Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29047 Brassica carinata HOM05D017269 ORTHO05D017194 1.8e-44 182.2 90 100.0
C05p52600 Brassica napus HOM05D017269 ORTHO05D017194 1.8e-44 182.2 90 100.0
BolC5t33939H Brassica oleracea HOM05D017269 ORTHO05D017194 4.9e-42 174.1 90 95.6
AL3G27620 Arabidopsis lyrata HOM05D000458 ORTHO05D004796 2.0e-19 99.0 56 85.7
BcaB06g29546 Brassica carinata HOM05D000458 ORTHO05D004796 2.0e-19 99.0 56 85.7
Thhalv10022019m.g Eutrema salsugineum HOM05D000458 ORTHO05D004796 2.0e-19 99.0 56 85.7
Sp3g13430 Schrenkiella parvula HOM05D000458 ORTHO05D004796 2.0e-19 99.0 56 85.7
Glyma.12G226300 Glycine max HOM05D000458 ORTHO05D004796 2.6e-19 98.6 63 74.6
Glyma.13G274500 Glycine max HOM05D000458 ORTHO05D004796 2.6e-19 98.6 63 74.6
VMungo1080G1214 Vigna mungo HOM05D000458 ORTHO05D004796 2.6e-19 98.6 63 74.6
Aqoxy1G02338 Aquilegia oxysepala HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
arahy.Tifrunner.gnm1.ann1.IF9FMX Arachis hypogaea HOM05D000458 ORTHO05D004796 4.4e-19 97.8 63 74.6
arahy.Tifrunner.gnm1.ann1.Q9DAYR Arachis hypogaea HOM05D000458 ORTHO05D004796 4.4e-19 97.8 63 74.6
A05p34250 Brassica napus HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
C05p52010 Brassica napus HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
BolC5t33886H Brassica oleracea HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
BraA05t22245Z Brassica rapa HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
COL.COLO4_36710 Corchorus olitorius HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
Dinv14934 Davidia involucrata HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
Lj8C154G21 Lonicera japonica HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
Lalb_Chr20g0109541 Lupinus albus HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
Lalb_Chr25g0286251 Lupinus albus HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
Thecc.07G095400 Theobroma cacao HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
TWI38G0342 Tripterygium wilfordii HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
GSVIVG01014297001 Vitis vinifera HOM05D000458 ORTHO05D004796 4.4e-19 97.8 56 83.9
CARHR090210 Cardamine hirsuta HOM05D000458 ORTHO05D004796 5.8e-19 97.4 56 83.9
Prupe.4G176700 Prunus persica HOM05D000458 ORTHO05D004796 5.8e-19 97.4 56 83.9
RcHm_v2.0_Chr5g0032781 Rosa chinensis HOM05D000458 ORTHO05D004796 5.8e-19 97.4 56 83.9
DCAR_020994 Daucus carota HOM05D000458 ORTHO05D004796 7.6e-19 97.1 56 82.1
Lj1A840T52 Lonicera japonica HOM05D000458 ORTHO05D004796 7.6e-19 97.1 50 90.0
Atru.chr2.2425 Acer truncatum HOM05D000458 ORTHO05D004796 9.9e-19 96.7 56 82.1
CSS0014493 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 9.9e-19 96.7 56 82.1
CSS0025002 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 9.9e-19 96.7 56 82.1
Duzib213G0712 Durio zibethinus HOM05D000458 ORTHO05D004796 9.9e-19 96.7 71 67.6
Gohir.A01G061500 Gossypium hirsutum HOM05D000458 ORTHO05D004796 9.9e-19 96.7 56 82.1
Gohir.D01G048100 Gossypium hirsutum HOM05D000458 ORTHO05D004796 9.9e-19 96.7 56 82.1
Gorai.002G067900 Gossypium raimondii HOM05D000458 ORTHO05D004796 9.9e-19 96.7 56 82.1
Lalb_Chr01g0016761 Lupinus albus HOM05D000458 ORTHO05D004796 9.9e-19 96.7 50 90.0
MBI02_g22346_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D004796 9.9e-19 96.7 56 82.1
Nn1g06451 Nelumbo nucifera HOM05D000458 ORTHO05D004796 9.9e-19 96.7 56 82.1
Phvul.005G074300 Phaseolus vulgaris HOM05D000458 ORTHO05D004796 9.9e-19 96.7 63 73.0
Psat5g241840 Pisum sativum HOM05D000458 ORTHO05D004796 9.9e-19 96.7 97 55.7
Actinidia09699 Actinidia chinensis HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
CANSAT56G2918 Cannabis sativa HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
Ca_03525_v3 Cicer arietinum L. HOM05D000458 ORTHO05D004796 1.3e-18 96.3 63 73.0
ECA234G3073 Erigeron canadensis HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
Gohir.A04G035100 Gossypium hirsutum HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
Gohir.D05G348300 Gossypium hirsutum HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
Gorai.009G376100 Gossypium raimondii HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
MD11G1252300 Malus domestica HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
Manes.15G089100 Manihot esculenta HOM05D000458 ORTHO05D004796 1.3e-18 96.3 89 60.7
Nn1g04174 Nelumbo nucifera HOM05D000458 ORTHO05D004796 1.3e-18 96.3 89 60.7
PSO541G3462 Papaver somniferum HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
PSO675G8241 Papaver somniferum HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
Peaxi162Scf00069g01722 Petunia axillaris HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
Hund22872 Selenicereus undatus HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
SGA_v2.0_scaffold73G24238 Striga asiatica HOM05D000458 ORTHO05D004796 1.3e-18 96.3 56 82.1
Aa31LG8G2420 Aethionema arabicum HOM05D000458 ORTHO05D004796 1.7e-18 95.9 50 92.0
Carub.0003s1488 Capsella rubella HOM05D000458 ORTHO05D004796 1.7e-18 95.9 56 83.9
ECA236G3680 Erigeron canadensis HOM05D000458 ORTHO05D004796 1.7e-18 95.9 56 82.1
HanXRQChr15g0495451 Helianthus annuus HOM05D000458 ORTHO05D004796 1.7e-18 95.9 56 82.1
Potri.001G397600 Populus trichocarpa HOM05D000458 ORTHO05D004796 1.7e-18 95.9 56 82.1
Sabra16G0260600 Salix brachista HOM05D000458 ORTHO05D004796 1.7e-18 95.9 50 88.0
SGA_v2.0_scaffold34G13801 Striga asiatica HOM05D000458 ORTHO05D004796 1.7e-18 95.9 56 82.1
CSS0021889 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 2.2e-18 95.5 56 80.4
CiPaw.11G171700 Carya illinoinensis HOM05D000458 ORTHO05D004796 2.2e-18 95.5 56 80.4
CiPaw.12G120000 Carya illinoinensis HOM05D000458 ORTHO05D004796 2.2e-18 95.5 56 80.4
AUR62036173 Chenopodium quinoa HOM05D000458 ORTHO05D004796 2.2e-18 95.5 89 60.7
Eucgr.F01158 Eucalyptus grandis HOM05D000458 ORTHO05D004796 2.2e-18 95.5 56 82.1
Lsat_1_v5_gn_5_128461 Lactuca sativa HOM05D000458 ORTHO05D004796 2.2e-18 95.5 56 82.1
MD03G1231300 Malus domestica HOM05D000458 ORTHO05D004796 2.2e-18 95.5 56 80.4
Sed0017869 Sechium edule HOM05D000458 ORTHO05D004796 2.2e-18 95.5 50 88.0
vmacro11884 Vaccinium macrocarpon HOM05D000458 ORTHO05D004796 2.2e-18 95.5 56 80.4
AUR62019457 Chenopodium quinoa HOM05D000458 ORTHO05D004796 2.9e-18 95.1 89 60.7
ClCG11G017900 Citrullus lanatus HOM05D000458 ORTHO05D004796 2.9e-18 95.1 56 80.4
MELO3C025602.2 Cucumis melo HOM05D000458 ORTHO05D004796 2.9e-18 95.1 56 80.4
CsaV3_4G033530 Cucumis sativus L. HOM05D000458 ORTHO05D004796 2.9e-18 95.1 56 80.4
Medtr2g078740 Medicago truncatula HOM05D000458 ORTHO05D004796 2.9e-18 95.1 97 54.6
Oeu037369.1 Olea europaea HOM05D000458 ORTHO05D004796 2.9e-18 95.1 56 82.1
SalBow7G2789 Salvia bowleyana HOM05D000458 ORTHO05D004796 2.9e-18 95.1 56 82.1
Sed0018585 Sechium edule HOM05D000458 ORTHO05D004796 2.9e-18 95.1 56 80.4
Aa31LG10G1970 Aethionema arabicum HOM05D000458 ORTHO05D004796 3.8e-18 94.7 56 80.4
Gohir.A13G146700 Gossypium hirsutum HOM05D000458 ORTHO05D004796 3.8e-18 94.7 71 66.2
TPR.G7967 Trifolium pratense HOM05D000458 ORTHO05D004796 3.8e-18 94.7 97 54.6
BcaB02g10934 Brassica carinata HOM05D000458 ORTHO05D004796 4.9e-18 94.4 56 80.4
Dinv20197 Davidia involucrata HOM05D000458 ORTHO05D004796 4.9e-18 94.4 56 80.4
Duzib170G0212 Durio zibethinus HOM05D000458 ORTHO05D004796 4.9e-18 94.4 56 82.1
Migut.H01953 Erythranthe guttata HOM05D000458 ORTHO05D004796 4.9e-18 94.4 50 88.0
FvH4_3g19600 Fragaria vesca HOM05D000458 ORTHO05D004796 4.9e-18 94.4 56 82.1
FAN11G2605 Fragaria x ananassa HOM05D000458 ORTHO05D004796 4.9e-18 94.4 56 82.1
FAN16G2185 Fragaria x ananassa HOM05D000458 ORTHO05D004796 4.9e-18 94.4 56 82.1
FAN21G0672 Fragaria x ananassa HOM05D000458 ORTHO05D004796 4.9e-18 94.4 51 86.3
FAN25G3598 Fragaria x ananassa HOM05D000458 ORTHO05D004796 4.9e-18 94.4 56 82.1
Ciclev10007625m.g Citrus clementina HOM05D000458 ORTHO05D004796 6.4e-18 94.0 56 82.1
Glyma.06G238000 Glycine max HOM05D000458 ORTHO05D004796 6.4e-18 94.0 56 82.1
Glyma.12G162963 Glycine max HOM05D000458 ORTHO05D004796 6.4e-18 94.0 56 82.1
Oeu051082.2 Olea europaea HOM05D000458 ORTHO05D004796 6.4e-18 94.0 50 88.0
Rhsim06G0201500 Rhododendron simsii HOM05D000458 ORTHO05D004796 6.4e-18 94.0 56 78.6
Sc03g0010150 Simmondsia chinensis HOM05D000458 ORTHO05D004796 6.4e-18 94.0 56 80.4
THA.LOC104810460 Tarenaya hassleriana HOM05D000458 ORTHO05D004796 6.4e-18 94.0 56 78.6
TWI39G1101 Tripterygium wilfordii HOM05D000458 ORTHO05D004796 6.4e-18 94.0 56 82.1
Duzib244G0005 Durio zibethinus HOM05D000458 ORTHO05D004796 8.4e-18 93.6 56 78.6
Duzib268G0440 Durio zibethinus HOM05D000458 ORTHO05D004796 8.4e-18 93.6 56 78.6
Lj3g0001084 Lotus japonicus HOM05D000458 ORTHO05D004796 8.4e-18 93.6 96 54.2
Manes.03G106600 Manihot esculenta HOM05D000458 ORTHO05D004796 8.4e-18 93.6 56 78.6
QL08p022680 Quercus lobata HOM05D000458 ORTHO05D004796 8.4e-18 93.6 50 86.0
AT1G53165 Arabidopsis thaliana HOM05D000458 ORTHO05D004796 1.1e-17 93.2 56 78.6
Carub.0001s4233 Capsella rubella HOM05D000458 ORTHO05D004796 1.1e-17 93.2 56 78.6
CAN.G162.39 Capsicum annuum HOM05D000458 ORTHO05D004796 1.1e-17 93.2 56 80.4
CARHR043390 Cardamine hirsuta HOM05D000458 ORTHO05D004796 1.1e-17 93.2 50 86.0
AL1G61540 Arabidopsis lyrata HOM05D000458 ORTHO05D004796 1.4e-17 92.8 56 78.6
BcaC08g44049 Brassica carinata HOM05D000458 ORTHO05D004796 1.4e-17 92.8 56 78.6
A05p18560 Brassica napus HOM05D000458 ORTHO05D004796 1.4e-17 92.8 56 78.6
C06p14490 Brassica napus HOM05D000458 ORTHO05D004796 1.4e-17 92.8 56 78.6
BolC6t36630H Brassica oleracea HOM05D000458 ORTHO05D004796 1.4e-17 92.8 56 78.6
BraA05t20749Z Brassica rapa HOM05D000458 ORTHO05D004796 1.4e-17 92.8 56 78.6
Thhalv10011332m.g Eutrema salsugineum HOM05D000458 ORTHO05D004796 1.4e-17 92.8 56 78.6
HanXRQChr10g0302641 Helianthus annuus HOM05D000458 ORTHO05D004796 1.4e-17 92.8 56 78.6
Nn8g40509 Nelumbo nucifera HOM05D000458 ORTHO05D017194 1.9e-17 92.4 56 78.6
Nitab4.5_0005017g0020 Nicotiana tabacum HOM05D000458 ORTHO05D004796 1.9e-17 92.4 56 78.6
Os07g0507300 Oryza sativa ssp. japonica HOM05D000458 ORTHO05D004796 1.9e-17 92.4 50 84.0
Phvul.011G164700 Phaseolus vulgaris HOM05D000458 ORTHO05D004796 1.9e-17 92.4 56 80.4
ATR0150G013 Amborella trichopoda HOM05D000458 ORTHO05D004796 2.4e-17 92.0 56 76.8
AT3G15220 Arabidopsis thaliana HOM05D000458 ORTHO05D004796 2.4e-17 92.0 56 80.4
Lj3g0007512 Lotus japonicus HOM05D000458 ORTHO05D004796 2.4e-17 92.0 56 78.6
PGR083G0851 Punica granatum HOM05D000458 ORTHO05D004796 2.4e-17 92.0 56 80.4
THA.LOC104818087 Tarenaya hassleriana HOM05D000458 ORTHO05D004796 2.4e-17 92.0 56 76.8
Solyc07g062940.4 Solanum lycopersicum HOM05D000458 ORTHO05D004796 3.2e-17 91.7 56 78.6
Sopen07g031130 Solanum pennellii HOM05D000458 ORTHO05D004796 3.2e-17 91.7 56 78.6
DCAR_019567 Daucus carota HOM05D000458 ORTHO05D004796 4.2e-17 91.3 71 62.0
Potri.011G116300 Populus trichocarpa HOM05D000458 ORTHO05D004796 4.2e-17 91.3 50 84.0
Sp1g39720 Schrenkiella parvula HOM05D000458 ORTHO05D004796 4.2e-17 91.3 56 76.8
unitig_46.g18322 Utricularia gibba HOM05D000458 ORTHO05D004796 4.2e-17 91.3 56 78.6
HPP92_010204 Vanilla planifolia HOM05D000458 ORTHO05D004796 5.4e-17 90.9 56 73.2
Cc05_g11800 Coffea canephora HOM05D000458 ORTHO05D004796 9.2e-17 90.1 56 78.6
BolC3t21432H Brassica oleracea HOM05D000458 ORTHO05D004796 1.6e-16 89.4 56 76.8
C03p91200 Brassica napus HOM05D000458 ORTHO05D004796 2.7e-16 88.6 56 75.0
Nn7g37354 Nelumbo nucifera HOM05D000458 ORTHO05D017194 2.7e-16 88.6 57 71.9
SMO351G0517 Selaginella moellendorffii HOM05D000458 ORTHO05D004796 1.0e-15 86.7 56 71.4
CDE02G3458 Ceratophyllum demersum HOM05D000458 ORTHO05D004796 1.7e-15 85.9 56 75.0
SEGI_33899 Sequoiadendron giganteum HOM05D000458 ORTHO05D004796 2.3e-15 85.5 50 76.0
Pp3c17_14200 Physcomitrium patens HOM05D000458 ORTHO05D004796 3.9e-15 84.7 56 69.6
AagrBONN_evm.TU.Sc2ySwM_344.4386 Anthoceros agrestis HOM05D000458 ORTHO05D004796 5.1e-15 84.3 56 69.6
Pp3c1_23810 Physcomitrium patens HOM05D000458 ORTHO05D004796 8.7e-15 83.6 56 67.9
AagrBONN_evm.TU.Sc2ySwM_368.3445 Anthoceros agrestis HOM05D000458 ORTHO05D004796 5.6e-14 80.9 56 66.1
CBR_g37697 Chara braunii HOM05D000458 ORTHO05D004796 2.1e-13 79.0 89 48.3
Mapoly0133s0001 Marchantia polymorpha HOM05D000458 ORTHO05D004796 2.1e-13 79.0 56 69.6
BcaC02g11235 Brassica carinata HOM05D017269 ORTHO05D017194 1.4e-09 66.2 39 87.2
Lsat_1_v5_gn_7_104681 Lactuca sativa HOM05D000458 ORTHO05D004796 3.2e-09 65.1 43 72.1
Haze_26102 Corylus avellana HOM05D000458 ORTHO05D004796 7.1e-09 63.9 56 51.8
Ah.06g184510 Amaranthus hybridus HOM05D000458 ORTHO05D004796 6.0e-08 60.8 27 100.0
Haze_09451 Corylus avellana HOM05D000458 ORTHO05D004796 6.0e-08 60.8 27 100.0
Nitab4.5_0002330g0040 Nicotiana tabacum HOM05D000458 ORTHO05D004796 6.0e-08 60.8 27 100.0
Sabra11G0101900 Salix brachista HOM05D000458 ORTHO05D004796 6.0e-08 60.8 27 100.0
Zm00001eb322360 Zea mays HOM05D000458 ORTHO05D004796 1.0e-07 60.1 27 96.3
Nn5g27915 Nelumbo nucifera HOM05D000458 ORTHO05D017194 1.7e-07 59.3 27 96.3
BcaB03g14044 Brassica carinata HOM05D017269 ORTHO05D092901 3.0e-07 58.5 39 76.9
CDE05G2963 Ceratophyllum demersum HOM05D000458 ORTHO05D004796 3.9e-07 58.2 27 96.3
Cfa027192 Carpinus fangiana HOM05D000458 ORTHO05D004796 6.6e-07 57.4 56 46.4
BcaB05g23700 Brassica carinata HOM05D017269 ORTHO05D017194 1.1e-06 56.6 35 77.1
BcaB02g11251 Brassica carinata HOM05D017269 ORTHO05D095988 7.3e-06 53.9 35 74.3
Actinidia12797 Actinidia chinensis HOM05D000458 ORTHO05D017194 9.6e-06 53.5 39 66.7
BcaB04g19011 Brassica carinata HOM05D017269 ORTHO05D093710 9.6e-06 53.5 34 76.5
CDE02G0939 Ceratophyllum demersum HOM05D000458 ORTHO05D004796 9.6e-06 53.5 34 73.5


User provided reference genes

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