Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.1e-137 493.4 264 100.0
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 6.9e-137 490.7 264 99.6
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 8.2e-130 467.2 249 99.2
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 9.3e-126 453.8 249 94.8
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 6.1e-125 451.1 259 91.9
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.8e-122 442.2 249 93.2
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 8.2e-114 414.1 250 86.4
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.4e-113 412.5 249 87.1
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 5.0e-111 404.8 263 83.7
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.5e-111 404.1 249 87.1
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.8e-108 396.4 249 84.3
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 9.7e-99 364.0 253 77.9
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 9.8e-91 337.4 236 75.4
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.8e-89 333.2 232 74.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.0e-88 329.7 230 75.7
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.2e-87 326.2 236 72.0
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 9.4e-86 320.9 218 76.1
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.1e-85 318.2 236 72.0
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.8e-84 316.6 235 72.8
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 3.0e-84 315.8 236 70.8
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 3.0e-84 315.8 236 70.8
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.4e-81 307.0 228 71.9
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.7e-80 302.8 236 69.9
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 3.5e-80 302.4 228 71.1
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 3.5e-80 302.4 228 71.1
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 6.6e-79 298.1 232 70.3
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.6e-77 293.5 249 68.7
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.1e-73 280.8 222 65.8
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 5.9e-72 275.0 223 65.5
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.0e-71 272.7 230 62.6
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 5.0e-71 271.9 217 64.5
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 6.6e-71 271.6 217 63.6
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.1e-70 270.8 217 63.6
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 3.3e-70 269.2 233 61.8
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 4.3e-70 268.9 219 63.0
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 7.3e-70 268.1 217 63.1
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 9.5e-70 267.7 219 62.1
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.2e-69 267.3 232 63.4
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.6e-69 266.9 223 62.8
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 3.6e-69 265.8 239 61.9
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 4.7e-69 265.4 226 61.5
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.8e-68 263.5 227 61.2
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.8e-68 263.5 236 61.4
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 2.3e-68 263.1 219 64.4
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 5.2e-68 261.9 227 60.8
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.2e-67 260.8 226 62.8
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.5e-67 260.4 230 61.7
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 3.4e-67 259.2 255 58.8
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 4.4e-67 258.8 227 61.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 5.8e-67 258.5 230 61.3
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.2e-66 256.5 216 63.9
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.2e-66 256.5 223 60.5
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 2.2e-66 256.5 234 59.4
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 3.7e-66 255.8 231 61.0
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 4.9e-66 255.4 225 60.4
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.1e-65 254.2 234 61.1
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 2.4e-65 253.1 231 60.6
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 4.1e-65 252.3 222 59.5
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 5.4e-65 251.9 225 60.4
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 5.4e-65 251.9 232 60.3
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 5.4e-65 251.9 224 60.3
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 7.0e-65 251.5 259 56.4
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 2.0e-64 250.0 232 59.9
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.7e-64 249.6 240 56.7
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 6.0e-64 248.4 225 60.4
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 6.0e-64 248.4 247 55.9
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.0e-63 247.7 219 59.4
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.7e-63 246.9 227 59.5
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.7e-63 246.9 236 58.5
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.7e-63 246.9 227 59.5
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.3e-63 246.5 214 60.7
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.0e-63 246.1 225 56.0
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 5.0e-63 245.4 243 57.2
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 8.6e-63 244.6 236 58.1
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 8.6e-63 244.6 221 60.2
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.6e-61 240.4 224 59.4
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.1e-61 240.0 216 60.2
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 3.6e-61 239.2 214 61.7
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 3.6e-61 239.2 227 57.7
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.1e-60 237.7 142 87.3
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.1e-60 237.7 227 58.1
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.0e-60 235.7 220 60.5
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 4.0e-60 235.7 146 75.3
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.2e-59 234.2 195 62.6
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.0e-59 233.4 251 52.6
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 2.6e-59 233.0 235 56.6
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 4.4e-59 232.3 251 51.4
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 9.8e-59 231.1 266 51.9
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.2e-58 229.9 221 57.0
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 2.9e-58 229.6 173 62.4
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 4.9e-58 228.8 205 61.5
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 4.9e-58 228.8 150 72.7
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 6.4e-58 228.4 232 55.6
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 5.4e-57 225.3 225 53.3
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 9.2e-57 224.6 281 48.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.6e-56 223.8 222 55.9
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 2.7e-56 223.0 209 55.0
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 3.5e-56 222.6 257 47.9
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 3.0e-55 219.5 221 52.5
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 7.3e-54 214.9 212 58.5
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 2.8e-53 213.0 233 52.8
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.0e-52 209.1 184 57.1
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 8.9e-52 208.0 165 61.8
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.1e-49 201.1 147 66.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 2.4e-49 199.9 230 48.7
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 1.3e-47 194.1 133 66.2
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.5e-46 189.9 144 62.5
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 5.2e-44 182.2 227 48.5
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 2.9e-42 176.4 139 60.4
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 8.4e-42 174.9 137 62.0
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.4e-41 174.1 142 57.7
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 2.1e-40 170.2 173 55.5
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 3.9e-39 166.0 178 50.6
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.1e-38 164.5 229 46.7
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.6e-37 160.6 134 55.2
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.1e-37 160.2 161 55.9
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 2.8e-37 159.8 113 65.5
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 5.3e-36 155.6 133 55.6
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 8.1e-29 131.7 93 72.0
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.3e-28 129.0 183 45.4
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 9.0e-28 128.3 76 73.7
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 5.8e-27 125.6 92 67.4
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 6.4e-26 122.1 120 55.8
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 7.4e-22 108.6 139 41.7
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 7.6e-19 98.6 61 70.5
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 7.9e-16 88.6 71 60.6
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.3e-14 82.8 103 45.6
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.4e-14 82.0 54 70.4
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.8e-13 80.1 120 41.7
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 4.6e-08 62.8 128 28.9
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 6.1e-08 62.4 219 29.7
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 5.1e-07 59.3 36 75.0


User provided reference genes

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