Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 8.2e-171 603.6 298 100.0
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 8.2e-171 603.6 298 100.0
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 9.4e-159 563.5 298 95.3
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 2.0e-156 555.8 298 92.3
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.8e-155 552.0 301 91.7
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 5.9e-145 517.7 294 87.1
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.6e-142 508.4 301 83.7
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 8.1e-134 480.7 301 79.4
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 5.2e-133 478.0 301 79.4
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 3.7e-131 471.9 299 79.9
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 4.3e-127 458.4 276 81.2
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.1e-122 441.8 295 77.3
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.6e-113 411.8 268 75.0
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.3e-110 403.7 272 72.4
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.7e-105 386.0 282 65.6
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.5e-100 370.2 226 80.5
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 6.4e-99 364.8 295 61.0
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.6e-97 358.6 287 67.6
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.0e-96 355.9 293 59.7
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 6.7e-96 354.8 293 59.4
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.9e-95 353.2 285 66.7
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 3.3e-95 352.4 307 58.3
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.3e-95 352.4 293 59.0
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 6.2e-94 348.2 294 59.2
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.8e-93 346.7 293 59.4
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.4e-93 346.3 327 53.5
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 6.9e-93 344.7 293 57.0
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 2.6e-92 342.8 285 60.4
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 4.5e-92 342.0 290 58.6
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.9e-91 339.3 302 57.0
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 8.4e-91 337.8 283 58.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.1e-90 337.4 289 58.1
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.1e-90 337.4 285 58.2
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 2.5e-90 336.3 284 57.4
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 4.2e-90 335.5 292 57.2
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 4.2e-90 335.5 293 57.7
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 5.5e-90 335.1 284 56.3
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 5.5e-90 335.1 284 56.3
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 5.5e-90 335.1 291 58.4
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.7e-89 332.8 286 63.6
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 6.0e-89 331.6 294 55.8
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.0e-88 330.9 294 59.2
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.0e-88 330.9 308 55.5
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.0e-88 329.3 306 54.6
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 3.9e-88 328.9 285 55.4
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 3.9e-88 328.9 288 54.5
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 3.3e-87 325.9 293 56.3
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 3.3e-87 325.9 291 56.4
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.3e-87 325.5 294 56.5
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 4.3e-87 325.5 295 54.6
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 8.2e-86 321.2 280 58.6
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.1e-85 320.9 286 58.7
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.4e-85 320.5 304 53.9
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 1.4e-85 320.5 286 55.2
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 4.1e-85 318.9 274 58.4
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 5.3e-85 318.5 296 54.4
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.2e-84 317.4 286 56.3
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.2e-84 317.4 292 54.1
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.2e-84 317.4 276 58.0
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.2e-84 317.4 314 53.2
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.2e-84 317.4 285 55.4
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.5e-84 317.0 280 56.1
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 7.6e-84 314.7 274 56.9
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 1.7e-83 313.5 275 56.4
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 5.0e-83 312.0 280 58.2
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 5.0e-83 312.0 280 58.2
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 8.4e-83 311.2 303 51.2
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.1e-82 310.8 305 52.8
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-82 310.8 282 57.1
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.1e-82 310.8 288 54.2
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.1e-82 310.8 289 54.0
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.4e-82 310.5 283 58.3
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.4e-82 310.5 294 54.1
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.4e-82 310.5 294 54.1
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.5e-82 309.7 282 57.1
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.5e-82 309.7 286 54.2
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 5.5e-82 308.5 287 56.8
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 7.2e-82 308.1 299 53.5
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 2.1e-81 306.6 314 50.6
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.8e-80 303.5 285 59.6
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.8e-80 303.5 284 54.6
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.8e-80 303.5 308 52.3
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 3.0e-80 302.8 284 55.3
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 8.7e-80 301.2 192 76.0
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.9e-79 300.1 288 52.1
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.3e-79 298.9 250 59.2
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.6e-78 297.0 267 56.2
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 4.8e-78 295.4 296 54.7
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.4e-77 293.9 289 52.2
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 3.4e-76 289.3 351 46.4
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.0e-75 287.7 305 50.5
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 6.5e-75 285.0 289 50.5
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 1.4e-74 283.9 284 56.0
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.2e-74 282.3 213 65.7
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 3.0e-72 276.2 294 50.0
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 2.6e-71 273.1 288 48.6
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 3.3e-71 272.7 284 50.0
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.7e-70 269.2 239 57.3
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.8e-70 268.9 292 50.0
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 6.3e-70 268.5 263 52.1
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 8.2e-70 268.1 282 49.6
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.8e-69 266.9 268 51.1
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.3e-67 260.8 303 48.5
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.7e-67 260.4 289 50.2
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 5.0e-67 258.8 273 50.2
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 7.2e-66 255.0 187 71.1
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.7e-65 253.1 286 47.6
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 2.0e-63 246.9 214 57.0
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 9.7e-63 244.6 251 51.0
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 1.3e-62 244.2 211 56.4
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 7.0e-61 238.4 213 54.5
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.1e-58 231.1 304 45.4
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 5.5e-58 228.8 217 52.5
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 4.7e-57 225.7 270 45.2
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 6.1e-57 225.3 302 43.0
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 4.5e-52 209.1 261 49.4
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 1.3e-51 207.6 224 51.3
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 1.9e-50 203.8 303 40.6
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 2.6e-47 193.4 300 39.0
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.2e-46 190.3 273 38.8
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 1.8e-45 187.2 300 38.0
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.1e-45 186.0 164 56.1
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.7e-43 180.6 204 46.6
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.5e-42 176.8 299 38.1
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 5.5e-42 175.6 136 61.0
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.0e-40 171.4 210 48.1
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 1.5e-39 167.5 164 52.4
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 4.4e-39 166.0 166 48.2
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 1.1e-37 161.4 131 61.1
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 4.5e-36 156.0 99 76.8
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.1e-33 147.1 102 68.6
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 2.1e-33 147.1 166 48.2
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.8e-32 144.1 174 47.1
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.3e-27 127.9 107 62.6
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.6e-27 125.6 107 62.6
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 6.2e-25 119.0 118 50.8
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 2.0e-23 114.0 58 89.7
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 2.0e-23 114.0 58 89.7
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.4e-21 107.8 248 33.1
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 3.0e-19 100.1 109 46.8
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 1.6e-17 94.4 82 58.5
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.1e-17 94.0 93 52.7
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 4.0e-16 89.7 345 25.8
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.2e-13 80.1 58 69.0
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 9.2e-13 78.6 59 62.7
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 1.2e-12 78.2 106 42.5
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 8.6e-11 72.0 202 29.2
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 4.0e-08 63.2 247 24.7
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 6.8e-08 62.4 217 25.3
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.2e-07 61.6 44 63.6
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 4.4e-07 59.7 151 30.5
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 7.6e-07 58.9 218 24.8
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 1.7e-06 57.8 251 24.3
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.7e-06 57.8 213 24.4
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 2.2e-06 57.4 199 26.1
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 2.2e-06 57.4 141 28.4
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 4.9e-06 56.2 227 25.6
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 4.9e-06 56.2 227 25.6
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 4.9e-06 56.2 213 24.4
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 6.4e-06 55.8 173 26.6


User provided reference genes

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