Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 5.5e-223 777.3 397 100.0
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 2.3e-221 771.9 397 99.2
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 3.7e-219 764.6 397 98.2
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 5.0e-216 754.2 397 97.5
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 3.7e-195 684.9 404 87.4
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 5.4e-194 681.0 404 86.9
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 7.1e-194 680.6 404 87.6
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 3.4e-188 661.8 406 85.0
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 5.8e-188 661.0 406 84.7
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.2e-187 659.1 406 84.5
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 3.8e-187 658.3 392 86.2
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 5.1e-184 647.9 406 84.2
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 6.6e-184 647.5 392 85.5
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 2.8e-182 642.1 409 83.4
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 5.4e-170 601.3 356 87.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 4.2e-162 575.1 418 74.4
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 5.7e-151 538.1 343 83.4
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.0e-139 500.7 396 66.9
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.8e-139 498.8 383 68.4
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-138 496.9 386 68.1
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.5e-138 496.1 397 66.5
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.5e-138 495.0 386 67.9
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.2e-137 493.8 403 65.5
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 3.9e-136 488.8 409 65.0
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.5e-135 486.9 398 65.1
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 7.4e-135 484.6 395 66.3
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.7e-134 483.4 395 63.5
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.8e-134 482.6 395 65.3
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.7e-134 482.3 398 64.6
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.4e-133 480.3 399 63.7
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 5.3e-133 478.4 401 63.6
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 9.1e-133 477.6 404 63.1
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 1.5e-132 476.9 395 65.1
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.3e-131 473.8 395 63.3
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.7e-131 473.4 395 62.3
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.7e-131 473.4 417 61.9
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 8.5e-131 471.1 400 62.2
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.2e-130 468.8 366 67.5
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 5.5e-130 468.4 408 61.0
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 7.2e-130 468.0 396 63.1
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 9.4e-130 467.6 394 63.5
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.6e-129 466.8 366 65.8
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.3e-128 463.0 366 65.3
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 5.2e-128 461.8 415 60.2
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.5e-127 460.3 391 62.4
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.0e-127 459.9 390 63.1
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 2.6e-127 459.5 408 62.3
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 4.4e-127 458.8 397 62.5
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 5.7e-127 458.4 453 55.8
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 7.4e-127 458.0 394 62.2
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 1.3e-126 457.2 392 61.5
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 8.2e-126 454.5 399 60.7
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.1e-125 454.1 398 62.1
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 1.1e-125 454.1 465 55.1
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 3.1e-125 452.6 396 60.1
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 7.0e-125 451.4 420 58.3
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.2e-124 450.7 337 71.8
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 4.5e-124 448.7 396 59.6
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.3e-123 447.2 402 60.7
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.7e-123 446.8 414 58.5
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 6.5e-123 444.9 391 60.6
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.1e-122 444.1 337 69.4
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.5e-122 443.7 396 59.6
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.9e-122 443.4 387 60.7
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 5.5e-122 441.8 392 60.5
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 1.6e-121 440.3 399 59.1
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.8e-120 436.8 397 60.5
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 2.3e-120 436.4 413 58.8
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 3.0e-120 436.0 413 59.1
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 9.7e-119 431.0 390 58.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 4.8e-118 428.7 396 59.1
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.1e-117 426.0 419 56.8
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 9.1e-117 424.5 324 71.6
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 4.5e-116 422.2 393 59.3
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 5.0e-115 418.7 408 56.1
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 5.0e-115 418.7 410 58.0
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.1e-114 417.5 398 58.3
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 1.5e-114 417.2 388 60.1
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.6e-113 413.7 345 61.7
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.4e-112 410.6 402 58.5
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.3e-112 409.8 398 55.8
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 4.0e-112 409.1 350 61.1
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 7.5e-111 404.8 366 58.5
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 9.8e-111 404.4 352 61.1
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.2e-110 403.3 404 54.5
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.8e-110 402.9 414 57.5
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.4e-109 400.6 425 53.6
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.8e-109 400.2 376 56.4
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 5.4e-109 398.7 436 53.7
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 5.5e-106 388.7 432 53.7
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 9.5e-106 387.9 339 62.5
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 1.8e-104 383.6 391 55.0
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 6.8e-104 381.7 398 53.0
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.6e-103 379.8 322 62.1
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.0e-101 371.7 369 60.7
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.6e-100 370.5 407 54.3
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.0e-99 367.9 323 62.2
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.3e-99 367.5 214 86.4
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.7e-99 367.1 408 53.2
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.7e-97 359.0 280 70.7
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 8.0e-97 358.2 330 60.0
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.2e-95 354.4 377 55.2
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.0e-95 353.6 412 51.7
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-94 350.9 279 70.3
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 7.8e-92 341.7 339 57.8
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.5e-90 336.7 280 64.3
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 9.5e-90 334.7 316 58.5
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.3e-86 324.3 304 59.2
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.2e-84 317.8 445 47.6
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.9e-75 286.2 361 47.9
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 1.3e-62 244.6 390 41.0
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 7.1e-61 238.8 203 61.6
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 5.3e-56 222.6 425 36.7
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 3.9e-51 206.5 125 82.4
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.5e-47 194.5 130 74.6
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.0e-46 191.8 104 98.1
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 6.5e-46 189.1 319 40.8
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 7.1e-45 185.7 406 33.5
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 2.1e-44 184.1 121 74.4
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.9e-27 126.7 88 75.0
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 8.5e-22 109.0 102 58.8
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.2e-20 105.1 93 60.2
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.6e-20 103.6 78 69.2
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.2e-15 88.6 156 39.1
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.2e-14 84.3 112 38.4
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 2.2e-14 84.3 74 54.1
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.8e-08 64.7 104 38.5
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 2.0e-07 61.2 143 31.5


User provided reference genes

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