Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p57590 Brassica napus HOM05D000457 ORTHO05D021586 1.1e-23 112.5 56 100.0
BolC5t34416H Brassica oleracea HOM05D000457 ORTHO05D021586 1.1e-23 112.5 56 100.0
BolC2t07965H Brassica oleracea HOM05D000457 ORTHO05D021586 7.8e-22 106.3 56 96.4
BcaC05g29461 Brassica carinata HOM05D000457 ORTHO05D021586 1.2e-17 92.4 46 100.0
CARHR189570 Cardamine hirsuta HOM05D000457 ORTHO05D003394 9.8e-17 89.4 49 91.8
Sp2g23310 Schrenkiella parvula HOM05D000457 ORTHO05D003394 9.8e-17 89.4 49 91.8
AL6G35320 Arabidopsis lyrata HOM05D000457 ORTHO05D003394 6.4e-16 86.7 49 89.8
A06p34780 Brassica napus HOM05D000457 ORTHO05D003394 6.4e-16 86.7 49 87.8
BraA06t26405Z Brassica rapa HOM05D000457 ORTHO05D003394 6.4e-16 86.7 49 87.8
BcaNung01831 Brassica carinata HOM05D000457 ORTHO05D003394 4.1e-15 84.0 49 85.7
C07p43720 Brassica napus HOM05D000457 ORTHO05D003394 4.1e-15 84.0 49 85.7
BolC7t44902H Brassica oleracea HOM05D000457 ORTHO05D003394 4.1e-15 84.0 49 85.7
Thhalv10003544m.g Eutrema salsugineum HOM05D000457 ORTHO05D000560 7.0e-15 83.2 49 85.7
BcaNung01199 Brassica carinata HOM05D000457 ORTHO05D003394 9.2e-15 82.8 49 85.7
Carub.0006s2172 Capsella rubella HOM05D000457 ORTHO05D003394 1.2e-14 82.4 49 83.7
AT5G24000 Arabidopsis thaliana HOM05D000457 ORTHO05D003394 1.6e-14 82.0 49 85.7
Aa31LG11G3290 Aethionema arabicum HOM05D000457 ORTHO05D003394 5.0e-13 77.0 49 75.5
Aa31sc89G70 Aethionema arabicum HOM05D000457 ORTHO05D003394 9.5e-12 72.8 47 74.5
BcaC03g14417 Brassica carinata HOM05D000457 ORTHO05D021586 3.6e-11 70.9 36 100.0
BolC3t19599H Brassica oleracea HOM05D000457 ORTHO05D021586 3.6e-11 70.9 36 100.0
THA.LOC104798698 Tarenaya hassleriana HOM05D000457 ORTHO05D003394 2.3e-10 68.2 49 65.3
Ah.07g206640 Amaranthus hybridus HOM05D000457 ORTHO05D003394 7.5e-09 63.2 49 61.2
Potri.004G079300 Populus trichocarpa HOM05D000457 ORTHO05D003394 7.5e-09 63.2 49 61.2
Sabra04G0052700 Salix brachista HOM05D000457 ORTHO05D003394 7.5e-09 63.2 49 61.2
AUR62021132 Chenopodium quinoa HOM05D000457 ORTHO05D003394 1.3e-08 62.4 49 59.2
AUR62031411 Chenopodium quinoa HOM05D000457 ORTHO05D003394 1.3e-08 62.4 49 59.2
MSTRG.8716 Avicennia marina HOM05D000457 ORTHO05D003394 1.7e-08 62.0 49 59.2
Manes.06G151700 Manihot esculenta HOM05D000457 ORTHO05D003394 1.7e-08 62.0 49 57.1
Sc13g0009090 Simmondsia chinensis HOM05D000457 ORTHO05D003394 2.2e-08 61.6 49 59.2
Atru.chr1.367 Acer truncatum HOM05D000457 ORTHO05D003394 3.7e-08 60.8 49 57.1
Atru.chr1.383 Acer truncatum HOM05D000457 ORTHO05D003394 3.7e-08 60.8 49 57.1
Atru.ctg97_1.12 Acer truncatum HOM05D000457 ORTHO05D003394 3.7e-08 60.8 49 57.1
Thecc.03G182900 Theobroma cacao HOM05D000457 ORTHO05D003394 3.7e-08 60.8 49 57.1
FvH4_7g30150 Fragaria vesca HOM05D000457 ORTHO05D003394 4.9e-08 60.5 49 55.1
FAN06G0501 Fragaria x ananassa HOM05D000457 ORTHO05D000560 4.9e-08 60.5 49 55.1
FAN06G1968 Fragaria x ananassa HOM05D000457 ORTHO05D000560 4.9e-08 60.5 49 55.1
Ciclev10004922m.g Citrus clementina HOM05D000457 ORTHO05D003394 6.4e-08 60.1 49 57.1
COL.COLO4_28012 Corchorus olitorius HOM05D000457 ORTHO05D003394 6.4e-08 60.1 49 55.1
TAR375G0322 Trochodendron aralioides HOM05D000457 ORTHO05D003394 6.4e-08 60.1 48 60.4
Actinidia34150 Actinidia chinensis HOM05D000457 ORTHO05D000560 8.3e-08 59.7 49 57.1
FAN01G2124 Fragaria x ananassa HOM05D000457 ORTHO05D000560 8.3e-08 59.7 49 55.1
Manes.14G023100 Manihot esculenta HOM05D000457 ORTHO05D003394 8.3e-08 59.7 49 57.1
Sc19g0001320 Simmondsia chinensis HOM05D000457 ORTHO05D003394 8.3e-08 59.7 43 65.1
GSVIVG01028872001 Vitis vinifera HOM05D000457 ORTHO05D003394 8.3e-08 59.7 49 55.1
Migut.F00298 Erythranthe guttata HOM05D000457 ORTHO05D003394 1.1e-07 59.3 49 59.2
DCAR_010661 Daucus carota HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 55.1
Migut.F00299 Erythranthe guttata HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 57.1
FvH4_7g30151 Fragaria vesca HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 57.1
FAN03G2403 Fragaria x ananassa HOM05D000457 ORTHO05D000560 1.4e-07 58.9 49 53.1
FAN03G3039 Fragaria x ananassa HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 53.1
FAN10G0248 Fragaria x ananassa HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 57.1
FAN10G1621 Fragaria x ananassa HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 57.1
Gorai.006G051100 Gossypium raimondii HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 59.2
Potri.017G142841 Populus trichocarpa HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 57.1
RcHm_v2.0_Chr1g0378191 Rosa chinensis HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 57.1
RcHm_v2.0_Chr1g0378201 Rosa chinensis HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 57.1
PGSC0003DMG400030893 Solanum tuberosum HOM05D000457 ORTHO05D003394 1.4e-07 58.9 49 57.1
GSVIVG01028873001 Vitis vinifera HOM05D000457 ORTHO05D000560 1.4e-07 58.9 49 53.1
Gohir.A09G039600 Gossypium hirsutum HOM05D000457 ORTHO05D003394 1.9e-07 58.5 49 59.2
Solyc07g007970.3 Solanum lycopersicum HOM05D000457 ORTHO05D003394 1.9e-07 58.5 49 57.1
Sopen07g003850 Solanum pennellii HOM05D000457 ORTHO05D003394 1.9e-07 58.5 49 57.1
Aa31LG3G8890 Aethionema arabicum HOM05D000457 ORTHO05D003394 2.4e-07 58.2 49 57.1
AL8G27000 Arabidopsis lyrata HOM05D000457 ORTHO05D003394 2.4e-07 58.2 49 55.1
AT5G52540 Arabidopsis thaliana HOM05D000457 ORTHO05D003394 2.4e-07 58.2 49 55.1
PGR142G2461 Punica granatum HOM05D000457 ORTHO05D003394 2.4e-07 58.2 49 53.1
unitig_37.g12535 Utricularia gibba HOM05D000457 ORTHO05D003394 2.4e-07 58.2 49 55.1
A10p10150 Brassica napus HOM05D000457 ORTHO05D003394 3.2e-07 57.8 49 55.1
BraA10t43095Z Brassica rapa HOM05D000457 ORTHO05D003394 3.2e-07 57.8 49 55.1
CARHR265520 Cardamine hirsuta HOM05D000457 ORTHO05D003394 3.2e-07 57.8 49 55.1
Gohir.A11G011700 Gossypium hirsutum HOM05D000457 ORTHO05D003394 3.2e-07 57.8 49 53.1
Gohir.D09G044100 Gossypium hirsutum HOM05D000457 ORTHO05D003394 3.2e-07 57.8 49 57.1
Gohir.D11G010900 Gossypium hirsutum HOM05D000457 ORTHO05D003394 3.2e-07 57.8 49 53.1
Gorai.007G012400 Gossypium raimondii HOM05D000457 ORTHO05D003394 3.2e-07 57.8 49 53.1
Nitab4.5_0000921g0060 Nicotiana tabacum HOM05D000457 ORTHO05D003394 3.2e-07 57.8 49 57.1
CSS0005679 Camellia sinensis var. sinensis HOM05D000457 ORTHO05D003394 4.1e-07 57.4 48 56.2
Dinv28392 Davidia involucrata HOM05D000457 ORTHO05D003394 4.1e-07 57.4 48 56.2
Thhalv10013447m.g Eutrema salsugineum HOM05D000457 ORTHO05D003394 4.1e-07 57.4 49 55.1
HanXRQChr14g0462501 Helianthus annuus HOM05D000457 ORTHO05D003394 4.1e-07 57.4 49 57.1
Lj1A1004G79 Lonicera japonica HOM05D000457 ORTHO05D003394 4.1e-07 57.4 49 53.1
RcHm_v2.0_Chr1g0378181 Rosa chinensis HOM05D000457 ORTHO05D003394 4.1e-07 57.4 49 55.1
EL10Ac3g05433 Beta vulgaris HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 51.0
BcaB05g21964 Brassica carinata HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
BcaB08g35609 Brassica carinata HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
BcaC03g14523 Brassica carinata HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
BcaC04g20564 Brassica carinata HOM05D000457 ORTHO05D003394 5.4e-07 57.0 48 56.2
BNapus_Darmor_BZH_scaffold_232p00110 Brassica napus HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
BolC2t08095H Brassica oleracea HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
Carub.0008s1266 Capsella rubella HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
CAN.G672.11 Capsicum annuum HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 57.1
CiPaw.06G002800 Carya illinoinensis HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
QL09p013036 Quercus lobata HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
Sp6g14740 Schrenkiella parvula HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 55.1
Thecc.03G183100 Theobroma cacao HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 57.1
Thecc.K0007500 Theobroma cacao HOM05D000457 ORTHO05D003394 5.4e-07 57.0 49 57.1
A02p11760 Brassica napus HOM05D000457 ORTHO05D003394 7.0e-07 56.6 49 53.1
BraA02t06241Z Brassica rapa HOM05D000457 ORTHO05D003394 7.0e-07 56.6 49 53.1
COL.COLO4_28011 Corchorus olitorius HOM05D000457 ORTHO05D003394 7.0e-07 56.6 49 57.1
MELO3C006943.2 Cucumis melo HOM05D000457 ORTHO05D003394 7.0e-07 56.6 49 53.1
CsaV3_3G017390 Cucumis sativus L. HOM05D000457 ORTHO05D003394 7.0e-07 56.6 49 53.1
Duzib084G1337 Durio zibethinus HOM05D000457 ORTHO05D003394 7.0e-07 56.6 49 55.1
Nn1g01618 Nelumbo nucifera HOM05D000457 ORTHO05D003394 7.0e-07 56.6 49 53.1
ECA238G1564 Erigeron canadensis HOM05D000457 ORTHO05D003394 9.2e-07 56.2 49 55.1
Psat1g092760 Pisum sativum HOM05D000457 ORTHO05D003394 9.2e-07 56.2 50 50.0
TWI23G1296 Tripterygium wilfordii HOM05D000457 ORTHO05D003394 9.2e-07 56.2 49 55.1
ClCG01G000960 Citrullus lanatus HOM05D000457 ORTHO05D003394 1.2e-06 55.8 49 53.1
ClCG05G008310 Citrullus lanatus HOM05D000457 ORTHO05D003394 1.2e-06 55.8 49 51.0
MELO3C005835.2 Cucumis melo HOM05D000457 ORTHO05D003394 1.2e-06 55.8 49 53.1
CsaV3_5G001100 Cucumis sativus L. HOM05D000457 ORTHO05D003394 1.2e-06 55.8 49 53.1
Oeu045367.2 Olea europaea HOM05D000457 ORTHO05D003394 1.2e-06 55.8 49 55.1
arahy.Tifrunner.gnm1.ann1.C2WNXA Arachis hypogaea HOM05D000457 ORTHO05D003394 1.6e-06 55.5 45 57.8
arahy.Tifrunner.gnm1.ann1.JU0NWU Arachis hypogaea HOM05D000457 ORTHO05D003394 1.6e-06 55.5 45 57.8
EL10Ac3g05435 Beta vulgaris HOM05D000457 ORTHO05D003394 1.6e-06 55.5 50 54.0
Ciclev10004463m.g Citrus clementina HOM05D000457 ORTHO05D003394 1.6e-06 55.5 49 53.1
Cc02_g02460 Coffea canephora HOM05D000457 ORTHO05D003394 1.6e-06 55.5 45 60.0
Hma1.2p1_0274F.1_g110220 Hydrangea macrophylla HOM05D000457 ORTHO05D003394 1.6e-06 55.5 49 55.1
Lsat_1_v5_gn_2_131201 Lactuca sativa HOM05D000457 ORTHO05D003394 1.6e-06 55.5 49 49.0
Hund04781 Selenicereus undatus HOM05D000457 ORTHO05D003394 1.6e-06 55.5 49 53.1
HPP92_005371 Vanilla planifolia HOM05D000457 ORTHO05D003394 1.6e-06 55.5 49 53.1
HPP92_005431 Vanilla planifolia HOM05D000457 ORTHO05D003394 1.6e-06 55.5 49 53.1
Atru.chr1.368 Acer truncatum HOM05D000457 ORTHO05D003394 2.1e-06 55.1 49 53.1
Atru.chr1.384 Acer truncatum HOM05D000457 ORTHO05D003394 2.1e-06 55.1 49 53.1
Prupe.2G300000 Prunus persica HOM05D000457 ORTHO05D003394 2.1e-06 55.1 49 55.1
Sp6g14720 Schrenkiella parvula HOM05D000457 ORTHO05D003394 2.1e-06 55.1 48 56.2
Hund11724 Selenicereus undatus HOM05D000457 ORTHO05D003394 2.1e-06 55.1 49 55.1
HPP92_002732 Vanilla planifolia HOM05D000457 ORTHO05D003394 2.1e-06 55.1 50 52.0
Cpa.g.sc107.100 Carica papaya HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 51.0
CDE02G1566 Ceratophyllum demersum HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 55.1
Haze_00036 Corylus avellana HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 51.0
MD01G1207400 Malus domestica HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 53.1
Nn1g01617 Nelumbo nucifera HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 51.0
Oeu060458.1 Olea europaea HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 51.0
Sed0024505 Sechium edule HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 49.0
THA.LOC104811962 Tarenaya hassleriana HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 53.1
TAR375G0816 Trochodendron aralioides HOM05D000457 ORTHO05D003394 2.7e-06 54.7 49 55.1
Ah.07g206660 Amaranthus hybridus HOM05D000457 ORTHO05D003394 3.5e-06 54.3 50 48.0
BcaB01g04204 Brassica carinata HOM05D000457 ORTHO05D003394 3.5e-06 54.3 49 53.1
A03p15630 Brassica napus HOM05D000457 ORTHO05D003394 3.5e-06 54.3 49 53.1
BraA03t10856Z Brassica rapa HOM05D000457 ORTHO05D003394 3.5e-06 54.3 49 53.1
Eucgr.K00290 Eucalyptus grandis HOM05D000457 ORTHO05D003394 3.5e-06 54.3 43 58.1
Lalb_Chr02g0141211 Lupinus albus HOM05D000457 ORTHO05D003394 3.5e-06 54.3 49 55.1
Os06g0107100 Oryza sativa ssp. japonica HOM05D000457 ORTHO05D003394 3.5e-06 54.3 43 60.5
Lj5g0020891 Lotus japonicus HOM05D000457 ORTHO05D003394 4.6e-06 53.9 49 49.0
Lalb_Chr01g0009471 Lupinus albus HOM05D000457 ORTHO05D003394 4.6e-06 53.9 50 50.0
PGR042G2678 Punica granatum HOM05D000457 ORTHO05D003394 4.6e-06 53.9 49 55.1
Peaxi162Scf00023g00825 Petunia axillaris HOM05D000457 ORTHO05D003394 6.0e-06 53.5 49 49.0
QL09p012996 Quercus lobata HOM05D000457 ORTHO05D003394 6.0e-06 53.5 47 55.3
CANSAT21G2397 Cannabis sativa HOM05D000457 ORTHO05D003394 7.8e-06 53.1 49 46.9
Eucgr.A02749 Eucalyptus grandis HOM05D000457 ORTHO05D000560 7.8e-06 53.1 49 55.1
MBI04_g36819_MAGBIO Magnolia biondii HOM05D000457 ORTHO05D003394 7.8e-06 53.1 50 48.0
Rhsim03G0190300 Rhododendron simsii HOM05D000457 ORTHO05D003394 7.8e-06 53.1 48 54.2
vmacro06636 Vaccinium macrocarpon HOM05D000457 ORTHO05D003394 7.8e-06 53.1 49 51.0


User provided reference genes

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