Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 6.1e-91 337.4 166 100.0
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 5.2e-90 334.3 166 98.2
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 8.3e-88 327.0 166 97.6
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 1.1e-87 326.6 164 97.0
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 1.8e-87 325.9 164 96.3
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 1.9e-76 289.3 176 85.8
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 4.7e-75 284.6 177 84.2
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 1.3e-72 276.6 173 82.7
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 2.9e-72 275.4 173 82.7
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 1.9e-71 272.7 177 80.2
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 8.9e-66 253.8 183 73.8
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 8.9e-66 253.8 183 76.0
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 4.4e-65 251.5 180 74.4
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 8.3e-64 247.3 183 74.3
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 4.6e-62 241.5 183 68.9
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 1.5e-57 226.5 147 81.6
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 1.5e-57 226.5 147 81.6
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 1.1e-47 193.7 179 61.5
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 2.4e-47 192.6 179 61.5
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 2.4e-47 192.6 179 61.5
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 7.1e-47 191.0 185 59.5
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 1.2e-46 190.3 185 58.4
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 1.2e-46 190.3 185 58.4
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 1.6e-46 189.9 179 60.9
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 3.9e-45 185.3 182 57.7
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 5.6e-44 181.4 183 59.0
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 4.8e-43 178.3 185 57.8
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 6.2e-43 177.9 183 56.8
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 1.7e-40 169.9 178 57.3
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 6.4e-40 167.9 176 56.8
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 6.4e-40 167.9 186 52.7
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 8.4e-40 167.5 199 52.8
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 2.4e-39 166.0 187 55.6
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 5.1e-37 158.3 175 55.4
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 2.8e-35 152.5 152 59.2
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 9.0e-34 147.5 167 46.7
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 8.4e-32 141.0 168 47.0
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 1.4e-31 140.2 169 47.3
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 1.9e-31 139.8 168 47.6
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.9e-31 139.8 164 47.0
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.9e-31 139.8 166 48.2
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.2e-30 137.1 166 47.6
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 1.6e-30 136.7 169 43.2
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 6.0e-30 134.8 170 44.1
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 1.3e-29 133.7 170 45.9
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.8e-29 133.3 165 44.2
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.0e-29 132.5 170 44.7
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 5.1e-29 131.7 168 45.2
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 6.7e-29 131.3 165 44.8
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.5e-28 130.2 165 43.6
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.9e-28 129.8 165 44.8
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.3e-28 129.0 124 53.2
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.3e-28 128.6 169 46.7
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 5.7e-28 128.3 165 44.8
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.6e-28 127.5 170 43.5
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 1.6e-27 126.7 173 42.8
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 6.2e-27 124.8 168 45.2
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 6.2e-27 124.8 164 39.6
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 8.2e-27 124.4 164 43.3
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 8.2e-27 124.4 173 43.9
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.1e-26 124.0 166 44.0
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 4.0e-26 122.1 166 41.0
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 5.3e-26 121.7 164 42.7
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 5.3e-26 121.7 168 39.9
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 5.3e-26 121.7 165 41.2
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 6.9e-26 121.3 167 40.7
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 1.2e-25 120.6 166 40.4
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 4.5e-25 118.6 171 43.3
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 4.5e-25 118.6 165 41.2
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 5.8e-25 118.2 171 43.3
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.0e-24 117.5 171 42.1
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.7e-24 116.7 166 44.0
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 2.2e-24 116.3 171 42.1
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 3.8e-24 115.5 168 41.7
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 5.0e-24 115.2 166 38.6
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 6.5e-24 114.8 165 41.2
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 8.4e-24 114.4 166 41.0
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 8.4e-24 114.4 166 41.0
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 8.4e-24 114.4 165 37.6
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 8.4e-24 114.4 168 39.3
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.1e-23 114.0 165 41.2
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 1.1e-23 114.0 165 41.2
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 1.4e-23 113.6 165 42.4
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 2.5e-23 112.8 163 40.5
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 2.5e-23 112.8 163 37.4
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 3.2e-23 112.5 165 41.8
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 4.2e-23 112.1 165 37.6
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.5e-23 111.7 165 37.6
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 7.1e-23 111.3 166 41.0
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 7.1e-23 111.3 125 48.8
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 1.2e-22 110.5 192 40.1
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 1.2e-22 110.5 179 37.4
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 1.6e-22 110.2 167 38.3
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 1.6e-22 110.2 166 39.2
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.7e-22 109.4 166 40.4
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 3.5e-22 109.0 167 37.1
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 6.1e-22 108.2 165 40.0
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 1.0e-21 107.5 172 34.9
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 1.8e-21 106.7 165 37.6
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 2.3e-21 106.3 168 36.9
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 3.0e-21 105.9 168 36.9
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 5.1e-21 105.1 165 37.6
A05p13670 Brassica napus HOM05D002916 ORTHO05D003152 8.7e-21 104.4 145 48.3
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 1.9e-20 103.2 172 36.6
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 1.9e-20 103.2 168 38.1
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 3.3e-20 102.4 166 35.5
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 4.3e-20 102.1 167 37.7
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 4.3e-20 102.1 174 36.8
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 1.6e-19 100.1 194 34.5
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 6.3e-19 98.2 168 36.3
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 6.3e-19 98.2 170 33.5
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 6.3e-19 98.2 148 39.9
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 6.3e-19 98.2 148 39.9
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 1.4e-18 97.1 168 29.8
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 2.4e-18 96.3 166 34.9
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 2.4e-18 96.3 176 30.7
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 4.1e-18 95.5 165 32.1
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 6.9e-18 94.7 190 37.4
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 9.0e-18 94.4 168 35.1
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 1.2e-17 94.0 171 33.3
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 1.5e-17 93.6 164 31.1
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 2.0e-17 93.2 194 33.5
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 3.4e-17 92.4 144 43.1
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 5.9e-17 91.7 158 36.7
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 5.9e-17 91.7 170 32.9
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 1.4e-15 87.0 171 37.4
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 2.5e-15 86.3 193 29.0
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 2.5e-15 86.3 193 29.0
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 7.2e-15 84.7 176 33.0
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.6e-14 83.6 124 39.5
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 5.1e-13 78.6 165 33.9
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 8.8e-13 77.8 180 28.3
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 2.0e-12 76.6 166 31.3
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 3.3e-12 75.9 157 29.9
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 4.3e-12 75.5 117 37.6
BolC6t35258H Brassica oleracea HOM05D002916 ORTHO05D003152 1.3e-11 73.9 72 52.8
Nitab4.5_0003610g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.3e-11 73.9 169 32.5
CSS0010688 Camellia sinensis var. sinensis HOM05D002916 ORTHO05D003152 1.7e-11 73.6 111 41.4
BcaC05g24792 Brassica carinata HOM05D002916 ORTHO05D003152 2.2e-11 73.2 70 55.7
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 2.2e-11 73.2 173 31.8
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 8.2e-11 71.2 172 27.3
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 1.8e-10 70.1 175 29.7
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 3.1e-10 69.3 159 28.9
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 3.1e-10 69.3 179 29.1
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 3.1e-10 69.3 171 31.6
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 9.1e-10 67.8 103 40.8
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 2.0e-09 66.6 173 30.1
C06p01440 Brassica napus HOM05D002916 ORTHO05D003152 4.5e-09 65.5 66 50.0
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 4.5e-09 65.5 168 28.0
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 1.0e-08 64.3 170 29.4
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.0e-08 64.3 174 27.0
SEGI_19965 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 1.3e-08 63.9 189 31.2
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 1.7e-08 63.5 182 28.0
Manes.12G116500 Manihot esculenta HOM05D002916 ORTHO05D003152 3.8e-08 62.4 157 29.9
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 5.0e-08 62.0 178 28.1
BcaC08g42908 Brassica carinata HOM05D002916 ORTHO05D003152 6.5e-08 61.6 55 50.9
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 6.5e-08 61.6 163 27.6
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 6.5e-08 61.6 176 28.4
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 8.5e-08 61.2 161 28.0
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 8.5e-08 61.2 159 26.4
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 1.1e-07 60.8 178 27.0
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.4e-07 60.5 178 26.4
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 1.4e-07 60.5 170 30.0
Migut.F00158 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.9e-07 60.1 184 28.8
RcHm_v2.0_Chr1g0382771 Rosa chinensis HOM05D002916 ORTHO05D003152 1.9e-07 60.1 183 27.3
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.5e-07 59.7 173 27.2
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 2.5e-07 59.7 173 26.6
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 2.5e-07 59.7 122 34.4
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 5.5e-07 58.5 178 27.0
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 5.5e-07 58.5 180 27.2
PSO478G4364 Papaver somniferum HOM05D002916 ORTHO05D003152 7.2e-07 58.2 157 28.0
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 7.2e-07 58.2 168 27.4
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 9.4e-07 57.8 167 28.7
Manes.01G042300 Manihot esculenta HOM05D002916 ORTHO05D003152 1.6e-06 57.0 152 26.3
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 1.6e-06 57.0 167 26.9
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 2.1e-06 56.6 164 25.6
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 2.7e-06 56.2 174 27.6
PSO478G4153 Papaver somniferum HOM05D002916 ORTHO05D003152 2.7e-06 56.2 163 27.0
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 3.6e-06 55.8 171 27.5
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 3.6e-06 55.8 160 25.6
BraA05t21437Z Brassica rapa HOM05D002916 ORTHO05D003152 4.7e-06 55.5 61 52.5
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 6.1e-06 55.1 118 28.0
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 6.1e-06 55.1 167 26.9
COL.COLO4_14359 Corchorus olitorius HOM05D002916 ORTHO05D003152 7.9e-06 54.7 179 29.1


User provided reference genes

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