Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.5e-59 232.6 117 100.0
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.5e-59 232.6 117 100.0
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.5e-59 232.6 117 100.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.5e-54 216.1 118 94.1
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 6.1e-53 210.7 118 92.4
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.4e-52 209.5 118 91.5
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 6.3e-50 200.7 117 85.5
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.5e-48 194.9 117 85.5
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.4e-44 183.0 118 80.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.3e-39 166.4 117 72.6
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.3e-39 166.4 114 73.7
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.5e-38 162.2 117 76.1
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.8e-36 156.0 114 72.8
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.4e-35 151.4 112 69.6
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.8e-34 148.7 113 70.8
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.8e-33 146.0 112 68.8
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 3.1e-33 145.2 113 68.1
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 3.1e-33 145.2 113 68.1
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 3.1e-33 145.2 113 68.1
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.1e-33 144.8 112 67.9
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 4.1e-33 144.8 112 68.8
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 4.1e-33 144.8 112 68.8
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.7e-32 142.1 120 65.0
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 3.5e-32 141.7 118 66.1
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.7e-31 139.4 114 67.5
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 5.0e-31 137.9 112 63.4
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 5.0e-31 137.9 125 63.2
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.5e-30 136.3 92 72.8
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.5e-30 136.3 121 62.0
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 4.3e-30 134.8 117 65.8
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.6e-30 134.4 124 62.9
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 7.3e-30 134.0 110 67.3
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-29 133.3 80 83.8
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.2e-29 133.3 122 61.5
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.6e-29 132.9 122 61.5
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.6e-29 132.9 113 62.8
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.6e-29 132.9 120 59.2
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.6e-29 132.9 124 62.1
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.6e-29 132.9 124 62.1
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 2.1e-29 132.5 113 65.5
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 2.8e-29 132.1 119 60.5
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 2.8e-29 132.1 111 64.9
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 4.7e-29 131.3 117 65.8
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 6.1e-29 131.0 123 60.2
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.1e-29 131.0 80 82.5
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 8.0e-29 130.6 103 67.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 1.0e-28 130.2 80 81.2
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.0e-28 130.2 118 62.7
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.4e-28 129.8 80 77.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.8e-28 129.4 115 63.5
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.3e-28 129.0 113 61.9
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.0e-28 128.6 117 62.4
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.0e-28 128.6 117 64.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 4.0e-28 128.3 97 66.0
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 5.2e-28 127.9 121 57.9
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.2e-28 127.9 117 62.4
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 5.2e-28 127.9 117 58.1
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 6.8e-28 127.5 73 84.9
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 6.8e-28 127.5 122 62.3
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 8.9e-28 127.1 113 61.9
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 8.9e-28 127.1 80 77.5
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.2e-27 126.7 119 59.7
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.2e-27 126.7 117 62.4
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 1.5e-27 126.3 107 62.6
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.5e-27 126.3 117 59.0
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.5e-27 126.3 115 60.9
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.5e-27 126.3 76 84.2
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 2.0e-27 125.9 120 58.3
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 2.0e-27 125.9 125 64.8
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.6e-27 125.6 123 60.2
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 2.6e-27 125.6 110 59.1
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 4.4e-27 124.8 121 57.0
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.8e-27 124.4 124 60.5
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.8e-27 124.4 117 62.4
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 7.5e-27 124.0 116 61.2
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 7.5e-27 124.0 116 57.8
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 9.8e-27 123.6 110 61.8
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 9.8e-27 123.6 117 56.4
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 9.8e-27 123.6 118 59.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.3e-26 123.2 119 59.7
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.7e-26 122.9 119 58.8
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.7e-26 122.9 118 58.5
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.2e-26 122.5 120 61.7
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 2.2e-26 122.5 122 55.7
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 6.4e-26 120.9 76 78.9
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 6.4e-26 120.9 93 66.7
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 6.4e-26 120.9 82 72.0
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 6.4e-26 120.9 82 72.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 6.4e-26 120.9 120 55.8
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 6.4e-26 120.9 79 74.7
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 6.4e-26 120.9 77 77.9
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.1e-25 120.2 79 75.9
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.4e-25 119.8 121 57.0
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.4e-25 119.8 121 57.0
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.4e-25 119.8 121 57.0
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.4e-25 119.0 79 74.7
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 3.2e-25 118.6 73 83.6
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.1e-25 118.2 135 54.8
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 5.4e-25 117.9 80 72.5
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 7.0e-25 117.5 118 59.3
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 9.2e-25 117.1 80 70.0
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.6e-24 116.3 76 72.4
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.6e-24 116.3 139 52.5
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 6.0e-24 114.4 71 77.5
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 79 69.6
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 1.3e-23 113.2 79 69.6
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 79 69.6
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.7e-23 112.8 72 73.6
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 2.3e-23 112.5 123 55.3
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 2.3e-23 112.5 115 57.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 3.9e-23 111.7 71 76.1
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.9e-23 111.7 108 60.2
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 2.5e-22 109.0 73 72.6
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 3.3e-22 108.6 116 50.9
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.6e-21 106.3 64 81.2
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 2.8e-21 105.5 91 61.5
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 2.8e-21 105.5 102 59.8
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.7e-21 104.8 77 70.1
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 6.2e-21 104.4 72 69.4
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 4.0e-20 101.7 117 53.0
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 2.9e-18 95.5 88 55.7
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 3.7e-18 95.1 73 63.0
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 6.4e-18 94.4 59 79.7
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.1e-17 93.6 98 54.1
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 1.1e-17 93.6 99 56.6
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.6e-16 89.7 89 56.2
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.1e-16 89.4 99 51.5
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.6e-16 88.2 65 67.7
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 6.0e-16 87.8 54 77.8
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.1e-15 84.7 94 56.4
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 8.6e-15 84.0 57 75.4
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.3e-14 82.0 78 53.8
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 7.3e-14 80.9 88 51.1
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 8.9e-12 73.9 53 64.2
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.0e-11 72.8 97 48.5
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.0e-11 72.8 44 75.0
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 3.9e-07 58.5 84 39.3
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 1.9e-06 56.2 63 46.0


User provided reference genes

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