Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 6.3e-48 193.7 96 100.0
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 4.0e-34 147.9 77 94.8
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 6.8e-34 147.1 91 80.2
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 7.5e-33 143.7 86 82.6
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 7.0e-31 137.1 77 89.6
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 7.0e-31 137.1 77 89.6
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 3.0e-29 131.7 77 85.7
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.1e-28 129.8 77 84.4
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 2.5e-28 128.6 77 84.4
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 7.3e-28 127.1 77 83.1
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 2.1e-27 125.6 77 81.8
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 8.0e-27 123.6 77 80.5
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 1.8e-26 122.5 77 80.5
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 3.1e-26 121.7 77 79.2
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 4.6e-22 107.8 81 72.8
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.7e-21 105.9 77 68.8
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.1e-20 103.2 77 66.2
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.1e-20 103.2 77 66.2
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.1e-20 103.2 77 66.2
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 2.5e-20 102.1 77 66.2
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 7.3e-20 100.5 77 66.2
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 2.1e-19 99.0 77 64.9
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 4.4e-17 91.3 77 61.0
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 8.3e-16 87.0 77 55.8
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.4e-15 86.3 91 50.5
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 2.4e-15 85.5 68 64.7
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 2.4e-15 85.5 78 56.4
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 3.2e-15 85.1 79 55.7
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 3.2e-15 85.1 79 55.7
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 3.2e-15 85.1 78 56.4
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 4.1e-15 84.7 78 56.4
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 4.1e-15 84.7 78 56.4
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 5.4e-15 84.3 80 56.2
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 7.1e-15 84.0 78 55.1
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 1.2e-14 83.2 78 55.1
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.2e-14 83.2 79 54.4
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 1.2e-14 83.2 79 55.7
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-14 83.2 79 55.7
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-14 83.2 79 55.7
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-14 83.2 79 55.7
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.6e-14 82.8 78 55.1
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.6e-14 82.8 78 56.4
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 2.1e-14 82.4 78 55.1
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.7e-14 82.0 80 53.8
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.5e-14 81.6 79 54.4
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 3.5e-14 81.6 79 54.4
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.6e-14 81.3 79 54.4
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 6.0e-14 80.9 78 52.6
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 6.0e-14 80.9 79 53.2
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 7.8e-14 80.5 79 53.2
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.3e-13 79.7 79 54.4
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 1.7e-13 79.3 69 68.1
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.7e-13 79.3 78 51.3
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 3.0e-13 78.6 78 52.6
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 3.0e-13 78.6 83 55.4
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 3.9e-13 78.2 78 52.6
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 5.1e-13 77.8 79 51.9
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 5.1e-13 77.8 78 51.3
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 6.6e-13 77.4 78 53.8
BraA05t22495Z Brassica rapa HOM05D005838 ORTHO05D007177 1.1e-12 76.6 41 90.2
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 2.5e-12 75.5 74 51.4
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 3.3e-12 75.1 81 50.6
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 3.3e-12 75.1 78 50.0
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 5.6e-12 74.3 78 50.0
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 7.3e-12 73.9 78 48.7
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 9.6e-12 73.6 78 48.7
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 9.6e-12 73.6 78 48.7
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 9.6e-12 73.6 79 49.4
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 9.6e-12 73.6 80 46.2
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 9.6e-12 73.6 78 48.7
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.2e-11 73.2 79 48.1
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.6e-11 72.8 57 64.9
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.6e-11 72.8 78 48.7
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 2.8e-11 72.0 69 56.5
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 3.6e-11 71.6 78 47.4
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 4.7e-11 71.2 78 48.7
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 6.2e-11 70.9 79 46.8
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 8.1e-11 70.5 57 59.6
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 1.4e-10 69.7 78 46.2
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 2.4e-10 68.9 78 48.7
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 2.4e-10 68.9 79 46.8
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 3.1e-10 68.6 68 52.9
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 3.1e-10 68.6 78 46.2
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 4.0e-10 68.2 78 48.7
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 4.0e-10 68.2 78 46.2
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 6.8e-10 67.4 77 45.5
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 8.9e-10 67.0 79 45.6
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 8.9e-10 67.0 77 45.5
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.2e-09 66.6 78 46.2
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.2e-09 66.6 78 47.4
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 1.2e-09 66.6 81 48.1
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.5e-09 66.2 75 50.7
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 1.5e-09 66.2 79 44.3
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.3e-08 63.2 79 43.0
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 1.3e-08 63.2 68 45.6
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 1.7e-08 62.8 53 58.5
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 3.8e-08 61.6 65 58.5
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 8.4e-08 60.5 76 46.1
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 3.2e-07 58.5 78 41.0
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 7.1e-07 57.4 77 37.7
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 7.1e-07 57.4 79 41.8
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.2e-06 56.6 81 43.2
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 1.2e-06 56.6 77 40.3
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 1.2e-06 56.6 77 37.7
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.2e-06 56.6 79 40.5
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.2e-06 56.6 79 41.8
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 1.2e-06 56.6 79 40.5
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 1.2e-06 56.6 79 40.5
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 1.2e-06 56.6 79 40.5
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 2.1e-06 55.8 78 38.5
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 2.1e-06 55.8 79 39.2
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 4.6e-06 54.7 80 41.2
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 7.8e-06 53.9 78 39.7


User provided reference genes

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