Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 9.0e-179 630.2 326 100.0
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.5e-178 629.4 326 99.4
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 9.3e-168 593.6 326 94.5
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 2.5e-165 585.5 331 93.1
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 2.1e-164 582.4 326 92.9
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 1.2e-146 523.5 332 82.5
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 7.2e-144 514.2 332 80.4
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 5.2e-142 508.1 332 79.5
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 9.7e-141 503.8 340 80.0
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.6e-138 496.5 332 80.1
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 4.5e-138 495.0 329 81.2
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 1.1e-136 490.3 341 78.6
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 9.4e-136 487.3 337 78.6
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 6.1e-135 484.6 337 77.4
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 4.4e-133 478.4 340 77.1
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 4.7e-119 431.8 346 70.5
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 1.3e-108 397.1 332 68.1
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 9.8e-101 370.9 346 60.4
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 8.9e-94 347.8 245 76.7
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 8.4e-76 288.1 322 51.6
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.2e-75 286.2 327 49.8
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 7.1e-75 285.0 350 49.4
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 1.6e-74 283.9 351 46.7
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 1.6e-74 283.9 351 46.4
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 5.1e-73 278.9 348 48.9
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 4.3e-72 275.8 343 48.7
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 9.6e-72 274.6 354 47.2
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.6e-71 273.9 350 45.4
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 2.1e-71 273.5 332 50.6
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 3.6e-71 272.7 340 46.5
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 3.6e-71 272.7 342 49.1
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 8.1e-71 271.6 338 48.2
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 4.0e-70 269.2 349 48.4
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 5.3e-70 268.9 349 45.8
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 6.9e-70 268.5 352 46.6
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 2.6e-69 266.5 339 43.4
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 4.5e-69 265.8 336 45.5
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 4.5e-69 265.8 350 45.1
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 9.9e-69 264.6 343 46.4
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 9.9e-69 264.6 337 46.9
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.7e-68 263.8 345 46.4
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 8.4e-68 261.5 339 44.0
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.9e-67 260.4 335 46.0
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 3.2e-67 259.6 339 46.9
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.4e-67 258.8 348 48.0
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 7.1e-67 258.5 348 44.3
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 7.1e-67 258.5 347 45.8
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 9.3e-67 258.1 346 45.1
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 2.1e-66 256.9 334 44.0
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 2.7e-66 256.5 346 47.4
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.6e-66 255.8 348 46.6
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 4.6e-66 255.8 353 45.6
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 7.9e-66 255.0 348 46.6
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.3e-65 254.2 345 45.8
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 1.8e-65 253.8 341 44.9
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 3.0e-65 253.1 337 44.2
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 3.9e-65 252.7 342 46.2
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.5e-64 250.8 343 43.7
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 4.3e-64 249.2 349 41.8
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 5.6e-64 248.8 346 41.9
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 7.4e-64 248.4 349 44.4
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 3.7e-63 246.1 340 45.3
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 8.1e-63 245.0 346 44.8
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.4e-62 244.2 354 41.8
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 3.1e-62 243.0 340 44.7
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 1.3e-60 237.7 350 44.0
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 3.8e-60 236.1 348 44.5
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 4.9e-60 235.7 327 45.6
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 4.9e-60 235.7 394 42.4
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 5.5e-59 232.3 327 42.2
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 3.5e-58 229.6 343 42.0
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.0e-57 228.0 346 42.5
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.5e-56 224.2 342 43.9
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.5e-56 224.2 339 41.0
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 2.1e-55 220.3 349 39.0
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 2.4e-54 216.9 341 42.5
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 3.1e-54 216.5 351 39.0
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 5.3e-54 215.7 340 40.3
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 9.0e-54 214.9 327 39.1
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 4.5e-53 212.6 322 41.9
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 4.5e-53 212.6 388 38.7
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.3e-52 211.1 362 38.1
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 3.8e-52 209.5 342 39.2
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 2.5e-51 206.8 332 39.8
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 7.9e-50 201.8 308 44.2
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.0e-49 201.4 332 37.7
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 3.0e-49 199.9 341 41.3
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 5.1e-49 199.1 322 39.1
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.5e-48 196.8 254 48.8
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.7e-48 195.7 306 38.6
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.6e-47 194.1 324 37.7
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 2.2e-47 193.7 330 38.8
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 1.8e-46 190.7 378 39.2
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 3.1e-46 189.9 322 39.4
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 5.3e-46 189.1 243 44.4
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 7.6e-45 185.3 310 36.8
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.0e-44 184.9 280 38.2
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 2.9e-44 183.3 358 34.9
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 1.4e-43 181.0 187 52.4
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 2.5e-43 180.3 339 33.6
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.2e-43 179.9 267 42.7
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 5.5e-43 179.1 352 36.6
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 3.9e-41 172.9 452 31.9
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 7.4e-40 168.7 351 31.9
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.1e-38 164.9 304 36.8
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 6.9e-38 162.2 295 38.0
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 9.1e-38 161.8 297 37.0
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.0e-37 160.6 197 46.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-36 157.9 263 36.9
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 2.9e-36 156.8 309 33.7
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 7.2e-35 152.1 334 35.3
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 3.0e-33 146.7 250 40.0
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 2.0e-32 144.1 204 41.2
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 5.7e-32 142.5 205 43.9
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.7e-31 139.8 285 33.0
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 2.4e-30 137.1 100 76.0
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.5e-27 127.1 198 42.4
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 3.3e-24 116.7 268 35.8
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 2.4e-22 110.5 406 25.9
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 7.0e-22 109.0 121 48.8
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 7.0e-22 109.0 384 26.3
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 5.9e-21 105.9 262 35.5
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 5.9e-21 105.9 262 35.5
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 5.9e-21 105.9 262 35.5
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 1.1e-19 101.7 213 32.9
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 1.9e-19 100.9 242 34.7
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 2.1e-18 97.4 217 36.4
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.6e-16 90.5 169 33.7
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 3.3e-16 90.1 198 30.8
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 8.2e-15 85.5 90 50.0
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-14 84.0 161 35.4
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 1.6e-13 81.3 150 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 4.5e-13 79.7 178 28.7
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 3.8e-12 76.6 116 35.3
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.4e-09 68.2 66 51.5
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 5.2e-09 66.2 130 32.3
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 6.8e-09 65.9 66 50.0
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.5e-08 64.7 45 64.4
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 3.4e-08 63.5 65 56.9
Sabra18G0125400 Salix brachista HOM05D000311 ORTHO05D000183 1.4e-06 58.2 35 74.3
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 2.4e-06 57.4 38 57.9
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 3.1e-06 57.0 364 20.9
Sabra18G0129100 Salix brachista HOM05D000311 ORTHO05D000183 5.4e-06 56.2 35 71.4


User provided reference genes

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