Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p54300 Brassica napus HOM05D065195 ORTHO05D042097 4.7e-106 387.9 198 100.0
BolC5t34098H Brassica oleracea HOM05D065195 ORTHO05D042097 4.7e-106 387.9 198 100.0
A06p28490 Brassica napus HOM05D000402 ORTHO05D000263 7.7e-16 88.2 126 49.2
BraA06t25792Z Brassica rapa HOM05D000402 ORTHO05D000263 7.7e-16 88.2 126 49.2
BcaC01g02439 Brassica carinata HOM05D000402 ORTHO05D000263 7.2e-14 81.6 98 55.1
C03p65280 Brassica napus HOM05D000402 ORTHO05D000263 7.2e-14 81.6 98 55.1
BolC3t18781H Brassica oleracea HOM05D000402 ORTHO05D000263 7.2e-14 81.6 98 55.1
Thhalv10004629m.g Eutrema salsugineum HOM05D000402 ORTHO05D000263 1.2e-13 80.9 98 53.1
Sp2g25030 Schrenkiella parvula HOM05D000402 ORTHO05D000263 1.6e-13 80.5 98 54.1
CARHR275590 Cardamine hirsuta HOM05D000402 ORTHO05D000263 2.7e-13 79.7 99 53.5
AT5G61830 Arabidopsis thaliana HOM05D000402 ORTHO05D000263 3.0e-12 76.3 99 53.5
Aa31LG11G1660 Aethionema arabicum HOM05D000402 ORTHO05D000263 1.7e-10 70.5 126 41.3
Carub.0008s2253 Capsella rubella HOM05D000402 ORTHO05D000263 1.7e-10 70.5 127 42.5
THA.LOC104801760 Tarenaya hassleriana HOM05D000402 ORTHO05D000263 2.8e-10 69.7 97 45.4
Sc22g0003250 Simmondsia chinensis HOM05D000402 ORTHO05D000263 4.9e-10 68.9 96 44.8
HanXRQChr02g0034371 Helianthus annuus HOM05D000402 ORTHO05D000263 1.8e-09 67.0 96 42.7
HanXRQChr16g0498971 Helianthus annuus HOM05D000402 ORTHO05D000263 1.8e-09 67.0 99 45.5
Sed0013984 Sechium edule HOM05D000402 ORTHO05D000263 3.1e-09 66.2 93 46.2
arahy.Tifrunner.gnm1.ann1.6UI7FH Arachis hypogaea HOM05D000402 ORTHO05D000263 4.1e-09 65.9 93 43.0
arahy.Tifrunner.gnm1.ann1.S9I76Q Arachis hypogaea HOM05D000402 ORTHO05D000263 4.1e-09 65.9 93 43.0
ECA232G3814 Erigeron canadensis HOM05D000402 ORTHO05D000263 4.1e-09 65.9 106 42.5
Potri.012G110200 Populus trichocarpa HOM05D000402 ORTHO05D000263 7.0e-09 65.1 96 44.8
ClCG06G018420 Citrullus lanatus HOM05D000402 ORTHO05D000263 9.2e-09 64.7 96 45.8
MELO3C026155.2 Cucumis melo HOM05D000402 ORTHO05D000263 9.2e-09 64.7 96 45.8
CsaV3_1G000030 Cucumis sativus L. HOM05D000402 ORTHO05D000263 9.2e-09 64.7 96 45.8
Potri.015G108400 Populus trichocarpa HOM05D000402 ORTHO05D000263 9.2e-09 64.7 96 44.8
Ciclev10032162m.g Citrus clementina HOM05D000402 ORTHO05D000263 1.2e-08 64.3 92 45.7
Lj2g0025026 Lotus japonicus HOM05D000402 ORTHO05D000263 1.6e-08 63.9 50 66.0
Manes.06G127600 Manihot esculenta HOM05D000402 ORTHO05D000263 1.6e-08 63.9 50 62.0
QL10p000274 Quercus lobata HOM05D000402 ORTHO05D000263 2.0e-08 63.5 50 64.0
Haze_07086 Corylus avellana HOM05D000402 ORTHO05D000263 2.7e-08 63.2 96 44.8
Atru.chr6.1939 Acer truncatum HOM05D000402 ORTHO05D000263 3.5e-08 62.8 52 63.5
Dinv13707 Davidia involucrata HOM05D000402 ORTHO05D000263 3.5e-08 62.8 97 42.3
Lsat_1_v5_gn_1_30120 Lactuca sativa HOM05D000402 ORTHO05D000263 3.5e-08 62.8 101 41.6
Nitab4.5_0004985g0010 Nicotiana tabacum HOM05D000402 ORTHO05D000263 3.5e-08 62.8 99 44.4
Aa31LG3G7510 Aethionema arabicum HOM05D000402 ORTHO05D000263 4.5e-08 62.4 94 42.6
COL.COLO4_37272 Corchorus olitorius HOM05D000402 ORTHO05D000263 4.5e-08 62.4 94 43.6
Dinv23237 Davidia involucrata HOM05D000402 ORTHO05D000263 4.5e-08 62.4 96 41.7
Lsat_1_v5_gn_4_84280 Lactuca sativa HOM05D000402 ORTHO05D000263 4.5e-08 62.4 100 43.0
Phvul.003G033300 Phaseolus vulgaris HOM05D000402 ORTHO05D000263 4.5e-08 62.4 97 45.4
Thecc.03G142100 Theobroma cacao HOM05D000402 ORTHO05D000263 4.5e-08 62.4 93 46.2
Gohir.A03G055700 Gossypium hirsutum HOM05D000402 ORTHO05D000263 5.9e-08 62.0 93 45.2
Gohir.D03G110900 Gossypium hirsutum HOM05D000402 ORTHO05D000263 5.9e-08 62.0 93 45.2
Gorai.003G117400 Gossypium raimondii HOM05D000402 ORTHO05D000263 5.9e-08 62.0 93 45.2
SalBow1G8231 Salvia bowleyana HOM05D000402 ORTHO05D000263 5.9e-08 62.0 74 51.4
Solyc06g068740.4 Solanum lycopersicum HOM05D000402 ORTHO05D000263 5.9e-08 62.0 96 40.6
Nitab4.5_0007345g0090 Nicotiana tabacum HOM05D000402 ORTHO05D000263 7.7e-08 61.6 96 40.6
Hund10023 Selenicereus undatus HOM05D000402 ORTHO05D000263 7.7e-08 61.6 71 52.1
Cpa.g.sc13.185 Carica papaya HOM05D000402 ORTHO05D000263 1.0e-07 61.2 96 42.7
Duzib084G1390 Durio zibethinus HOM05D000402 ORTHO05D000263 1.0e-07 61.2 93 45.2
AL8G25250 Arabidopsis lyrata HOM05D000402 ORTHO05D000263 1.3e-07 60.8 94 41.5
AT5G51030 Arabidopsis thaliana HOM05D000402 ORTHO05D000263 1.3e-07 60.8 94 41.5
Lj4g0027244 Lotus japonicus HOM05D000402 ORTHO05D000263 1.3e-07 60.8 92 42.4
Medtr1g031180 Medicago truncatula HOM05D000402 ORTHO05D000263 1.3e-07 60.8 47 66.0
Sp5g35120 Schrenkiella parvula HOM05D000134 ORTHO05D002396 1.3e-07 60.8 36 80.6
Sopen06g026020 Solanum pennellii HOM05D000402 ORTHO05D000263 1.3e-07 60.8 96 39.6
vmacro16763 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.3e-07 60.8 93 44.1
Lj9A488G66 Lonicera japonica HOM05D000402 ORTHO05D000263 1.7e-07 60.5 50 60.0
Nitab4.5_0000976g0120 Nicotiana tabacum HOM05D000402 ORTHO05D000263 1.7e-07 60.5 99 43.4
CAN.G1008.48 Capsicum annuum HOM05D000402 ORTHO05D000263 2.3e-07 60.1 96 42.7
Migut.I00661 Erythranthe guttata HOM05D000402 ORTHO05D000263 2.3e-07 60.1 96 42.7
Glyma.05G199500 Glycine max HOM05D000402 ORTHO05D000263 2.3e-07 60.1 93 40.9
Glyma.08G007000 Glycine max HOM05D000402 ORTHO05D000263 2.3e-07 60.1 93 40.9
Peaxi162Scf00207g00241 Petunia axillaris HOM05D000402 ORTHO05D000263 2.3e-07 60.1 50 60.0
VMungo0251G1397 Vigna mungo HOM05D000402 ORTHO05D000263 2.3e-07 60.1 107 38.3
Carub.0008s1103 Capsella rubella HOM05D000402 ORTHO05D000263 2.9e-07 59.7 94 40.4
Lalb_Chr11g0069061 Lupinus albus HOM05D000402 ORTHO05D000263 2.9e-07 59.7 93 40.9
MD14G1145700 Malus domestica HOM05D000402 ORTHO05D000263 2.9e-07 59.7 50 60.0
Psat7g039880 Pisum sativum HOM05D000402 ORTHO05D000263 2.9e-07 59.7 92 41.3
MSTRG.9377 Avicennia marina HOM05D000402 ORTHO05D000263 3.8e-07 59.3 98 40.8
Lalb_Chr07g0194011 Lupinus albus HOM05D000402 ORTHO05D000263 3.8e-07 59.3 50 62.0
Oeu051183.1 Olea europaea HOM05D000402 ORTHO05D000263 3.8e-07 59.3 50 62.0
Peaxi162Scf00314g00729 Petunia axillaris HOM05D000402 ORTHO05D000263 3.8e-07 59.3 95 45.3
Prupe.5G140000 Prunus persica HOM05D000402 ORTHO05D000263 3.8e-07 59.3 46 65.2
SalBow7G1358 Salvia bowleyana HOM05D000402 ORTHO05D000263 3.8e-07 59.3 96 41.7
PGSC0003DMG400014237 Solanum tuberosum HOM05D000402 ORTHO05D000263 3.8e-07 59.3 96 38.5
Hma1.2p1_0577F.1_g182170 Hydrangea macrophylla HOM05D000402 ORTHO05D000263 5.0e-07 58.9 96 43.8
SGA_v2.0_scaffold37G14669 Striga asiatica HOM05D000402 ORTHO05D000263 5.0e-07 58.9 96 41.7
TAR622G0146 Trochodendron aralioides HOM05D000402 ORTHO05D000263 5.0e-07 58.9 96 38.5
MSTRG.22816 Avicennia marina HOM05D000402 ORTHO05D000263 6.6e-07 58.5 96 43.8
Cc04_g05740 Coffea canephora HOM05D000402 ORTHO05D000263 6.6e-07 58.5 96 42.7
Duzib205G0881 Durio zibethinus HOM05D000402 ORTHO05D000263 6.6e-07 58.5 93 44.1
PGR044G1893 Punica granatum HOM05D000402 ORTHO05D000263 6.6e-07 58.5 50 62.0
EL10Ac7g16732 Beta vulgaris HOM05D000402 ORTHO05D000263 8.6e-07 58.2 93 43.0
C06p53890 Brassica napus HOM05D000134 ORTHO05D002396 8.6e-07 58.2 36 75.0
CAN.G1089.14 Capsicum annuum HOM05D000402 ORTHO05D000263 8.6e-07 58.2 96 38.5
AUR62040176 Chenopodium quinoa HOM05D000402 ORTHO05D000263 8.6e-07 58.2 93 43.0
Glyma.06G162800 Glycine max HOM05D000402 ORTHO05D000263 8.6e-07 58.2 54 53.7
Gohir.D11G042200 Gossypium hirsutum HOM05D000402 ORTHO05D000263 8.6e-07 58.2 47 63.8
Gorai.007G045400 Gossypium raimondii HOM05D000402 ORTHO05D000263 8.6e-07 58.2 47 63.8
Lalb_Chr13g0296931 Lupinus albus HOM05D000402 ORTHO05D000263 8.6e-07 58.2 100 36.0
MD00G1129700 Malus domestica HOM05D000402 ORTHO05D000263 8.6e-07 58.2 46 65.2
Nitab4.5_0002540g0020 Nicotiana tabacum HOM05D000402 ORTHO05D000263 8.6e-07 58.2 93 39.8
Hund02517 Selenicereus undatus HOM05D000402 ORTHO05D000263 8.6e-07 58.2 88 44.3
THA.LOC104825040 Tarenaya hassleriana HOM05D000402 ORTHO05D000263 8.6e-07 58.2 94 40.4
TWI39G0700 Tripterygium wilfordii HOM05D000402 ORTHO05D000263 8.6e-07 58.2 100 39.0
Ca_26467_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.1e-06 57.8 50 62.0
Glyma.04G202700 Glycine max HOM05D000402 ORTHO05D000263 1.1e-06 57.8 50 58.0
Phvul.002G280700 Phaseolus vulgaris HOM05D000402 ORTHO05D000263 1.1e-06 57.8 93 38.7
DCAR_016331 Daucus carota HOM05D000402 ORTHO05D000263 1.5e-06 57.4 100 38.0
Nitab4.5_0012775g0020 Nicotiana tabacum HOM05D000402 ORTHO05D000263 1.5e-06 57.4 96 38.5
Sp6g13200 Schrenkiella parvula HOM05D000402 ORTHO05D000263 1.5e-06 57.4 94 40.4
Sopen03g037000 Solanum pennellii HOM05D000402 ORTHO05D000263 1.9e-06 57.0 96 37.5
Hma1.2p1_0452F.1_g155890 Hydrangea macrophylla HOM05D000402 ORTHO05D000263 2.5e-06 56.6 107 41.1
Sabra12G0080200 Salix brachista HOM05D000402 ORTHO05D000263 2.5e-06 56.6 120 38.3
unitig_747.g21317 Utricularia gibba HOM05D001551 ORTHO05D000263 2.5e-06 56.6 97 40.2
GSVIVG01005683001 Vitis vinifera HOM05D000402 ORTHO05D000263 2.5e-06 56.6 50 56.0
AL8G38590 Arabidopsis lyrata HOM05D000402 ORTHO05D000263 3.3e-06 56.2 84 47.6
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.3e-06 56.2 106 35.8
Medtr8g096060 Medicago truncatula HOM05D000402 ORTHO05D000263 3.3e-06 56.2 50 56.0
Solyc12g042370.3 Solanum lycopersicum HOM05D000402 ORTHO05D000263 3.3e-06 56.2 93 37.6
A07p45060 Brassica napus HOM05D000134 ORTHO05D002396 4.3e-06 55.8 36 72.2
CANSAT56G4062 Cannabis sativa HOM05D000402 ORTHO05D000263 4.3e-06 55.8 92 42.4
HanXRQChr10g0316011 Helianthus annuus HOM05D000402 ORTHO05D000263 4.3e-06 55.8 99 40.4
Psat6g043480 Pisum sativum HOM05D000402 ORTHO05D000263 4.3e-06 55.8 46 63.0
Psat5g056080 Pisum sativum HOM05D000402 ORTHO05D000263 5.6e-06 55.5 96 38.5
Migut.D01173 Erythranthe guttata HOM05D000402 ORTHO05D000263 7.3e-06 55.1 50 56.0
BcaC01g06111 Brassica carinata HOM05D000402 ORTHO05D000263 9.5e-06 54.7 88 39.8
BraA07t32009Z Brassica rapa HOM05D000085 ORTHO05D002396 9.5e-06 54.7 140 33.6
Gohir.A11G038900 Gossypium hirsutum HOM05D000402 ORTHO05D000263 9.5e-06 54.7 47 61.7
SGA_v2.0_scaffold168G38553 Striga asiatica HOM05D000402 ORTHO05D000263 9.5e-06 54.7 84 41.7
TPR.G16924 Trifolium pratense HOM05D000402 ORTHO05D000263 9.5e-06 54.7 96 43.8


User provided reference genes

Program Settings