Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 1.4e-90 336.3 166 100.0
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 1.4e-90 336.3 166 100.0
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 1.4e-90 336.3 166 100.0
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 2.7e-86 322.0 166 95.2
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 2.7e-86 322.0 166 95.2
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 2.7e-86 322.0 166 95.2
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 2.7e-86 322.0 166 95.8
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 5.9e-86 320.9 166 95.2
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 5.9e-86 320.9 166 95.2
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 2.3e-85 318.9 166 94.6
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 3.9e-85 318.2 166 94.6
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 3.9e-85 318.2 166 94.6
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 3.6e-83 311.6 160 95.6
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 6.0e-78 294.3 166 87.3
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 6.0e-78 294.3 166 87.3
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 8.0e-75 283.9 166 83.1
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 7.0e-71 270.8 152 86.2
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 6.0e-70 267.7 165 80.6
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 1.6e-67 259.6 165 78.2
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 5.4e-63 244.6 160 75.6
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 5.4e-63 244.6 160 75.6
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 7.1e-63 244.2 165 73.9
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 7.1e-63 244.2 165 73.9
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 7.1e-63 244.2 165 73.9
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 6.6e-61 237.7 165 72.1
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 6.6e-61 237.7 165 72.1
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 6.6e-61 237.7 165 72.1
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.6e-49 199.1 161 62.7
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.7e-48 196.4 162 61.1
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.8e-48 195.3 161 59.6
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-47 193.7 160 60.0
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.4e-47 192.6 161 57.1
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.1e-47 191.0 160 58.8
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-44 183.7 165 60.6
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 1.5e-44 183.3 161 56.5
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 1.3e-43 180.3 161 58.4
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 1.3e-43 180.3 161 58.4
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 4.8e-43 178.3 165 60.0
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 6.2e-43 177.9 161 57.1
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 6.9e-42 174.5 168 57.1
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 4.9e-40 168.3 88 85.2
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.7e-37 157.5 165 50.3
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 6.2e-35 151.4 155 51.6
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 2.6e-33 146.0 165 46.7
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.5e-31 138.3 161 49.1
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.3e-31 137.5 165 45.5
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.2e-30 137.1 161 49.1
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.6e-30 136.7 165 44.8
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.6e-30 136.7 161 47.8
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.5e-30 135.6 161 48.4
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.3e-29 132.9 161 45.3
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 4.3e-28 128.6 117 54.7
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.7e-28 128.3 162 48.8
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-27 127.1 161 45.3
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-26 123.2 209 36.8
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.0e-26 120.9 144 44.4
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 1.2e-25 120.6 62 88.7
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.5e-23 111.7 161 41.6
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 7.1e-23 111.3 150 43.3
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.8e-21 106.7 161 39.1
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 7.4e-20 101.3 122 38.5
BcaC08g44685 Brassica carinata HOM05D007923 ORTHO05D009651 1.1e-18 97.4 69 75.4
C05p55910 Brassica napus HOM05D007923 ORTHO05D009651 5.3e-18 95.1 67 73.1
BolC5t34259H Brassica oleracea HOM05D007923 ORTHO05D009651 5.3e-18 95.1 67 73.1
BcaC05g29303 Brassica carinata HOM05D007923 ORTHO05D009651 2.6e-17 92.8 50 96.0
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.4e-17 92.4 126 39.7
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.1e-15 87.4 113 37.2
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.4e-13 80.5 153 33.3
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 5.1e-13 78.6 104 38.5
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 6.7e-13 78.2 90 38.9
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.5e-12 77.0 127 32.3
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.3e-12 75.5 151 29.8
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.8e-11 72.8 111 30.6
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 6.3e-11 71.6 79 39.2
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 4.1e-10 68.9 152 28.9
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 4.1e-10 68.9 82 40.2
PGR031G1959 Punica granatum HOM05D007923 ORTHO05D009651 1.3e-08 63.9 111 31.5
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 1.3e-08 63.9 79 39.2
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 1.9e-07 60.1 79 38.0
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.9e-07 60.1 87 35.6
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 7.2e-07 58.2 75 33.3
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 9.4e-07 57.8 82 36.6
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 2.1e-06 56.6 113 28.3
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 2.7e-06 56.2 121 24.8
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 7.9e-06 54.7 81 29.6


User provided reference genes

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