Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1974.9 1011 100.0
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1969.5 1011 99.7
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1968.0 1011 99.5
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1960.7 1011 99.1
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1883.2 1011 94.4
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1872.4 1012 94.4
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1871.3 1012 94.4
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1868.2 1012 94.0
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1865.5 1011 93.9
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1865.1 1012 93.8
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1847.4 1011 92.7
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1842.0 1011 92.4
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1835.1 1011 92.5
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1813.9 1011 90.5
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1730.3 1011 86.4
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1686.4 1001 88.8
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1673.7 1012 86.5
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1623.2 1013 79.9
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1619.0 1010 79.7
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1618.2 1012 79.4
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1610.9 1012 79.2
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1609.0 1012 78.9
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1606.7 1012 79.1
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1606.7 1012 79.1
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1601.6 1011 78.6
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1597.4 1010 78.7
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1593.6 1012 78.9
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1588.9 1011 78.2
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1588.5 1015 78.3
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1559.7 1009 76.1
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1555.8 1011 76.2
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1553.1 835 93.5
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1551.6 1012 77.2
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1549.6 1011 75.9
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1546.9 1011 76.0
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1545.0 1011 75.9
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1544.3 1012 75.7
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1541.2 1012 75.6
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1539.6 1011 75.4
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1538.5 1011 75.7
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1532.7 1009 75.3
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1531.9 1041 73.8
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1531.2 1011 74.8
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1530.4 1011 75.1
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1530.4 1011 75.3
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1530.0 1011 76.8
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1528.1 1010 75.1
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1524.6 1014 74.6
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1523.8 1014 74.4
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1522.7 1009 74.6
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1520.8 1009 74.9
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1510.7 1017 74.0
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1505.7 1009 73.9
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1502.6 1011 73.8
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1502.3 1014 74.0
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1497.6 1009 73.6
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1489.6 1011 72.0
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1485.7 1009 72.1
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1483.8 1073 70.3
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1475.7 1010 72.2
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1468.8 1016 71.0
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1468.4 1009 71.5
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1466.1 1080 69.1
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1464.9 1010 71.5
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1460.7 1024 70.7
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1459.1 1015 71.8
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1459.1 1016 71.3
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1459.1 1010 71.5
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1458.7 1016 71.2
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1458.0 1043 69.3
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1458.0 1010 71.4
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1457.6 1012 72.0
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1457.6 1010 71.8
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1453.7 1009 71.9
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1451.0 1012 72.4
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1445.6 914 78.6
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1445.3 1001 71.7
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1443.7 1027 72.9
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1433.7 914 77.0
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1431.8 1009 70.7
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1427.2 1147 64.9
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1415.2 1070 67.9
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1414.8 1012 70.9
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1413.7 994 71.1
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1403.7 1009 70.6
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1392.1 1092 67.3
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1369.0 1032 70.1
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1349.7 1017 67.2
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1340.9 896 73.3
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1298.1 1016 63.4
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1292.7 933 69.0
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1280.4 1018 63.6
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1258.0 1016 62.6
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1214.1 1015 60.4
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1172.9 863 70.2
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1155.2 964 59.8
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 2.4e-310 1068.9 882 59.4
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 2.8e-303 1045.4 823 65.4
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 1.1e-299 1033.5 1026 51.3
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 6.6e-289 997.7 1018 49.9
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 6.2e-287 991.1 1017 50.0
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 3.1e-286 988.8 611 77.4
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 3.4e-285 985.3 611 76.9
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 7.6e-285 984.2 728 67.9
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 2.1e-274 949.5 704 68.0
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 8.7e-265 917.5 991 48.7
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 5.5e-251 871.7 617 69.5
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 7.9e-250 867.8 1043 44.5
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 6.5e-244 848.2 536 76.7
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 2.2e-239 833.2 508 78.9
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 9.1e-238 827.8 508 78.7
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.0e-233 814.3 507 77.1
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 1.4e-225 787.3 1022 42.9
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 4.7e-218 762.3 504 77.2
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 4.3e-203 712.6 1017 42.0
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 4.3e-179 632.9 496 66.3
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 7.1e-158 562.4 393 73.5
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 6.5e-143 512.7 546 51.1
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 2.9e-127 460.7 389 61.4
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 6.5e-127 459.5 409 57.5
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 5.5e-126 456.4 1046 30.9
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 3.0e-124 450.7 404 56.9
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 1.3e-114 418.7 311 68.5
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 4.1e-113 413.7 304 67.8
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 1.7e-111 408.3 385 59.0
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 2.2e-106 391.3 1167 27.5
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 2.3e-103 381.3 469 48.6
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 1.5e-99 368.6 280 67.9
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 3.1e-84 317.8 303 51.2
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 2.2e-82 311.6 222 71.2
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-72 277.7 290 46.9
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 7.8e-72 276.6 213 60.6
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 5.8e-67 260.4 216 65.3
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 2.8e-61 241.5 141 80.9
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 6.9e-52 210.3 177 59.3
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 1.4e-44 186.0 126 76.2
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 3.4e-43 181.4 129 70.5
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 3.7e-37 161.4 134 64.9
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 2.3e-31 142.1 183 43.7
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 4.3e-30 137.9 178 44.9
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 8.2e-29 133.7 88 75.0
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 2.0e-27 129.0 97 63.9
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 3.4e-27 128.3 79 81.0
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 2.9e-26 125.2 91 63.7
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 4.2e-25 121.3 80 76.2
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 3.6e-24 118.2 78 75.6
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 4.7e-24 117.9 76 67.1
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 4.1e-20 104.8 66 81.8
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 4.5e-19 101.3 91 62.6
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 1.2e-16 93.2 121 45.5
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 6.7e-15 87.4 98 44.9
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 1.3e-13 83.2 47 85.1
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 1.7e-13 82.8 76 53.9
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 2.2e-13 82.4 821 22.3
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 2.2e-13 82.4 123 39.0
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.4e-12 79.7 57 61.4
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 5.3e-12 77.8 125 37.6
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 2.0e-11 75.9 125 36.8
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 5.9e-11 74.3 47 78.7
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 7.7e-11 73.9 44 72.7
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 7.7e-11 73.9 125 37.6
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 2.2e-10 72.4 127 37.0
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 6.5e-10 70.9 559 21.8
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 8.5e-10 70.5 130 35.4
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 1.9e-09 69.3 135 30.4
Cfa026283 Carpinus fangiana HOM05D002786 ORTHO05D003493 2.1e-08 65.9 141 27.0
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 2.7e-08 65.5 142 31.0
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.8e-07 62.8 47 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 3.0e-07 62.0 152 28.3
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 3.0e-07 62.0 134 29.1
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 4.0e-07 61.6 129 34.1
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 4.0e-07 61.6 129 34.1
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 4.0e-07 61.6 129 34.1
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 5.2e-07 61.2 38 73.7
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 8.8e-07 60.5 142 26.8
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 1.2e-06 60.1 151 27.8
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 1.5e-06 59.7 129 30.2
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 7.5e-06 57.4 143 25.2


User provided reference genes

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