Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 7.4e-95 350.5 175 100.0
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 1.7e-67 259.6 128 100.0
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.4e-37 160.2 105 75.2
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 3.9e-35 152.1 105 70.5
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 5.0e-35 151.8 105 69.5
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 2.5e-34 149.4 114 67.5
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 2.5e-34 149.4 114 67.5
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 2.5e-34 149.4 114 67.5
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 5.6e-34 148.3 100 74.0
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 7.3e-34 147.9 97 72.2
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 7.3e-34 147.9 97 72.2
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.2e-33 147.1 97 71.1
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 3.6e-33 145.6 97 72.2
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.4e-32 143.7 106 66.0
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.9e-29 133.3 89 70.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.5e-26 123.6 104 56.7
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.9e-26 123.2 104 56.7
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.5e-26 122.9 89 67.4
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.2e-25 120.6 110 55.5
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.6e-25 120.2 92 67.4
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 4.7e-25 118.6 97 56.7
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 8.1e-25 117.9 93 59.1
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 1.8e-24 116.7 93 59.1
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 2.3e-24 116.3 90 60.0
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 3.1e-24 115.9 93 58.1
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 3.1e-24 115.9 90 58.9
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 3.1e-24 115.9 100 56.0
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 5.2e-24 115.2 90 58.9
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 6.8e-24 114.8 90 58.9
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 8.9e-24 114.4 105 54.3
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 8.9e-24 114.4 103 55.3
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 8.9e-24 114.4 92 58.7
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 1.5e-23 113.6 90 60.0
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.5e-23 113.6 95 57.9
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 2.0e-23 113.2 90 60.0
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 2.0e-23 113.2 90 56.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 2.6e-23 112.8 90 60.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.4e-23 112.5 95 52.6
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 4.4e-23 112.1 104 50.0
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 4.4e-23 112.1 128 44.5
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 4.4e-23 112.1 90 60.0
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.4e-23 112.1 93 54.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 4.4e-23 112.1 106 51.9
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 5.8e-23 111.7 112 51.8
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 5.8e-23 111.7 90 56.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 7.5e-23 111.3 90 54.4
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.3e-22 110.5 93 52.7
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 1.3e-22 110.5 98 56.1
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.7e-22 110.2 91 54.9
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.9e-22 109.4 105 53.3
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 3.7e-22 109.0 97 51.5
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.7e-22 109.0 88 58.0
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 6.4e-22 108.2 90 54.4
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 8.3e-22 107.8 91 56.0
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.1e-21 107.5 90 58.9
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.1e-21 107.5 91 54.9
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.1e-21 107.5 87 57.5
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 1.1e-21 107.5 90 56.7
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.4e-21 107.1 90 57.8
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 1.4e-21 107.1 90 56.7
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.9e-21 106.7 90 56.7
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.9e-21 106.7 90 56.7
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.9e-21 106.7 90 54.4
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 2.4e-21 106.3 88 58.0
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.4e-21 106.3 105 51.4
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.4e-21 106.3 107 50.5
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.4e-21 106.3 88 54.5
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 3.2e-21 105.9 105 51.4
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.2e-21 105.9 105 51.4
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.2e-21 105.9 101 52.5
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 4.1e-21 105.5 90 53.3
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 4.1e-21 105.5 116 43.1
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 4.1e-21 105.5 90 50.0
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 4.1e-21 105.5 112 45.5
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.1e-21 105.5 91 52.7
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 5.4e-21 105.1 106 49.1
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.4e-21 105.1 102 48.0
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 5.4e-21 105.1 92 55.4
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 7.1e-21 104.8 105 52.4
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 9.2e-21 104.4 128 43.0
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.2e-20 104.0 105 50.5
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.6e-20 103.6 95 52.6
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 2.1e-20 103.2 88 55.7
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.7e-20 102.8 90 52.2
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.7e-20 102.8 90 52.2
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 3.5e-20 102.4 88 53.4
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 4.6e-20 102.1 96 51.0
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.0e-19 100.9 90 55.6
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.0e-19 100.9 103 49.5
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.0e-19 100.9 96 50.0
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-19 100.5 103 51.5
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.7e-19 100.1 88 52.3
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 3.9e-19 99.0 103 50.5
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.9e-19 99.0 88 52.3
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 5.1e-19 98.6 101 49.5
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.1e-18 97.4 88 51.1
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.9e-18 96.7 89 50.6
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.9e-18 96.7 105 45.7
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.5e-18 96.3 88 52.3
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 2.5e-18 96.3 100 45.0
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 5.6e-18 95.1 122 42.6
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 7.3e-18 94.7 88 52.3
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 7.3e-18 94.7 89 44.9
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 4.7e-17 92.0 86 45.3
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 4.7e-17 92.0 86 52.3
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 4.7e-17 92.0 87 46.0
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 8.9e-16 87.8 101 45.5
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.2e-15 87.4 93 45.2
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.5e-15 87.0 103 43.7
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.3e-14 84.0 88 43.2
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.5e-10 70.5 49 69.4
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 4.4e-07 58.9 48 56.2
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 3.8e-06 55.8 125 27.2


User provided reference genes

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