4 132 51.5
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 4.3e-17 94.0 59 86.4
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.6e-14 84.7 52 84.6
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 1.3e-13 82.4 51 78.4
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.0e-11 75.1 59 64.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 9.5e-09 66.2 30 100.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 9.5e-09 66.2 30 100.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.1e-08 65.1 57 56.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.3e-07 61.6 244 29.1
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 5.8e-06 57.0 77 46.8


User provided reference genes

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